Wall clock time and date at job start Tue Mar 31 2020 15:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 S 1.81399 * 109.47349 * 2.67161 * 3 2 1 5 5 C 1.76201 * 103.00245 * 180.02562 * 4 3 2 6 6 C 1.39043 * 120.18414 * 0.29557 * 5 4 3 7 7 C 1.37905 * 120.05716 * 180.32146 * 6 5 4 8 8 C 1.38646 * 120.44082 * 359.68248 * 7 6 5 9 9 C 1.37737 * 120.36412 * 359.97438 * 8 7 6 10 10 C 1.39743 * 119.93521 * 0.03033 * 9 8 7 11 11 C 1.47369 * 120.21685 * 179.97438 * 10 9 8 12 12 O 1.21643 * 120.00111 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00155 * 359.97438 * 11 10 9 14 14 C 1.40540 * 120.00330 * 179.97438 * 13 11 10 15 15 C 1.40665 * 126.08409 * 0.03243 * 14 13 11 16 16 N 1.30901 * 108.39014 * 179.73277 * 15 14 13 17 17 N 1.40070 * 108.40965 * 359.97438 * 16 15 14 18 18 C 1.37317 * 126.06870 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99883 * 179.97438 * 18 17 16 20 20 C 1.38993 * 119.99918 * 359.97438 * 18 17 16 21 21 N 1.31285 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99710 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47346 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47045 * 120.00196 * 22 20 18 25 25 H 1.48502 * 109.46966 * 239.99584 * 22 20 18 26 26 C 1.35691 * 126.08267 * 179.71102 * 14 13 11 27 27 H 1.09005 * 109.47134 * 242.67097 * 3 2 1 28 28 H 1.08993 * 109.47463 * 122.67619 * 3 2 1 29 29 H 1.08001 * 119.96598 * 0.02562 * 6 5 4 30 30 H 1.08011 * 119.78042 * 179.70762 * 7 6 5 31 31 H 1.07997 * 119.81624 * 180.02562 * 8 7 6 32 32 H 1.08005 * 120.03087 * 179.97438 * 9 8 7 33 33 H 0.97007 * 119.99639 * 0.02562 * 13 11 10 34 34 H 1.08001 * 125.80452 * 359.70358 * 15 14 13 35 35 H 0.97005 * 120.00399 * 179.97438 * 21 20 18 36 36 H 1.07999 * 126.25303 * 0.25107 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2135 -1.7074 -0.0797 5 6 4.9642 -1.5083 -0.0697 6 6 5.5228 -0.2368 -0.0037 7 6 6.8933 -0.0836 -0.0027 8 6 7.7240 -1.1921 -0.0606 9 6 7.1897 -2.4603 -0.1193 10 6 5.8031 -2.6334 -0.1213 11 6 5.2248 -3.9874 -0.1845 12 8 4.0171 -4.1335 -0.1856 13 7 6.0338 -5.0638 -0.2412 14 6 5.4823 -6.3551 -0.3009 15 6 4.1117 -6.6710 -0.3095 16 7 3.9882 -7.9724 -0.3776 17 7 5.2696 -8.5369 -0.4156 18 6 5.5608 -9.8768 -0.4889 19 1 6.5894 -10.2052 -0.5133 20 6 4.5320 -10.8103 -0.5318 21 7 3.2817 -10.4110 -0.5017 22 14 4.9283 -12.6331 -0.6308 23 1 6.4014 -12.8190 -0.6506 24 1 4.3569 -13.3287 0.5502 25 1 4.3415 -13.2006 -1.8713 26 6 6.1774 -7.5186 -0.3667 27 1 2.9711 0.4726 0.9130 28 1 2.9711 0.5556 -0.8649 29 1 4.8827 0.6319 0.0419 30 1 7.3224 0.9065 0.0439 31 1 8.7959 -1.0605 -0.0588 32 1 7.8419 -3.3200 -0.1647 33 1 6.9969 -4.9472 -0.2400 34 1 3.2993 -5.9606 -0.2666 35 1 2.5635 -11.0624 -0.5320 36 1 7.2525 -7.6205 -0.3788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139628110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:54 Heat of formation + Delta-G solvation = 93.727333 kcal Electronic energy + Delta-G solvation = -23418.656218 eV Core-core repulsion = 19802.839680 eV Total energy + Delta-G solvation = -3615.816538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78098 -40.70182 -39.04823 -37.78550 -35.98310 -35.02408 -32.64473 -32.26941 -31.96344 -30.88395 -29.48930 -26.90795 -24.96260 -23.63707 -22.88031 -22.01321 -21.16910 -19.73011 -19.26659 -18.54011 -17.58366 -17.41794 -17.01827 -16.56888 -16.23191 -16.12494 -15.93184 -15.58924 -15.51446 -15.20550 -15.10131 -14.76177 -14.46195 -13.82333 -13.78675 -13.61297 -13.48632 -13.29115 -13.09649 -12.92687 -12.85185 -12.59053 -12.05601 -12.02396 -11.86494 -11.51328 -11.02957 -10.80109 -10.67814 -10.18447 -10.10072 -9.95726 -8.60884 -8.46220 -8.32814 -6.23003 -0.15289 0.12671 0.33677 1.27236 1.35864 1.40383 1.59488 1.64652 1.66450 1.94790 2.04809 2.07209 2.31249 2.50695 2.80691 2.92681 2.93363 3.10583 3.80063 3.85976 4.15832 4.18110 4.31665 4.43618 4.45676 4.52302 4.58953 4.68223 4.94547 5.01809 5.07466 5.23127 5.30606 5.38703 5.47612 5.54648 5.94400 5.97229 6.32546 6.39749 6.73258 6.74885 7.36463 7.48073 7.69408 8.53315 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002818 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.233098 B = 9932.088146 C =11590.119108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.248 3.752 3 C -0.064 4.064 4 S -0.042 6.042 5 C -0.055 4.055 6 C -0.140 4.140 7 C -0.064 4.064 8 C -0.128 4.128 9 C -0.070 4.070 10 C -0.141 4.141 11 C 0.528 3.472 12 O -0.548 6.548 13 N -0.609 5.609 14 C -0.042 4.042 15 C -0.058 4.058 16 N -0.311 5.311 17 N -0.168 5.168 18 C -0.352 4.352 19 H 0.143 0.857 20 C -0.008 4.008 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.239 1.239 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.080 4.080 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.418 0.582 34 H 0.166 0.834 35 H 0.275 0.725 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.070 22.411 1.032 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.070 4.070 3 C -0.213 4.213 4 S 0.203 5.797 5 C -0.170 4.170 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.148 4.148 9 C -0.091 4.091 10 C -0.150 4.150 11 C 0.318 3.682 12 O -0.429 6.429 13 N -0.254 5.254 14 C -0.148 4.148 15 C -0.233 4.233 16 N -0.143 5.143 17 N 0.063 4.937 18 C -0.483 4.483 19 H 0.160 0.840 20 C -0.220 4.220 21 N -0.454 5.454 22 Si 0.838 3.162 23 H -0.161 1.161 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.230 4.230 27 H 0.184 0.816 28 H 0.184 0.816 29 H 0.183 0.817 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.164 0.836 33 H 0.256 0.744 34 H 0.183 0.817 35 H 0.085 0.915 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.670 20.300 0.936 22.953 hybrid contribution 1.543 0.632 0.029 1.668 sum 12.213 20.932 0.965 24.254 Atomic orbital electron populations 1.81287 1.14179 1.09421 1.10397 1.28333 0.94365 0.92357 0.91932 1.21699 0.83834 1.03681 1.12053 1.88377 0.98367 1.02695 1.90212 1.22099 0.96080 0.96536 1.02296 1.21545 0.97412 0.94216 1.03202 1.21740 0.92247 1.00833 0.93562 1.21540 1.02150 0.91100 1.00033 1.21538 0.91620 1.00120 0.95777 1.19403 0.95050 0.89857 1.10731 1.18796 0.86381 0.85356 0.77696 1.90597 1.15757 1.84989 1.51583 1.42260 1.09967 1.02109 1.71044 1.17291 0.91654 0.84745 1.21136 1.24151 0.96478 0.93518 1.09161 1.78157 1.01556 1.07229 1.27408 1.44854 1.02879 1.05664 1.40350 1.20664 0.96479 0.77542 1.53638 0.84016 1.26899 0.94086 1.06745 0.94232 1.70413 1.00369 1.37087 1.37514 0.84530 0.80289 0.73243 0.78092 1.16120 1.19890 1.19896 1.22006 0.96687 0.86369 1.17934 0.81624 0.81631 0.81696 0.81241 0.81891 0.83604 0.74403 0.81732 0.91503 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.60 18.54 20.01 0.37 -13.23 16 2 C 0.25 5.27 15.44 89.44 1.38 6.65 16 3 C -0.06 -0.77 4.82 70.18 0.34 -0.44 16 4 S -0.04 -1.05 18.78 -56.49 -1.06 -2.11 16 5 C -0.05 -1.14 6.16 23.00 0.14 -1.00 16 6 C -0.14 -1.50 9.36 22.38 0.21 -1.29 16 7 C -0.06 -0.46 10.02 22.29 0.22 -0.23 16 8 C -0.13 -1.17 10.02 22.25 0.22 -0.95 16 9 C -0.07 -1.11 9.53 22.52 0.21 -0.89 16 10 C -0.14 -3.44 5.89 -19.98 -0.12 -3.56 16 11 C 0.53 18.59 7.72 86.65 0.67 19.26 16 12 O -0.55 -23.90 10.91 -4.17 -0.05 -23.95 16 13 N -0.61 -21.01 5.41 -306.90 -1.66 -22.67 16 14 C -0.04 -1.94 6.90 37.75 0.26 -1.68 16 15 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 16 N -0.31 -19.17 10.40 -56.46 -0.59 -19.75 16 17 N -0.17 -9.44 3.74 -189.99 -0.71 -10.15 16 18 C -0.35 -18.74 10.25 84.02 0.86 -17.88 16 19 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 20 C -0.01 -0.44 5.50 84.96 0.47 0.03 16 21 N -0.83 -48.57 11.81 21.66 0.26 -48.31 16 22 Si 1.02 39.00 29.55 68.60 2.03 41.03 16 23 H -0.24 -8.08 7.11 99.48 0.71 -7.37 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 26 C -0.08 -3.67 11.49 83.38 0.96 -2.72 16 27 H 0.17 0.79 7.74 -2.39 -0.02 0.77 16 28 H 0.17 0.79 7.77 -2.39 -0.02 0.77 16 29 H 0.17 0.51 5.90 -2.91 -0.02 0.49 16 30 H 0.17 -0.06 8.06 -2.90 -0.02 -0.08 16 31 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.15 1.72 6.40 -2.91 -0.02 1.70 16 33 H 0.42 10.26 6.85 -92.70 -0.64 9.63 16 34 H 0.17 9.37 5.91 -2.91 -0.02 9.35 16 35 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 Total: -1.00 -88.25 335.30 5.88 -82.38 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.53 Total: 23.74 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 6.76 Total: -6.98 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -2.33 Total: -114.11 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -1.06 Total: -2.11 kcal Total: -88.25 5.88 -82.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139628110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.105 kcal (2) G-P(sol) polarization free energy of solvation -88.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds