Wall clock time and date at job start Tue Mar 31 2020 15:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35223 * 107.87157 * 179.89886 * 11 10 9 13 13 C 1.40437 * 107.86724 * 0.36423 * 12 11 10 14 14 N 1.40030 * 125.98021 * 179.75515 * 13 12 11 15 15 C 1.34776 * 120.00083 * 359.97438 * 14 13 12 16 16 O 1.21574 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.47778 * 120.00296 * 180.02562 * 15 14 13 18 18 N 1.28981 * 124.87106 * 359.70099 * 17 15 14 19 19 C 1.33345 * 118.22152 * 179.80713 * 18 17 15 20 20 C 1.41544 * 128.82302 * 180.19752 * 19 18 17 21 21 C 1.35917 * 120.51314 * 180.32690 * 20 19 18 22 22 C 1.38972 * 120.87271 * 359.94767 * 21 20 19 23 23 C 1.37501 * 120.07149 * 0.03173 * 22 21 20 24 24 C 1.39533 * 120.02597 * 359.97438 * 23 22 21 25 25 S 1.75864 * 124.87362 * 179.97438 * 17 15 14 26 26 N 1.31242 * 108.04226 * 359.77393 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08004 * 126.06388 * 0.03955 * 11 10 9 31 31 H 1.07996 * 126.07096 * 180.14150 * 12 11 10 32 32 H 0.97000 * 120.00311 * 179.97438 * 14 13 12 33 33 H 1.08000 * 119.74672 * 0.27652 * 20 19 18 34 34 H 1.07999 * 119.55890 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.96175 * 180.02562 * 22 21 20 36 36 H 1.07998 * 119.98619 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0529 -4.4047 -0.5788 13 6 4.2963 -4.6710 0.5740 14 7 4.2276 -5.8965 1.2479 15 6 4.9296 -6.9545 0.7959 16 8 5.6221 -6.8450 -0.1973 17 6 4.8566 -8.2480 1.5068 18 7 4.1579 -8.4676 2.5685 19 6 4.1861 -9.6901 3.1002 20 6 3.5114 -10.1751 4.2461 21 6 3.6685 -11.4649 4.6451 22 6 4.4913 -12.3345 3.9394 23 6 5.1607 -11.8950 2.8216 24 6 5.0142 -10.5750 2.3940 25 16 5.7154 -9.7070 1.0305 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2844 -2.6012 -1.7656 31 1 5.6842 -5.1080 -1.1015 32 1 3.6748 -5.9841 2.0402 33 1 2.8673 -9.5151 4.8082 34 1 3.1466 -11.8186 5.5220 35 1 4.6052 -13.3565 4.2694 36 1 5.8001 -12.5719 2.2745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123519613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:51 Heat of formation + Delta-G solvation = 98.797833 kcal Electronic energy + Delta-G solvation = -23099.548599 eV Core-core repulsion = 19483.951935 eV Total energy + Delta-G solvation = -3615.596664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39891 -41.55498 -40.62143 -37.87130 -36.43617 -35.25021 -33.22867 -32.17914 -31.29980 -30.97720 -29.12059 -27.24505 -24.94505 -24.22558 -23.32580 -22.72561 -21.84047 -20.93187 -19.67443 -19.11509 -18.78592 -18.25781 -17.44575 -17.02795 -16.92386 -16.44730 -16.31842 -16.12345 -15.70540 -15.27678 -15.16891 -14.90234 -14.81461 -14.45219 -13.93021 -13.86327 -13.54068 -13.07496 -12.91524 -12.90296 -12.67637 -12.25467 -11.99777 -11.84472 -11.79896 -11.63674 -11.43329 -11.29071 -11.02549 -10.88215 -9.91142 -9.81447 -9.25384 -9.20560 -8.37810 -6.48611 -1.21803 -0.19240 0.11541 0.45810 0.59401 1.09396 1.23535 1.37627 1.40151 1.49302 1.57073 2.07274 2.14866 2.28829 2.62373 2.63418 2.94803 3.38773 3.65271 3.87809 4.01129 4.15682 4.21326 4.28751 4.52468 4.55163 4.64737 4.81485 4.83379 4.84925 4.97435 5.00825 5.21834 5.23086 5.37438 5.68291 5.72368 5.92965 5.97421 6.22196 6.37489 6.56999 6.63496 6.91214 7.14193 8.79342 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002295 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.532529 B =12194.920432 C =13094.353030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.227 1.227 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.339 5.339 11 C 0.067 3.933 12 C -0.291 4.291 13 C 0.261 3.739 14 N -0.604 5.604 15 C 0.607 3.393 16 O -0.516 6.516 17 C 0.025 3.975 18 N -0.434 5.434 19 C 0.037 3.963 20 C -0.064 4.064 21 C -0.103 4.103 22 C -0.067 4.067 23 C -0.087 4.087 24 C -0.181 4.181 25 S 0.182 5.818 26 N -0.342 5.342 27 H 0.272 0.728 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.217 0.783 31 H 0.174 0.826 32 H 0.426 0.574 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.198 -25.682 7.141 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.149 1.149 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.118 3.882 10 N -0.121 5.121 11 C -0.081 4.081 12 C -0.322 4.322 13 C 0.006 3.994 14 N -0.252 5.252 15 C 0.390 3.610 16 O -0.389 6.389 17 C -0.257 4.257 18 N -0.152 5.152 19 C -0.086 4.086 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.110 4.110 24 C -0.301 4.301 25 S 0.439 5.561 26 N -0.173 5.173 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.234 0.766 31 H 0.191 0.809 32 H 0.264 0.736 33 H 0.162 0.838 34 H 0.190 0.810 35 H 0.197 0.803 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.132 -24.548 6.541 29.071 hybrid contribution -0.795 0.422 0.572 1.067 sum 13.338 -24.125 7.114 28.470 Atomic orbital electron populations 1.70056 1.08642 1.28831 1.50621 1.25953 0.95798 1.03641 0.93189 0.85599 0.79963 0.77074 0.79612 1.19124 1.14940 1.20363 1.21234 0.90554 0.93718 1.53133 0.95680 1.19961 0.94130 0.74126 0.99956 1.48586 1.34102 1.09981 1.19477 1.23307 0.94015 0.94423 0.96315 1.21781 1.11701 0.97521 1.01180 1.19341 0.98461 0.86547 0.95038 1.42103 1.46684 1.06148 1.30230 1.16962 0.79390 0.81448 0.83216 1.90757 1.40162 1.83010 1.24961 1.26358 1.02772 0.98988 0.97603 1.65841 1.18314 1.22640 1.08396 1.19389 1.02210 0.86717 1.00237 1.20912 0.97639 0.97451 0.92575 1.21252 0.98274 0.91729 1.01070 1.21817 0.92956 1.01743 0.92378 1.20836 1.01035 0.91024 0.98137 1.24552 1.03662 1.01446 1.00415 1.84900 1.45345 1.00480 1.25376 1.77359 1.25423 0.96702 1.17831 0.91875 0.89438 0.93579 0.76603 0.80897 0.73564 0.83831 0.81025 0.80335 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.96 40.81 27.47 68.60 1.88 42.70 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.92 9.79 25.60 0.25 -31.67 16 8 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.24 11.00 5.33 85.63 0.46 11.46 16 10 N -0.34 -15.32 3.67 -351.86 -1.29 -16.61 16 11 C 0.07 2.47 11.43 83.51 0.95 3.42 16 12 C -0.29 -11.12 9.60 22.11 0.21 -10.91 16 13 C 0.26 10.89 8.10 133.37 1.08 11.97 16 14 N -0.60 -21.51 5.44 -310.20 -1.69 -23.19 16 15 C 0.61 19.99 7.80 86.77 0.68 20.67 16 16 O -0.52 -18.26 14.03 -3.95 -0.06 -18.32 16 17 C 0.02 0.70 7.41 87.64 0.65 1.35 16 18 N -0.43 -11.82 10.08 -180.99 -1.83 -13.65 16 19 C 0.04 0.83 6.93 40.22 0.28 1.10 16 20 C -0.06 -1.00 10.06 22.55 0.23 -0.78 16 21 C -0.10 -0.85 9.93 21.91 0.22 -0.63 16 22 C -0.07 -0.43 10.04 22.27 0.22 -0.20 16 23 C -0.09 -0.96 10.07 22.41 0.23 -0.74 16 24 C -0.18 -3.41 6.56 23.08 0.15 -3.26 16 25 S 0.18 3.94 23.17 -56.49 -1.31 2.63 16 26 N -0.34 -16.46 12.42 -54.50 -0.68 -17.13 16 27 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.09 3.47 7.12 -2.39 -0.02 3.45 16 29 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 30 H 0.22 5.61 8.06 -2.91 -0.02 5.59 16 31 H 0.17 6.21 5.91 -2.91 -0.02 6.19 16 32 H 0.43 14.17 8.45 -92.71 -0.78 13.38 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 35 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -79.68 335.22 1.72 -77.96 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.32 Total: 20.99 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.07 Total: 2.99 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.18 Total: -128.95 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.06 Total: -18.32 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.70 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.31 Total: 2.63 kcal Total: -79.68 1.72 -77.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123519613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.759 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds