Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48500 * 109.46768 * 270.00351 * 3 2 1 5 5 H 1.48498 * 109.47033 * 30.00171 * 3 2 1 6 6 H 1.48499 * 109.46839 * 150.00348 * 3 2 1 7 7 C 1.37870 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47175 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.47380 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54270 * 68.36923 * 12 11 10 14 14 O 1.42108 * 110.54029 * 291.62746 * 12 11 10 15 15 N 1.65598 * 104.45311 * 180.02562 * 12 11 10 16 16 C 1.46073 * 118.67116 * 270.02188 * 15 12 11 17 17 C 1.53581 * 108.78274 * 233.54227 * 16 15 12 18 18 S 1.81776 * 107.83491 * 294.13701 * 17 16 15 19 19 C 1.76131 * 102.46596 * 46.88615 * 18 17 16 20 20 C 1.39297 * 119.73957 * 164.39678 * 19 18 17 21 21 C 1.38057 * 119.01840 * 179.91320 * 20 19 18 22 22 N 1.31961 * 120.70738 * 359.59392 * 21 20 19 23 23 C 1.31877 * 122.13876 * 0.30718 * 22 21 20 24 24 C 1.39024 * 120.89128 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00007 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47032 * 59.99986 * 9 7 2 27 27 H 1.08996 * 109.47158 * 300.00665 * 9 7 2 28 28 H 1.08993 * 109.47199 * 60.00367 * 10 9 7 29 29 H 1.09003 * 109.47227 * 300.00072 * 10 9 7 30 30 H 1.09005 * 109.47233 * 60.00293 * 11 10 9 31 31 H 1.09003 * 109.46928 * 300.00042 * 11 10 9 32 32 H 1.09002 * 109.58659 * 353.32918 * 16 15 12 33 33 H 1.09004 * 109.58915 * 113.60946 * 16 15 12 34 34 H 1.09001 * 109.78900 * 53.71776 * 17 16 15 35 35 H 1.08995 * 109.79303 * 174.49423 * 17 16 15 36 36 H 1.07998 * 120.48708 * 359.53268 * 20 19 18 37 37 H 1.08003 * 119.64530 * 179.79358 * 21 20 19 38 38 H 1.07997 * 119.55645 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 16 2.6593 -6.3658 -0.0004 13 8 3.3552 -6.4261 1.2370 14 8 3.3570 -6.4260 -1.2370 15 7 1.7090 -7.7220 -0.0019 16 6 1.3051 -8.2961 1.2791 17 6 1.6917 -9.7824 1.2987 18 16 0.6920 -10.6343 0.0421 19 6 0.8542 -9.5747 -1.3554 20 6 0.5005 -10.0397 -2.6199 21 6 0.6320 -9.1959 -3.7047 22 7 1.0781 -7.9637 -3.5498 23 6 1.4213 -7.4850 -2.3699 24 6 1.3264 -8.2697 -1.2262 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5570 0.8896 28 1 2.8720 -3.6042 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.8541 -5.0446 -0.8915 31 1 0.8535 -5.0450 0.8886 32 1 1.8146 -7.7754 2.0898 33 1 0.2266 -8.1953 1.4009 34 1 2.7505 -9.8914 1.0640 35 1 1.4867 -10.2041 2.2827 36 1 0.1347 -11.0474 -2.7506 37 1 0.3639 -9.5471 -4.6902 38 1 1.7810 -6.4698 -2.2910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150834074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = -50.901199 kcal Electronic energy + Delta-G solvation = -23617.760994 eV Core-core repulsion = 20098.824092 eV Total energy + Delta-G solvation = -3518.936901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52498 -38.75305 -38.32804 -37.36834 -36.54647 -34.23039 -33.35657 -32.81095 -30.39113 -29.75301 -25.80739 -25.48903 -25.04341 -23.42814 -22.37404 -20.75028 -19.37688 -19.19013 -18.61900 -18.36023 -17.58436 -17.05627 -16.86056 -16.60787 -16.50473 -15.90359 -15.66833 -15.36744 -14.94325 -14.70320 -14.51427 -14.27537 -14.12851 -13.89327 -13.60106 -13.45237 -13.42859 -13.22308 -13.05495 -12.80668 -12.73766 -12.63967 -12.36657 -12.18510 -11.80976 -11.52976 -11.40814 -11.27066 -11.04077 -10.58578 -10.55765 -9.58131 -8.65552 -8.23697 -6.34798 -1.19840 -0.07727 -0.03006 0.35506 1.13446 1.14301 1.40347 1.40925 1.52061 2.36896 2.41405 2.68228 2.75063 2.95490 3.10329 3.41131 3.49107 3.60511 3.65049 3.73839 3.91409 3.98833 4.17181 4.28049 4.30314 4.47210 4.47731 4.56172 4.65842 4.67260 4.83362 4.85373 5.00795 5.09164 5.43424 5.58595 5.59625 5.77563 6.17259 6.80793 6.89185 7.34842 8.87746 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.003175 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.605491 B = 8818.032840 C = 9421.391989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.601 4.601 12 S 2.603 3.397 13 O -0.959 6.959 14 O -0.968 6.968 15 N -0.932 5.932 16 C 0.084 3.916 17 C -0.121 4.121 18 S -0.073 6.073 19 C -0.093 4.093 20 C -0.118 4.118 21 C 0.082 3.918 22 N -0.482 5.482 23 C 0.054 3.946 24 C 0.109 3.891 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.007 0.993 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.197 0.803 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 -25.121 1.137 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.733 4.733 12 S 2.703 3.297 13 O -0.949 6.949 14 O -0.958 6.958 15 N -0.756 5.756 16 C -0.040 4.040 17 C -0.271 4.271 18 S 0.168 5.832 19 C -0.218 4.218 20 C -0.144 4.144 21 C -0.076 4.076 22 N -0.192 5.192 23 C -0.108 4.108 24 C 0.004 3.996 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.184 0.816 36 H 0.195 0.805 37 H 0.214 0.786 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.602 -25.566 0.751 25.585 hybrid contribution 0.306 2.052 0.435 2.120 sum -0.296 -23.514 1.186 23.546 Atomic orbital electron populations 1.70069 1.07634 1.27913 1.51309 1.25919 0.95785 1.03205 0.94560 0.85493 0.78778 0.78577 0.78527 1.19865 1.20574 1.18744 1.21722 0.93792 0.92388 1.51123 0.92001 1.18961 0.93978 0.91674 0.96121 1.21355 0.98740 0.91764 1.02603 1.30503 1.16088 1.12904 1.13774 1.05420 0.75558 0.75191 0.73542 1.93553 1.70151 1.85908 1.45302 1.93586 1.71359 1.85716 1.45151 1.55319 1.66724 1.43885 1.09676 1.22276 1.04251 0.94411 0.83107 1.24261 1.02786 0.97096 1.02950 1.85372 1.63516 1.31063 1.03289 1.21887 1.05026 0.94276 1.00611 1.22155 0.99840 1.02721 0.89643 1.23347 0.95264 0.88200 1.00800 1.67613 1.10333 1.16750 1.24521 1.23257 0.99130 1.00914 0.87527 1.18134 1.01784 0.93777 0.85872 0.92629 0.97953 0.97490 0.90797 0.91293 0.83895 0.82519 0.84742 0.86594 0.88685 0.81606 0.80539 0.78586 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.57 4.97 29.85 0.15 1.71 16 10 C -0.11 -4.10 5.16 30.59 0.16 -3.94 16 11 C -0.60 -17.39 6.02 71.98 0.43 -16.96 16 12 S 2.60 73.12 4.75 -56.49 -0.27 72.85 16 13 O -0.96 -29.51 16.38 -127.65 -2.09 -31.60 16 14 O -0.97 -33.17 14.39 -127.65 -1.84 -35.01 16 15 N -0.93 -21.10 3.09 -339.04 -1.05 -22.15 16 16 C 0.08 1.30 6.20 86.66 0.54 1.83 16 17 C -0.12 -1.54 6.68 72.18 0.48 -1.06 16 18 S -0.07 -1.14 22.16 -56.49 -1.25 -2.39 16 19 C -0.09 -1.96 6.08 22.80 0.14 -1.82 16 20 C -0.12 -2.04 9.84 22.48 0.22 -1.82 16 21 C 0.08 1.62 11.19 84.63 0.95 2.56 16 22 N -0.48 -13.53 10.34 -195.24 -2.02 -15.55 16 23 C 0.05 1.58 9.43 84.87 0.80 2.38 16 24 C 0.11 2.74 6.22 38.39 0.24 2.98 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.14 3.88 7.53 -2.39 -0.02 3.86 16 31 H 0.16 3.75 8.14 -2.39 -0.02 3.73 16 32 H 0.13 1.85 6.64 -2.39 -0.02 1.84 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.16 4.89 4.61 -2.91 -0.01 4.88 16 Total: -1.00 -75.59 337.72 -0.32 -75.92 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.08 Total: 11.22 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 4.80 Total: -44.09 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -2.78 Total: -92.67 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -3.93 Total: -66.61 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 71.98 SS G_CDS: -1.52 Total: 70.46 kcal Total: -75.59 -0.32 -75.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150834074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.015 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds