Wall clock time and date at job start Tue Mar 31 2020 15:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 S 1.81399 * 109.47349 * 2.67161 * 3 2 1 5 5 C 1.76201 * 103.00245 * 180.02562 * 4 3 2 6 6 C 1.39043 * 120.18414 * 0.29557 * 5 4 3 7 7 C 1.37905 * 120.05716 * 180.32146 * 6 5 4 8 8 C 1.38646 * 120.44082 * 359.68248 * 7 6 5 9 9 C 1.37737 * 120.36412 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.93521 * 0.03033 * 9 8 7 11 11 C 1.47369 * 120.21685 * 179.97438 * 10 9 8 12 12 O 1.21643 * 120.00111 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00155 * 359.97438 * 11 10 9 14 14 C 1.40540 * 120.00330 * 179.97438 * 13 11 10 15 15 C 1.40665 * 126.08409 * 0.03243 * 14 13 11 16 16 N 1.30901 * 108.39014 * 179.73277 * 15 14 13 17 17 N 1.40070 * 108.40965 * 359.97438 * 16 15 14 18 18 C 1.37317 * 126.06870 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99883 * 179.97438 * 18 17 16 20 20 C 1.38993 * 119.99918 * 359.97438 * 18 17 16 21 21 N 1.31285 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99710 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47045 * 120.00196 * 22 20 18 25 25 H 1.48502 * 109.46966 * 239.99584 * 22 20 18 26 26 C 1.35691 * 126.08267 * 179.71102 * 14 13 11 27 27 H 1.09005 * 109.47134 * 242.67097 * 3 2 1 28 28 H 1.08993 * 109.47463 * 122.67619 * 3 2 1 29 29 H 1.08001 * 119.96598 * 0.02562 * 6 5 4 30 30 H 1.08011 * 119.78042 * 179.70762 * 7 6 5 31 31 H 1.07997 * 119.81624 * 180.02562 * 8 7 6 32 32 H 1.08005 * 120.03087 * 179.97438 * 9 8 7 33 33 H 0.97007 * 119.99639 * 0.02562 * 13 11 10 34 34 H 1.08001 * 125.80452 * 359.70358 * 15 14 13 35 35 H 0.97005 * 120.00399 * 179.97438 * 21 20 18 36 36 H 1.07999 * 126.25303 * 0.25107 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2135 -1.7074 -0.0797 5 6 4.9642 -1.5083 -0.0697 6 6 5.5228 -0.2368 -0.0037 7 6 6.8933 -0.0836 -0.0027 8 6 7.7240 -1.1921 -0.0606 9 6 7.1897 -2.4603 -0.1193 10 6 5.8031 -2.6334 -0.1213 11 6 5.2248 -3.9874 -0.1845 12 8 4.0171 -4.1335 -0.1856 13 7 6.0338 -5.0638 -0.2412 14 6 5.4823 -6.3551 -0.3009 15 6 4.1117 -6.6710 -0.3095 16 7 3.9882 -7.9724 -0.3776 17 7 5.2696 -8.5369 -0.4156 18 6 5.5608 -9.8768 -0.4889 19 1 6.5894 -10.2052 -0.5133 20 6 4.5320 -10.8103 -0.5318 21 7 3.2817 -10.4110 -0.5017 22 14 4.9283 -12.6331 -0.6308 23 1 6.4014 -12.8190 -0.6506 24 1 4.3569 -13.3287 0.5502 25 1 4.3415 -13.2006 -1.8713 26 6 6.1774 -7.5186 -0.3667 27 1 2.9711 0.4726 0.9130 28 1 2.9711 0.5556 -0.8649 29 1 4.8827 0.6319 0.0419 30 1 7.3224 0.9065 0.0439 31 1 8.7959 -1.0605 -0.0588 32 1 7.8419 -3.3200 -0.1647 33 1 6.9969 -4.9472 -0.2400 34 1 3.2993 -5.9606 -0.2666 35 1 2.5635 -11.0624 -0.5320 36 1 7.2525 -7.6205 -0.3788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139628110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:55 Heat of formation + Delta-G solvation = 117.559710 kcal Electronic energy + Delta-G solvation = -23417.622769 eV Core-core repulsion = 19802.839680 eV Total energy + Delta-G solvation = -3614.783088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27957 -39.32204 -37.97384 -36.83473 -34.38680 -33.26933 -31.77972 -31.38740 -30.24109 -30.11793 -27.76500 -25.13938 -23.86615 -22.96812 -21.19318 -20.61560 -19.44201 -18.74717 -17.76167 -17.37664 -16.74372 -15.84326 -15.57744 -15.48074 -15.35231 -15.04165 -14.73880 -14.65797 -14.39793 -14.00239 -13.44081 -13.36653 -12.95461 -12.91106 -12.83613 -12.77576 -12.30281 -11.95257 -11.68983 -11.48088 -11.41512 -11.29056 -10.99543 -10.52674 -10.46536 -10.27281 -9.97371 -9.27466 -9.18947 -9.02171 -8.81714 -8.07802 -7.55579 -6.71280 -6.57127 -4.24056 0.64418 0.94766 0.95648 2.14250 2.49843 2.80741 2.88229 2.99235 3.04454 3.10707 3.48974 3.50047 3.56751 3.81439 3.85550 4.44014 4.45625 4.56620 4.65101 4.69890 4.84512 4.90946 5.01048 5.02669 5.17809 5.34004 5.55208 5.84321 5.95946 6.14241 6.22093 6.41341 6.52839 6.86400 6.93351 7.07052 7.21118 7.24630 7.84004 8.10561 8.24494 8.57451 8.77001 9.35737 9.65153 10.38725 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002818 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.233098 B = 9932.088146 C =11590.119108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.225 3.775 3 C -0.091 4.091 4 S 0.062 5.938 5 C -0.055 4.055 6 C -0.145 4.145 7 C -0.079 4.079 8 C -0.134 4.134 9 C -0.069 4.069 10 C -0.107 4.107 11 C 0.532 3.468 12 O -0.508 6.508 13 N -0.611 5.611 14 C -0.062 4.062 15 C -0.028 4.028 16 N -0.260 5.260 17 N -0.141 5.141 18 C -0.322 4.322 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.083 4.083 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.396 0.604 34 H 0.177 0.823 35 H 0.275 0.725 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 19.554 0.915 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.094 4.094 3 C -0.240 4.240 4 S 0.307 5.693 5 C -0.170 4.170 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.155 4.155 9 C -0.089 4.089 10 C -0.117 4.117 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.252 5.252 14 C -0.168 4.168 15 C -0.204 4.204 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.234 4.234 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.231 0.769 34 H 0.194 0.806 35 H 0.085 0.915 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.173 17.393 0.817 18.474 hybrid contribution 2.803 1.158 0.047 3.033 sum 8.976 18.551 0.864 20.627 Atomic orbital electron populations 1.81271 1.12103 1.07563 1.08061 1.27704 0.93649 0.94137 0.93870 1.21579 0.86659 1.07420 1.08356 1.88060 0.94789 0.97134 1.89362 1.22138 0.98297 0.95365 1.01240 1.21082 0.96140 0.94920 1.04759 1.21175 0.92952 0.99085 0.96718 1.21087 1.00225 0.92133 1.02021 1.21309 0.93187 0.98107 0.96321 1.19661 0.93327 0.92248 1.06479 1.17909 0.86772 0.83742 0.79673 1.90587 1.13773 1.83720 1.50679 1.42315 1.08726 1.04017 1.70163 1.17232 0.93065 0.82354 1.24126 1.24140 0.94712 0.94064 1.07458 1.78277 0.99303 1.05901 1.25618 1.44576 1.02930 1.04569 1.38779 1.19926 0.95007 0.77416 1.53111 0.86542 1.25650 0.94661 1.01332 0.95506 1.70221 0.98871 1.35208 1.35108 0.85762 0.79328 0.80539 0.78507 1.18688 1.19899 1.19903 1.21247 0.95033 0.87245 1.19913 0.85522 0.85524 0.85204 0.85350 0.85240 0.85030 0.76923 0.80578 0.91457 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.78 18.54 42.15 0.78 -5.00 16 2 C 0.23 2.47 15.44 -20.76 -0.32 2.15 16 3 C -0.09 -0.68 4.82 34.37 0.17 -0.51 16 4 S 0.06 0.77 18.78 -107.50 -2.02 -1.25 16 5 C -0.06 -0.62 6.16 -38.46 -0.24 -0.86 16 6 C -0.14 -1.12 9.36 -39.41 -0.37 -1.49 16 7 C -0.08 -0.53 10.02 -39.55 -0.40 -0.93 16 8 C -0.13 -0.97 10.02 -39.61 -0.40 -1.37 16 9 C -0.07 -0.65 9.53 -39.20 -0.37 -1.02 16 10 C -0.11 -1.37 5.89 -104.79 -0.62 -1.98 16 11 C 0.53 9.10 7.72 -12.55 -0.10 9.01 16 12 O -0.51 -10.34 10.91 5.24 0.06 -10.29 16 13 N -0.61 -10.50 5.41 -10.98 -0.06 -10.56 16 14 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 15 C -0.03 -0.73 10.85 -17.03 -0.18 -0.92 16 16 N -0.26 -7.52 10.40 30.80 0.32 -7.20 16 17 N -0.14 -3.83 3.74 -11.40 -0.04 -3.88 16 18 C -0.32 -8.43 10.25 -14.81 -0.15 -8.59 16 19 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 20 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 21 N -0.77 -21.39 11.81 55.50 0.66 -20.74 16 22 Si 0.93 18.80 29.55 -169.99 -5.02 13.77 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.08 -1.92 11.49 -16.38 -0.19 -2.10 16 27 H 0.13 0.59 7.74 -51.92 -0.40 0.19 16 28 H 0.13 0.59 7.77 -51.93 -0.40 0.19 16 29 H 0.13 0.62 5.90 -52.49 -0.31 0.31 16 30 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.13 0.98 6.40 -52.48 -0.34 0.65 16 33 H 0.40 5.14 6.85 -40.82 -0.28 4.86 16 34 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.15 2.75 8.06 -52.49 -0.42 2.32 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -35.38 335.30 -6.97 -42.36 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -2.85 Total: 7.23 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.84 Total: -9.51 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 1.66 Total: -47.37 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.29 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.02 Total: -1.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.38 -6.97 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139628110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.918 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds