Wall clock time and date at job start Tue Mar 31 2020 14:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47113 * 239.99649 * 3 2 1 5 5 H 1.48491 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47096 * 119.99693 * 3 2 1 7 7 C 1.40131 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.46127 * 119.99996 * 0.02562 * 7 2 1 10 10 O 1.21764 * 119.99743 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00402 * 179.97438 * 9 7 2 12 12 C 1.39560 * 120.00358 * 184.94310 * 11 9 7 13 13 C 1.39060 * 120.06046 * 324.43730 * 12 11 9 14 14 C 1.38011 * 119.94062 * 180.24681 * 13 12 11 15 15 C 1.38569 * 120.06304 * 0.02692 * 14 13 12 16 16 F 1.35096 * 119.94456 * 180.02562 * 15 14 13 17 17 C 1.38537 * 120.11639 * 359.97438 * 15 14 13 18 18 S 1.76198 * 119.97270 * 180.02562 * 17 15 14 19 19 O 1.42103 * 106.40205 * 177.79559 * 18 17 15 20 20 O 1.42101 * 106.39981 * 310.71132 * 18 17 15 21 21 N 1.65596 * 107.21969 * 64.25183 * 18 17 15 22 22 C 1.46494 * 119.99941 * 64.22236 * 21 18 17 23 23 C 1.53001 * 117.49997 * 210.85310 * 22 21 18 24 24 C 1.52995 * 60.00152 * 252.50991 * 23 22 21 25 25 C 1.38058 * 120.05748 * 359.97438 * 17 15 14 26 26 H 0.97003 * 120.00416 * 0.02562 * 1 2 3 27 27 H 0.97007 * 119.99528 * 4.94653 * 11 9 7 28 28 H 1.08003 * 120.02642 * 0.25496 * 13 12 11 29 29 H 1.08010 * 119.96842 * 180.02562 * 14 13 12 30 30 H 0.97003 * 120.00161 * 244.22478 * 21 18 17 31 31 H 1.09000 * 115.55239 * 356.56298 * 22 21 18 32 32 H 1.09005 * 117.49795 * 0.02562 * 23 22 21 33 33 H 1.09001 * 117.50033 * 145.02008 * 23 22 21 34 34 H 1.08993 * 117.50191 * 252.50666 * 24 23 22 35 35 H 1.09005 * 117.49906 * 107.48604 * 24 23 22 36 36 H 1.07995 * 120.02823 * 180.02562 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6965 1.2126 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2764 -2.4791 0.0005 10 8 0.0587 -2.4791 0.0005 11 7 1.9502 -3.6462 0.0005 12 6 1.2563 -4.8526 -0.1036 13 6 0.0114 -4.9945 0.4996 14 6 -0.6703 -6.1903 0.3994 15 6 -0.1152 -7.2492 -0.3011 16 9 -0.7848 -8.4185 -0.3981 17 6 1.1249 -7.1106 -0.9030 18 16 1.8269 -8.4593 -1.7933 19 8 3.0582 -7.9909 -2.3262 20 8 1.7293 -9.5947 -0.9444 21 7 0.8400 -8.7581 -3.0891 22 6 0.6788 -7.7459 -4.1357 23 6 -0.6648 -7.6922 -4.8657 24 6 0.5735 -8.2352 -5.5816 25 6 1.8107 -5.9163 -0.8067 26 1 -0.4851 0.8400 -0.0004 27 1 2.9176 -3.6478 0.0730 28 1 -0.4216 -4.1696 1.0460 29 1 -1.6374 -6.3009 0.8674 30 1 0.3686 -9.6033 -3.1550 31 1 1.1946 -6.8018 -3.9603 32 1 -1.4290 -8.4098 -4.5668 33 1 -1.0333 -6.7127 -5.1704 34 1 1.0198 -7.6130 -6.3572 35 1 0.6243 -9.3104 -5.7539 36 1 2.7771 -5.8086 -1.2764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153879412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:13 Heat of formation + Delta-G solvation = -99.976330 kcal Electronic energy + Delta-G solvation = -25560.223296 eV Core-core repulsion = 21472.945161 eV Total energy + Delta-G solvation = -4087.278135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.92952 -39.44227 -37.94877 -37.15679 -37.04353 -35.87785 -33.60301 -32.62658 -32.30059 -31.18690 -28.96940 -26.34566 -23.51784 -22.60615 -22.54773 -22.18817 -20.58397 -19.57955 -18.21186 -17.79536 -17.54929 -16.97446 -16.66075 -16.11225 -15.61382 -15.49222 -15.35634 -14.96574 -14.70058 -14.17250 -13.94056 -13.45355 -13.18789 -13.10153 -12.90954 -12.41226 -12.28074 -12.18007 -12.10117 -12.03699 -12.02030 -11.86438 -11.71961 -11.42597 -11.17911 -10.81974 -10.67684 -10.60760 -10.48194 -9.61948 -9.26324 -9.19540 -9.03973 -7.96744 -7.42353 -6.50081 -4.98250 0.32987 0.95235 1.40638 2.82971 3.00560 3.06682 3.08148 3.49253 3.65033 3.79807 3.86339 4.19085 4.28868 4.30227 4.46850 4.63924 4.73077 4.76403 4.81533 4.97986 5.36749 5.45053 5.46231 5.46624 5.70740 5.74800 5.87587 5.91212 5.98126 6.01415 6.45640 6.63585 6.73808 6.87350 7.15023 7.49799 7.76097 7.96617 8.69960 8.98565 10.17474 10.39576 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003386 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.604862 B = 8268.116131 C = 8641.383538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.087 3.913 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.541 3.459 10 O -0.563 6.563 11 N -0.697 5.697 12 C 0.169 3.831 13 C -0.048 4.048 14 C -0.149 4.149 15 C 0.147 3.853 16 F -0.135 7.135 17 C -0.690 4.690 18 S 2.705 3.295 19 O -0.953 6.953 20 O -0.954 6.954 21 N -1.086 6.086 22 C 0.084 3.916 23 C -0.188 4.188 24 C -0.186 4.186 25 C -0.058 4.058 26 H 0.274 0.726 27 H 0.398 0.602 28 H 0.162 0.838 29 H 0.140 0.860 30 H 0.418 0.582 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -12.924 -6.292 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.349 3.651 10 O -0.445 6.445 11 N -0.341 5.341 12 C 0.068 3.932 13 C -0.069 4.069 14 C -0.169 4.169 15 C 0.125 3.875 16 F -0.113 7.113 17 C -0.779 4.779 18 S 2.794 3.206 19 O -0.943 6.943 20 O -0.944 6.944 21 N -0.842 5.842 22 C -0.024 4.024 23 C -0.227 4.227 24 C -0.226 4.226 25 C -0.081 4.081 26 H 0.085 0.915 27 H 0.233 0.767 28 H 0.179 0.821 29 H 0.157 0.843 30 H 0.253 0.747 31 H 0.157 0.843 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.298 -12.993 -6.044 14.333 hybrid contribution -0.074 0.822 0.108 0.832 sum 0.224 -12.171 -5.936 13.543 Atomic orbital electron populations 1.69951 1.07222 1.28200 1.33069 1.25751 0.94741 1.00635 0.92390 0.86295 0.79798 0.80257 0.79742 1.19016 1.20323 1.19019 1.20812 0.93957 0.88764 1.53513 0.90756 1.18434 0.87492 0.81984 0.77209 1.90618 1.13662 1.85794 1.54445 1.44201 1.10081 1.03730 1.76049 1.18044 0.93700 0.87159 0.94276 1.21789 0.93848 0.96353 0.94915 1.21134 1.01630 0.92434 1.01743 1.16860 0.89586 0.82010 0.99081 1.91517 1.79710 1.45633 1.94456 1.30369 1.06630 1.18780 1.22093 1.01586 0.73198 0.73326 0.72496 1.93585 1.40007 1.82138 1.78539 1.93615 1.86372 1.48680 1.65700 1.55095 1.66905 1.25617 1.36586 1.21349 1.01782 0.92830 0.86440 1.23406 0.91763 1.03714 1.03840 1.23380 1.01976 1.02048 0.95149 1.20587 1.00386 0.90775 0.96378 0.91482 0.76738 0.82098 0.84263 0.74723 0.84329 0.88250 0.87693 0.87776 0.88353 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.74 11.82 55.55 0.66 -20.08 16 2 C 0.09 2.21 5.50 -17.35 -0.10 2.11 16 3 Si 0.92 18.49 29.56 -169.99 -5.02 13.47 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.53 -13.66 9.53 -35.71 -0.34 -14.00 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.54 13.84 7.58 -13.10 -0.10 13.74 16 10 O -0.56 -16.10 12.46 5.13 0.06 -16.03 16 11 N -0.70 -14.27 5.31 -11.19 -0.06 -14.33 16 12 C 0.17 3.21 6.29 -83.74 -0.53 2.68 16 13 C -0.05 -0.91 8.70 -39.36 -0.34 -1.25 16 14 C -0.15 -2.43 10.02 -39.54 -0.40 -2.83 16 15 C 0.15 2.34 7.22 -39.35 -0.28 2.06 16 16 F -0.13 -2.03 16.30 2.25 0.04 -2.00 16 17 C -0.69 -10.78 5.87 -39.54 -0.23 -11.01 16 18 S 2.70 37.98 5.35 -107.50 -0.57 37.41 16 19 O -0.95 -15.03 16.74 -57.17 -0.96 -15.98 16 20 O -0.95 -15.57 17.47 -57.17 -1.00 -16.57 16 21 N -1.09 -11.83 6.04 -4.89 -0.03 -11.86 16 22 C 0.08 0.87 6.47 -67.93 -0.44 0.43 16 23 C -0.19 -1.66 10.46 -26.73 -0.28 -1.94 16 24 C -0.19 -1.54 10.46 -26.73 -0.28 -1.82 16 25 C -0.06 -0.96 9.47 -39.35 -0.37 -1.33 16 26 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 27 H 0.40 6.91 8.80 -40.82 -0.36 6.55 16 28 H 0.16 3.42 6.23 -52.48 -0.33 3.09 16 29 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.42 3.65 8.96 -34.47 -0.31 3.34 16 31 H 0.14 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.15 2.18 7.33 -52.49 -0.38 1.79 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -33.30 336.12 -8.97 -42.27 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.46 Total: 11.81 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.69 Total: -13.17 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.57 Total: -46.27 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.89 Total: -48.59 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.57 Total: 37.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.30 -8.97 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153879412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.709 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds