Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47229 * 239.99927 * 2 1 3 5 5 C 1.50703 * 109.47072 * 120.00284 * 2 1 3 6 6 C 1.33388 * 125.20675 * 59.99767 * 5 2 1 7 7 C 1.38417 * 114.92216 * 180.02562 * 6 5 2 8 8 C 1.33395 * 114.92349 * 359.97438 * 7 6 5 9 9 S 1.76197 * 125.20542 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40207 * 203.54571 * 9 8 7 11 11 O 1.42100 * 106.40175 * 336.46419 * 9 8 7 12 12 N 1.65598 * 107.21870 * 90.00190 * 9 8 7 13 13 C 1.36939 * 119.99885 * 90.00024 * 12 9 8 14 14 H 1.08004 * 119.99611 * 7.24250 * 13 12 9 15 15 C 1.38808 * 120.00185 * 187.24346 * 13 12 9 16 16 N 1.31618 * 120.00143 * 25.59874 * 15 13 12 17 17 Si 1.86794 * 120.00049 * 205.59809 * 15 13 12 18 18 H 1.48496 * 109.47424 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47341 * 120.00086 * 17 15 13 20 20 H 1.48499 * 109.47456 * 239.99709 * 17 15 13 21 21 C 1.46502 * 120.00178 * 270.00162 * 12 9 8 22 22 C 1.47202 * 109.47136 * 93.32669 * 21 12 9 23 23 N 6.20502 * 129.33817 * 156.79708 * 2 1 3 24 24 S 1.75879 * 109.58979 * 0.02562 * 8 7 6 25 25 H 1.09001 * 109.46959 * 300.00216 * 1 2 3 26 26 H 1.08994 * 109.47259 * 60.00054 * 1 2 3 27 27 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46899 * 300.00057 * 3 2 1 30 30 H 1.08997 * 109.46842 * 59.99842 * 3 2 1 31 31 H 1.09001 * 109.47019 * 300.00252 * 4 2 1 32 32 H 1.09004 * 109.47074 * 59.99877 * 4 2 1 33 33 H 1.08989 * 109.47547 * 180.02562 * 4 2 1 34 34 H 1.08004 * 122.53892 * 0.02562 * 6 5 2 35 35 H 1.07998 * 122.53927 * 179.73339 * 7 6 5 36 36 H 0.96992 * 120.00668 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.46675 * 213.32561 * 21 12 9 38 38 H 1.09000 * 109.46690 * 333.32272 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7748 -1.9812 1.5437 7 6 2.3449 -2.4172 2.7273 8 6 3.0658 -1.5007 3.3751 9 16 3.9064 -1.7623 4.9014 10 8 4.0590 -0.4825 5.4998 11 8 3.2474 -2.8462 5.5418 12 7 5.4320 -2.2927 4.5361 13 6 6.4479 -1.3905 4.3651 14 1 6.2841 -0.3452 4.5822 15 6 7.6882 -1.8193 3.9129 16 7 7.7820 -2.9140 3.1881 17 14 9.2242 -0.8428 4.3328 18 1 8.8516 0.3377 5.1530 19 1 10.1625 -1.7013 5.0995 20 1 9.8800 -0.3887 3.0802 21 6 5.6949 -3.7271 4.3957 22 6 5.5638 -4.1139 2.9815 23 7 5.4633 -4.4109 1.8908 24 16 3.0475 0.0093 2.4734 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.1676 -2.6215 0.9209 35 1 2.2126 -3.4221 3.1001 36 1 8.6486 -3.2135 2.8718 37 1 6.7054 -3.9466 4.7403 38 1 4.9770 -4.2881 4.9940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121778947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = -28.733436 kcal Electronic energy + Delta-G solvation = -24169.059353 eV Core-core repulsion = 20651.083718 eV Total energy + Delta-G solvation = -3517.975635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.66903 -38.48857 -37.83984 -36.95326 -36.46705 -36.28396 -33.53188 -29.97970 -29.25745 -28.36391 -28.19986 -25.91975 -25.30563 -21.53507 -20.93365 -20.28496 -19.53741 -18.59358 -18.30063 -17.80595 -16.94796 -16.50313 -16.15835 -15.85193 -15.40042 -15.36786 -15.01000 -14.77725 -14.35545 -14.14936 -13.94486 -13.68873 -13.55809 -13.28410 -13.22924 -13.08440 -12.93727 -12.85449 -12.75706 -12.67257 -12.62449 -12.49077 -12.18281 -12.10085 -12.01722 -12.00705 -11.89508 -11.77933 -11.48176 -11.40962 -10.28043 -9.85933 -9.46873 -8.52396 -5.91914 -0.42078 -0.13604 0.61832 0.97440 1.50856 1.57088 1.59488 1.71630 1.96596 2.30061 2.39032 2.74947 2.82394 3.13637 3.45258 3.61939 3.83214 3.86442 3.94013 4.18248 4.40141 4.43997 4.46590 4.64167 4.68852 4.78302 4.81391 4.88510 4.89961 4.92230 4.99437 5.08354 5.16205 5.22507 5.30988 5.34276 5.39497 5.47219 6.26648 6.65391 7.08178 7.09087 8.46991 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.005112 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.333997 B = 5475.512090 C = 5768.145118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 C -0.153 4.153 4 C -0.134 4.134 5 C -0.135 4.135 6 C -0.173 4.173 7 C -0.024 4.024 8 C -0.791 4.791 9 S 2.567 3.433 10 O -0.999 6.999 11 O -1.001 7.001 12 N -0.801 5.801 13 C -0.268 4.268 14 H 0.119 0.881 15 C 0.009 3.991 16 N -0.854 5.854 17 Si 0.992 3.008 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.282 1.282 21 C 0.222 3.778 22 C 0.253 3.747 23 N -0.503 5.503 24 S 0.172 5.828 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.285 0.715 37 H 0.142 0.858 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 3.914 -5.498 9.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.005 4.005 3 C -0.211 4.211 4 C -0.192 4.192 5 C -0.255 4.255 6 C -0.203 4.203 7 C -0.059 4.059 8 C -0.987 4.987 9 S 2.666 3.334 10 O -0.989 6.989 11 O -0.991 6.991 12 N -0.624 5.624 13 C -0.414 4.414 14 H 0.137 0.863 15 C -0.201 4.201 16 N -0.493 5.493 17 Si 0.814 3.186 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.208 1.208 21 C 0.093 3.907 22 C -0.066 4.066 23 N -0.184 5.184 24 S 0.439 5.561 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.968 4.926 -6.063 10.468 hybrid contribution 0.179 -1.133 -0.465 1.237 sum -6.789 3.793 -6.527 10.153 Atomic orbital electron populations 1.21876 0.91156 1.02869 1.03041 1.19380 0.97162 0.94794 0.89183 1.22031 1.01038 0.94357 1.03691 1.21887 1.00497 1.00626 0.96160 1.25530 1.00988 0.98308 1.00643 1.20343 1.05463 0.96146 0.98362 1.20001 0.92985 0.99147 0.93719 1.36969 1.23603 1.05489 1.32636 1.10018 0.73170 0.72699 0.77545 1.93343 1.86027 1.42374 1.77142 1.93334 1.75600 1.54496 1.75696 1.55339 1.19371 1.10033 1.77699 1.20334 0.87537 0.93836 1.39722 0.86313 1.26226 1.02260 0.98024 0.93633 1.69993 1.27550 1.23796 1.27979 0.84873 0.76639 0.78788 0.78287 1.18308 1.18707 1.20833 1.19266 1.06522 0.81242 0.83705 1.29770 0.89360 0.91420 0.96037 1.80798 1.13510 1.10859 1.13201 1.83858 1.48079 1.10656 1.13485 0.92822 0.89431 0.91985 0.93215 0.88749 0.92319 0.92229 0.89244 0.94102 0.82239 0.84075 0.90435 0.84094 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.34 71.98 0.60 -1.80 16 2 C 0.00 -0.07 0.91 -52.93 -0.05 -0.11 16 3 C -0.15 -3.27 7.56 71.98 0.54 -2.73 16 4 C -0.13 -2.84 8.34 71.98 0.60 -2.24 16 5 C -0.14 -4.27 5.13 24.59 0.13 -4.15 16 6 C -0.17 -5.71 9.31 21.21 0.20 -5.52 16 7 C -0.02 -0.95 9.84 21.22 0.21 -0.74 16 8 C -0.79 -33.54 6.57 66.72 0.44 -33.10 16 9 S 2.57 117.00 5.80 -56.49 -0.33 116.67 16 10 O -1.00 -49.88 16.68 -128.00 -2.14 -52.02 16 11 O -1.00 -46.52 16.37 -128.00 -2.09 -48.61 16 12 N -0.80 -35.70 2.88 -352.51 -1.02 -36.71 16 13 C -0.27 -12.29 9.47 84.03 0.80 -11.50 16 14 H 0.12 5.56 7.22 -2.91 -0.02 5.54 16 15 C 0.01 0.38 4.90 84.86 0.42 0.79 16 16 N -0.85 -38.34 8.99 21.65 0.19 -38.14 16 17 Si 0.99 35.18 29.62 68.60 2.03 37.21 16 18 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 20 H -0.28 -10.16 7.11 99.48 0.71 -9.46 16 21 C 0.22 8.91 5.45 84.57 0.46 9.37 16 22 C 0.25 11.15 13.28 89.46 1.19 12.33 16 23 N -0.50 -23.67 18.53 19.99 0.37 -23.30 16 24 S 0.17 6.51 21.71 -56.49 -1.23 5.28 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.11 7.94 -2.39 -0.02 1.09 16 28 H 0.05 1.19 7.96 -2.39 -0.02 1.17 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.28 7.96 -2.39 -0.02 1.27 16 31 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.16 4.31 8.01 -2.91 -0.02 4.29 16 35 H 0.14 5.23 8.05 -2.91 -0.02 5.21 16 36 H 0.28 12.13 8.31 -92.71 -0.77 11.36 16 37 H 0.14 5.42 6.47 -2.39 -0.02 5.40 16 38 H 0.13 4.38 6.95 -2.39 -0.02 4.36 16 Total: -1.00 -60.56 348.53 2.40 -58.16 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.08 Total: 20.84 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 5.53 Total: -39.38 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -0.45 Total: -98.16 kcal Atomic # 8 Polarization: -96.40 SS G_CDS: -4.23 Total: -100.63 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Atomic # 16 Polarization: 123.51 SS G_CDS: -1.55 Total: 121.95 kcal Total: -60.56 2.40 -58.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121778947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.426 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds