Wall clock time and date at job start Tue Mar 31 2020 14:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48500 * 109.46768 * 270.00351 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00171 * 3 2 1 6 6 H 1.48499 * 109.46839 * 150.00348 * 3 2 1 7 7 C 1.37870 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47175 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54270 * 68.36923 * 12 11 10 14 14 O 1.42108 * 110.54029 * 291.62746 * 12 11 10 15 15 N 1.65598 * 104.45311 * 180.02562 * 12 11 10 16 16 C 1.46073 * 118.67116 * 270.02188 * 15 12 11 17 17 C 1.53581 * 108.78274 * 233.54227 * 16 15 12 18 18 S 1.81776 * 107.83491 * 294.13701 * 17 16 15 19 19 C 1.76131 * 102.46596 * 46.88615 * 18 17 16 20 20 C 1.39297 * 119.73957 * 164.39678 * 19 18 17 21 21 C 1.38057 * 119.01840 * 179.91320 * 20 19 18 22 22 N 1.31961 * 120.70738 * 359.59392 * 21 20 19 23 23 C 1.31877 * 122.13876 * 0.30718 * 22 21 20 24 24 C 1.39024 * 120.89128 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00007 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47032 * 59.99986 * 9 7 2 27 27 H 1.08996 * 109.47158 * 300.00665 * 9 7 2 28 28 H 1.08993 * 109.47199 * 60.00367 * 10 9 7 29 29 H 1.09003 * 109.47227 * 300.00072 * 10 9 7 30 30 H 1.09005 * 109.47233 * 60.00293 * 11 10 9 31 31 H 1.09003 * 109.46928 * 300.00042 * 11 10 9 32 32 H 1.09002 * 109.58659 * 353.32918 * 16 15 12 33 33 H 1.09004 * 109.58915 * 113.60946 * 16 15 12 34 34 H 1.09001 * 109.78900 * 53.71776 * 17 16 15 35 35 H 1.08995 * 109.79303 * 174.49423 * 17 16 15 36 36 H 1.07998 * 120.48708 * 359.53268 * 20 19 18 37 37 H 1.08003 * 119.64530 * 179.79358 * 21 20 19 38 38 H 1.07997 * 119.55645 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 16 2.6593 -6.3658 -0.0004 13 8 3.3552 -6.4261 1.2370 14 8 3.3570 -6.4260 -1.2370 15 7 1.7090 -7.7220 -0.0019 16 6 1.3051 -8.2961 1.2791 17 6 1.6917 -9.7824 1.2987 18 16 0.6920 -10.6343 0.0421 19 6 0.8542 -9.5747 -1.3554 20 6 0.5005 -10.0397 -2.6199 21 6 0.6320 -9.1959 -3.7047 22 7 1.0781 -7.9637 -3.5498 23 6 1.4213 -7.4850 -2.3699 24 6 1.3264 -8.2697 -1.2262 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5570 0.8896 28 1 2.8720 -3.6042 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.8541 -5.0446 -0.8915 31 1 0.8535 -5.0450 0.8886 32 1 1.8146 -7.7754 2.0898 33 1 0.2266 -8.1953 1.4009 34 1 2.7505 -9.8914 1.0640 35 1 1.4867 -10.2041 2.2827 36 1 0.1347 -11.0474 -2.7506 37 1 0.3639 -9.5471 -4.6902 38 1 1.7810 -6.4698 -2.2910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150834074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:30 Heat of formation + Delta-G solvation = -27.561529 kcal Electronic energy + Delta-G solvation = -23616.748910 eV Core-core repulsion = 20098.824092 eV Total energy + Delta-G solvation = -3517.924817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64499 -37.68798 -37.34528 -36.15270 -34.83100 -32.51310 -32.29659 -32.03120 -29.55861 -27.97083 -24.72200 -24.38331 -23.72367 -22.56373 -20.72569 -19.73153 -18.32397 -18.27440 -17.51254 -16.91107 -16.23728 -15.99651 -15.87926 -15.64786 -14.87837 -14.56542 -14.51077 -14.39734 -14.14902 -13.85986 -13.47289 -13.10515 -12.71838 -12.59639 -12.41080 -12.27527 -12.19533 -11.98413 -11.69566 -11.54059 -11.35335 -10.98382 -10.95580 -10.74887 -10.53976 -10.40433 -10.06353 -9.67816 -9.51159 -9.22567 -8.71006 -8.45672 -7.91656 -6.10487 -4.14219 -0.06221 0.77597 0.84787 1.07961 1.84246 2.14840 3.27884 3.34240 3.37598 3.42163 3.67107 3.79453 3.83438 4.20673 4.28082 4.38278 4.45780 4.55528 4.67841 4.80350 4.90168 4.94944 5.00396 5.12553 5.25941 5.26149 5.37596 5.49994 5.67410 5.69309 5.88619 6.11152 6.27914 6.43384 6.73772 7.49243 7.57736 7.77391 7.86547 8.25668 8.91689 9.51039 11.00606 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.003175 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.605491 B = 8818.032840 C = 9421.391989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.600 4.600 12 S 2.574 3.426 13 O -0.943 6.943 14 O -0.939 6.939 15 N -0.938 5.938 16 C 0.098 3.902 17 C -0.121 4.121 18 S -0.092 6.092 19 C -0.080 4.080 20 C -0.126 4.126 21 C 0.084 3.916 22 N -0.450 5.450 23 C 0.084 3.916 24 C 0.122 3.878 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -23.248 0.469 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.733 4.733 12 S 2.674 3.326 13 O -0.934 6.934 14 O -0.929 6.929 15 N -0.760 5.760 16 C -0.028 4.028 17 C -0.270 4.270 18 S 0.149 5.851 19 C -0.205 4.205 20 C -0.152 4.152 21 C -0.074 4.074 22 N -0.159 5.159 23 C -0.080 4.080 24 C 0.017 3.983 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.182 0.818 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.549 -23.704 0.067 23.711 hybrid contribution 0.345 1.618 0.649 1.777 sum -0.203 -22.086 0.716 22.099 Atomic orbital electron populations 1.69954 1.06096 1.26891 1.50339 1.25014 0.94890 0.99398 0.94980 0.86547 0.79856 0.83110 0.78267 1.20491 1.21144 1.19727 1.21216 0.93255 0.90769 1.51423 0.92311 1.19074 0.93447 0.90247 0.97954 1.21578 0.99520 0.91160 1.02310 1.30573 1.15813 1.14798 1.12091 1.06498 0.76124 0.75242 0.74692 1.93580 1.69590 1.85459 1.44734 1.93621 1.70286 1.85194 1.43842 1.55628 1.66865 1.44778 1.08719 1.21885 1.02787 0.93679 0.84488 1.24106 1.03364 0.97921 1.01658 1.85442 1.63630 1.31899 1.04109 1.21503 1.05728 0.94472 0.98786 1.21743 1.01364 1.01592 0.90527 1.22743 0.96500 0.89220 0.98913 1.67654 1.09066 1.14857 1.24345 1.23375 0.97375 1.00820 0.86418 1.18141 1.00900 0.93054 0.86181 0.92815 0.95883 0.96000 0.91317 0.91200 0.84783 0.84738 0.85631 0.88583 0.88080 0.85087 0.83784 0.81813 0.80946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.76 4.97 -27.89 -0.14 0.62 16 10 C -0.11 -2.02 5.16 -26.73 -0.14 -2.16 16 11 C -0.60 -8.62 6.02 37.16 0.22 -8.40 16 12 S 2.57 36.29 4.75 -107.50 -0.51 35.78 16 13 O -0.94 -14.86 16.38 -57.54 -0.94 -15.80 16 14 O -0.94 -15.69 14.39 -57.54 -0.83 -16.52 16 15 N -0.94 -11.06 3.09 -58.51 -0.18 -11.24 16 16 C 0.10 0.86 6.20 -3.97 -0.02 0.83 16 17 C -0.12 -0.94 6.68 37.46 0.25 -0.69 16 18 S -0.09 -0.84 22.16 -107.50 -2.38 -3.22 16 19 C -0.08 -0.92 6.08 -38.76 -0.24 -1.15 16 20 C -0.13 -1.24 9.84 -39.25 -0.39 -1.63 16 21 C 0.08 0.89 11.19 -17.56 -0.20 0.70 16 22 N -0.45 -6.29 10.34 -13.06 -0.14 -6.43 16 23 C 0.08 1.20 9.43 -17.24 -0.16 1.04 16 24 C 0.12 1.57 6.22 -83.67 -0.52 1.05 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.13 1.76 7.53 -51.92 -0.39 1.37 16 31 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.13 1.01 6.64 -51.93 -0.34 0.66 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.17 2.52 4.61 -52.49 -0.24 2.28 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -34.45 337.72 -10.66 -45.11 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.75 Total: -0.57 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -1.74 Total: -23.04 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.42 Total: -43.03 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.77 Total: -32.32 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -2.89 Total: 32.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.45 -10.66 -45.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150834074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.548 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds