Wall clock time and date at job start Tue Mar 31 2020 15:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35223 * 107.87157 * 179.89886 * 11 10 9 13 13 C 1.40437 * 107.86724 * 0.36423 * 12 11 10 14 14 N 1.40030 * 125.98021 * 179.75515 * 13 12 11 15 15 C 1.34776 * 120.00083 * 359.97438 * 14 13 12 16 16 O 1.21574 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.47778 * 120.00296 * 180.02562 * 15 14 13 18 18 N 1.28981 * 124.87106 * 359.70099 * 17 15 14 19 19 C 1.33345 * 118.22152 * 179.80713 * 18 17 15 20 20 C 1.41544 * 128.82302 * 180.19752 * 19 18 17 21 21 C 1.35917 * 120.51314 * 180.32690 * 20 19 18 22 22 C 1.38972 * 120.87271 * 359.94767 * 21 20 19 23 23 C 1.37501 * 120.07149 * 0.03173 * 22 21 20 24 24 C 1.39533 * 120.02597 * 359.97438 * 23 22 21 25 25 S 1.75864 * 124.87362 * 179.97438 * 17 15 14 26 26 N 1.31242 * 108.04226 * 359.77393 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08004 * 126.06388 * 0.03955 * 11 10 9 31 31 H 1.07996 * 126.07096 * 180.14150 * 12 11 10 32 32 H 0.97000 * 120.00311 * 179.97438 * 14 13 12 33 33 H 1.08000 * 119.74672 * 0.27652 * 20 19 18 34 34 H 1.07999 * 119.55890 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.96175 * 180.02562 * 22 21 20 36 36 H 1.07998 * 119.98619 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0529 -4.4047 -0.5788 13 6 4.2963 -4.6710 0.5740 14 7 4.2276 -5.8965 1.2479 15 6 4.9296 -6.9545 0.7959 16 8 5.6221 -6.8450 -0.1973 17 6 4.8566 -8.2480 1.5068 18 7 4.1579 -8.4676 2.5685 19 6 4.1861 -9.6901 3.1002 20 6 3.5114 -10.1751 4.2461 21 6 3.6685 -11.4649 4.6451 22 6 4.4913 -12.3345 3.9394 23 6 5.1607 -11.8950 2.8216 24 6 5.0142 -10.5750 2.3940 25 16 5.7154 -9.7070 1.0305 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2844 -2.6012 -1.7656 31 1 5.6842 -5.1080 -1.1015 32 1 3.6748 -5.9841 2.0402 33 1 2.8673 -9.5151 4.8082 34 1 3.1466 -11.8186 5.5220 35 1 4.6052 -13.3565 4.2694 36 1 5.8001 -12.5719 2.2745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123519613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:52 Heat of formation + Delta-G solvation = 121.719116 kcal Electronic energy + Delta-G solvation = -23098.554658 eV Core-core repulsion = 19483.951935 eV Total energy + Delta-G solvation = -3614.602723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02727 -40.61841 -39.37102 -37.13432 -34.97726 -33.32562 -31.59690 -31.47029 -30.36037 -29.47239 -27.43866 -26.16137 -23.94974 -22.80721 -22.34122 -21.53402 -20.31371 -19.62550 -18.87955 -17.72318 -17.16375 -16.85792 -16.36021 -15.85412 -15.75916 -15.51800 -15.14601 -14.78502 -14.37547 -14.31082 -14.18727 -13.64296 -13.15163 -12.91270 -12.59615 -12.43634 -12.40647 -12.31726 -12.08883 -11.29855 -11.22561 -10.92814 -10.63071 -10.58809 -10.49324 -10.19059 -10.04670 -9.88310 -9.55887 -9.14127 -8.77676 -8.55743 -8.27920 -7.62896 -6.24193 -4.26940 -0.37413 0.66499 0.70120 1.25468 1.52076 2.44086 2.55997 2.83590 3.15533 3.20358 3.22250 3.25521 3.31428 3.61801 3.81578 4.14699 4.21973 4.42159 4.55550 4.74107 4.81764 5.03212 5.06384 5.34966 5.40070 5.62562 5.63440 5.70987 5.90889 6.03602 6.17946 6.30663 6.37114 6.42835 6.60189 7.00967 7.19120 7.21839 7.43214 7.75062 7.93006 8.31001 8.47357 8.85365 9.30271 10.88433 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002295 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.532529 B =12194.920432 C =13094.353030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.257 3.743 14 N -0.600 5.600 15 C 0.602 3.398 16 O -0.497 6.497 17 C 0.063 3.937 18 N -0.426 5.426 19 C 0.076 3.924 20 C -0.051 4.051 21 C -0.112 4.112 22 C -0.089 4.089 23 C -0.077 4.077 24 C -0.178 4.178 25 S 0.166 5.834 26 N -0.288 5.288 27 H 0.268 0.732 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.423 0.577 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.956 -24.022 6.538 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.095 4.095 12 C -0.313 4.313 13 C 0.003 3.997 14 N -0.248 5.248 15 C 0.382 3.618 16 O -0.369 6.369 17 C -0.221 4.221 18 N -0.143 5.143 19 C -0.048 4.048 20 C -0.072 4.072 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.100 4.100 24 C -0.297 4.297 25 S 0.424 5.576 26 N -0.119 5.119 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.261 0.739 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.865 -22.855 5.946 26.429 hybrid contribution -0.023 0.304 0.606 0.679 sum 11.842 -22.551 6.553 26.300 Atomic orbital electron populations 1.69873 1.06157 1.27322 1.49029 1.24835 0.94881 0.98808 0.94237 0.86887 0.80219 0.83804 0.79016 1.19686 1.18947 1.20579 1.21103 0.87717 0.95762 1.52807 0.89595 1.20098 0.97544 0.72794 0.98348 1.48688 1.32555 1.10202 1.18270 1.22566 0.95865 0.94557 0.96509 1.21543 1.11465 0.96962 1.01351 1.18990 0.99592 0.86227 0.94866 1.41985 1.46077 1.06652 1.30066 1.16663 0.80504 0.81078 0.83546 1.90805 1.39522 1.82446 1.24130 1.26923 0.99852 0.99094 0.96221 1.65911 1.18724 1.21071 1.08608 1.19015 1.00195 0.86962 0.98581 1.20616 0.97454 0.95972 0.93128 1.20772 0.99054 0.92996 1.00511 1.21244 0.95553 1.00163 0.94193 1.20376 1.00327 0.92034 0.97250 1.24286 1.04034 1.00369 1.01044 1.85152 1.45805 1.01890 1.24803 1.77449 1.23132 0.95382 1.15901 0.92150 0.92744 0.94317 0.81114 0.81950 0.73943 0.84242 0.84460 0.84473 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.06 9.79 -34.44 -0.34 -15.40 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.42 5.33 -5.20 -0.03 5.39 16 10 N -0.32 -7.07 3.67 -62.57 -0.23 -7.30 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 12 C -0.28 -5.37 9.60 -39.83 -0.38 -5.75 16 13 C 0.26 5.16 8.10 -154.49 -1.25 3.90 16 14 N -0.60 -10.06 5.44 -12.02 -0.07 -10.12 16 15 C 0.60 9.41 7.80 -12.36 -0.10 9.31 16 16 O -0.50 -8.52 14.03 5.30 0.07 -8.45 16 17 C 0.06 0.84 7.41 -14.85 -0.11 0.73 16 18 N -0.43 -5.54 10.08 -8.56 -0.09 -5.62 16 19 C 0.08 0.85 6.93 -85.19 -0.59 0.25 16 20 C -0.05 -0.43 10.06 -39.15 -0.39 -0.82 16 21 C -0.11 -0.67 9.93 -40.14 -0.40 -1.07 16 22 C -0.09 -0.49 10.04 -39.58 -0.40 -0.89 16 23 C -0.08 -0.55 10.07 -39.37 -0.40 -0.94 16 24 C -0.18 -1.77 6.56 -38.34 -0.25 -2.02 16 25 S 0.17 1.79 23.17 -107.50 -2.49 -0.70 16 26 N -0.29 -6.61 12.42 31.42 0.39 -6.22 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 29 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 30 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 32 H 0.42 6.44 8.45 -40.82 -0.34 6.10 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -33.62 335.22 -9.30 -42.93 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.12 Total: 5.25 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -4.93 Total: -4.43 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.78 Total: -55.04 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.62 -9.30 -42.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123519613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.646 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds