Wall clock time and date at job start Tue Mar 31 2020 15:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39629 * 119.95934 * 35.57007 * 3 2 1 5 5 C 1.37991 * 120.03538 * 180.28125 * 4 3 2 6 6 F 1.35102 * 120.01412 * 179.97438 * 5 4 3 7 7 C 1.39953 * 119.96432 * 0.02562 * 5 4 3 8 8 C 1.47565 * 120.04373 * 179.97438 * 7 5 4 9 9 O 1.21590 * 119.99672 * 270.02284 * 8 7 5 10 10 N 1.34780 * 119.99922 * 90.01605 * 8 7 5 11 11 C 1.39108 * 119.99482 * 175.71890 * 10 8 7 12 12 C 1.39522 * 119.83356 * 215.03522 * 11 10 8 13 13 C 1.36357 * 120.16407 * 179.75868 * 12 11 10 14 14 C 1.40880 * 119.83462 * 0.53805 * 13 12 11 15 15 C 1.41121 * 120.16588 * 179.69507 * 14 13 12 16 16 H 1.07996 * 120.00289 * 214.80372 * 15 14 13 17 17 C 1.39922 * 120.00029 * 34.79930 * 15 14 13 18 18 N 1.30870 * 119.99547 * 355.56447 * 17 15 14 19 19 Si 1.86794 * 120.00034 * 175.55827 * 17 15 14 20 20 H 1.48495 * 109.47284 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47238 * 120.00578 * 19 17 15 22 22 H 1.48506 * 109.47091 * 240.00262 * 19 17 15 23 23 C 1.40886 * 119.67291 * 359.71260 * 14 13 12 24 24 C 1.36358 * 119.83263 * 0.02562 * 23 14 13 25 25 C 1.39962 * 119.91667 * 359.97438 * 7 5 4 26 26 F 1.35104 * 120.01613 * 180.02562 * 25 7 5 27 27 C 1.37983 * 119.96748 * 0.02562 * 25 7 5 28 28 H 1.07993 * 119.98067 * 0.27424 * 4 3 2 29 29 H 0.96997 * 120.00132 * 355.71965 * 10 8 7 30 30 H 1.08000 * 119.91534 * 359.97438 * 12 11 10 31 31 H 1.08004 * 120.08154 * 180.24844 * 13 12 11 32 32 H 0.97004 * 119.99506 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.08191 * 179.97438 * 23 14 13 34 34 H 1.08001 * 119.91488 * 179.97438 * 24 23 14 35 35 H 1.07993 * 119.98679 * 179.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2657 -0.9830 -0.7037 5 6 4.6456 -0.9873 -0.7000 6 9 5.3203 -1.9396 -1.3806 7 6 5.3458 -0.0053 0.0100 8 6 6.8214 -0.0086 0.0157 9 8 7.4247 -0.6251 0.8726 10 7 7.5004 0.6717 -0.9292 11 6 8.8885 0.7426 -0.8727 12 6 9.5417 1.9040 -1.2864 13 6 10.9018 1.9825 -1.2292 14 6 11.6483 0.8831 -0.7616 15 6 13.0566 0.9545 -0.7056 16 1 13.6503 0.0745 -0.9044 17 6 13.6838 2.1654 -0.3925 18 7 12.9698 3.2511 -0.2370 19 14 15.5402 2.2323 -0.1962 20 1 16.1109 0.8801 -0.4217 21 1 16.1089 3.1807 -1.1874 22 1 15.8768 2.6896 1.1760 23 6 10.9820 -0.2882 -0.3505 24 6 9.6211 -0.3502 -0.4083 25 6 4.6446 0.9799 0.7148 26 9 5.3185 1.9291 1.4005 27 6 3.2648 0.9812 0.7090 28 1 2.7251 -1.7409 -1.2510 29 1 7.0212 1.1118 -1.6485 30 1 8.9684 2.7441 -1.6495 31 1 11.4058 2.8837 -1.5460 32 1 13.4046 4.0905 -0.0195 33 1 11.5478 -1.1351 0.0087 34 1 9.1089 -1.2476 -0.0939 35 1 2.7235 1.7410 1.2530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151498876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:03 Heat of formation + Delta-G solvation = -55.172351 kcal Electronic energy + Delta-G solvation = -25631.892611 eV Core-core repulsion = 21423.486160 eV Total energy + Delta-G solvation = -4208.406450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.28439 -50.26442 -41.52726 -40.20798 -39.04574 -37.53003 -36.26994 -34.81485 -33.01515 -31.81046 -31.50525 -30.72209 -27.48654 -26.03940 -24.23028 -23.56149 -22.78470 -21.66980 -20.82580 -19.43102 -19.13894 -18.76881 -18.18333 -17.70676 -17.23619 -17.04516 -16.98467 -16.55297 -16.54133 -15.99567 -15.68411 -15.60017 -15.07080 -14.83278 -14.71961 -14.67106 -14.47646 -14.03306 -13.64914 -13.58003 -13.51329 -13.29545 -13.17924 -12.97297 -12.88675 -12.77012 -12.50997 -11.83510 -11.41580 -11.31485 -11.03354 -10.74128 -10.37725 -10.08838 -9.49439 -8.79515 -8.52146 -6.34859 -0.98115 -0.32239 0.66722 1.11694 1.31607 1.36870 1.40632 1.40776 1.54275 1.57971 1.99687 2.19052 2.24506 2.40661 2.68174 2.78262 3.11310 3.36084 3.51331 3.64380 3.67581 3.97926 4.35803 4.40396 4.41257 4.50871 4.62518 4.78083 4.89620 5.06556 5.12103 5.26528 5.28889 5.38485 5.67588 5.85141 5.95034 6.10229 6.23865 6.35920 6.48894 6.66158 6.94066 6.95289 7.13311 8.40755 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.031186 B = 0.002493 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.615916 B =11229.675463 C =11709.156346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.283 3.717 3 C 0.061 3.939 4 C -0.088 4.088 5 C 0.160 3.840 6 F -0.124 7.124 7 C -0.177 4.177 8 C 0.545 3.455 9 O -0.553 6.553 10 N -0.625 5.625 11 C 0.011 3.989 12 C -0.111 4.111 13 C -0.160 4.160 14 C 0.070 3.930 15 C -0.494 4.494 16 H 0.074 0.926 17 C 0.027 3.973 18 N -0.838 5.838 19 Si 0.989 3.011 20 H -0.260 1.260 21 H -0.262 1.262 22 H -0.270 1.270 23 C -0.221 4.221 24 C -0.093 4.093 25 C 0.158 3.842 26 F -0.126 7.126 27 C -0.089 4.089 28 H 0.192 0.808 29 H 0.419 0.581 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.286 0.714 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.483 -1.974 -2.376 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.033 4.033 3 C 0.058 3.942 4 C -0.109 4.109 5 C 0.139 3.861 6 F -0.102 7.102 7 C -0.183 4.183 8 C 0.331 3.669 9 O -0.431 6.431 10 N -0.269 5.269 11 C -0.082 4.082 12 C -0.131 4.131 13 C -0.180 4.180 14 C 0.068 3.932 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.185 4.185 18 N -0.466 5.466 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.195 1.195 23 C -0.241 4.241 24 C -0.113 4.113 25 C 0.137 3.863 26 F -0.105 7.105 27 C -0.110 4.110 28 H 0.209 0.791 29 H 0.257 0.743 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.768 -2.149 -1.727 20.950 hybrid contribution 1.718 0.241 0.029 1.735 sum -19.050 -1.908 -1.698 19.221 Atomic orbital electron populations 1.81386 1.12726 1.07847 1.08128 1.24995 0.91633 0.93342 0.93356 1.15157 0.84192 0.95963 0.98920 1.21271 0.90122 0.99885 0.99611 1.16998 0.89805 0.86311 0.92950 1.91618 1.80524 1.61174 1.76871 1.20065 0.92976 0.99998 1.05261 1.18353 0.87193 0.79954 0.81355 1.90827 1.69988 1.43501 1.38754 1.42808 1.05067 1.51905 1.27139 1.17267 0.81690 0.95574 1.13650 1.20558 0.94778 0.95291 1.02507 1.21189 0.92821 1.00521 1.03436 1.18070 0.94394 0.91812 0.88935 1.19763 0.92134 0.96642 1.43893 0.90815 1.26758 1.05473 0.94130 0.92145 1.69823 1.39173 1.00796 1.36771 0.85046 0.75837 0.79408 0.78701 1.18402 1.18702 1.19458 1.20930 0.93833 1.00127 1.09218 1.20504 0.93654 0.97055 1.00115 1.17042 0.89867 0.86252 0.93102 1.91622 1.80626 1.61506 1.76703 1.21259 0.90094 1.00146 0.99517 0.79090 0.74283 0.85512 0.86099 0.90377 0.88406 0.87485 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.92 18.54 19.00 0.35 -6.56 16 2 C 0.28 2.97 15.31 88.33 1.35 4.33 16 3 C 0.06 0.49 5.73 -21.36 -0.12 0.37 16 4 C -0.09 -0.75 9.71 22.55 0.22 -0.53 16 5 C 0.16 2.65 7.28 22.63 0.16 2.82 16 6 F -0.12 -2.62 16.82 44.97 0.76 -1.86 16 7 C -0.18 -3.92 5.64 -19.98 -0.11 -4.03 16 8 C 0.55 18.27 6.34 86.70 0.55 18.82 16 9 O -0.55 -23.88 14.52 -4.00 -0.06 -23.94 16 10 N -0.63 -20.73 5.30 -305.94 -1.62 -22.35 16 11 C 0.01 0.49 6.30 38.60 0.24 0.73 16 12 C -0.11 -4.90 9.90 22.14 0.22 -4.68 16 13 C -0.16 -8.22 8.61 22.48 0.19 -8.02 16 14 C 0.07 3.85 5.55 -21.28 -0.12 3.73 16 15 C -0.49 -26.88 9.02 23.39 0.21 -26.67 16 16 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 17 C 0.03 1.38 5.42 85.24 0.46 1.84 16 18 N -0.84 -43.68 10.60 21.82 0.23 -43.45 16 19 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.22 -11.46 9.74 22.48 0.22 -11.24 16 24 C -0.09 -4.49 8.61 22.14 0.19 -4.30 16 25 C 0.16 2.78 7.28 22.63 0.16 2.95 16 26 F -0.13 -2.96 16.82 44.97 0.76 -2.20 16 27 C -0.09 -0.82 9.71 22.55 0.22 -0.60 16 28 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 29 H 0.42 10.29 8.80 -92.71 -0.82 9.47 16 30 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.12 6.46 6.13 -2.91 -0.02 6.44 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 33 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.11 5.11 6.22 -2.91 -0.02 5.10 16 35 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -70.65 333.15 6.88 -63.77 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.38 Total: 20.30 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.05 Total: -24.50 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.04 Total: -72.36 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.51 Total: -4.06 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -70.65 6.88 -63.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151498876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.596 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds