Wall clock time and date at job start Tue Mar 31 2020 14:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47113 * 239.99649 * 3 2 1 5 5 H 1.48491 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47096 * 119.99693 * 3 2 1 7 7 C 1.40131 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.46127 * 119.99996 * 0.02562 * 7 2 1 10 10 O 1.21764 * 119.99743 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00402 * 179.97438 * 9 7 2 12 12 C 1.39560 * 120.00358 * 184.94310 * 11 9 7 13 13 C 1.39060 * 120.06046 * 324.43730 * 12 11 9 14 14 C 1.38011 * 119.94062 * 180.24681 * 13 12 11 15 15 C 1.38569 * 120.06304 * 0.02692 * 14 13 12 16 16 F 1.35096 * 119.94456 * 180.02562 * 15 14 13 17 17 C 1.38537 * 120.11639 * 359.97438 * 15 14 13 18 18 S 1.76198 * 119.97270 * 180.02562 * 17 15 14 19 19 O 1.42103 * 106.40205 * 177.79559 * 18 17 15 20 20 O 1.42101 * 106.39981 * 310.71132 * 18 17 15 21 21 N 1.65596 * 107.21969 * 64.25183 * 18 17 15 22 22 C 1.46494 * 119.99941 * 64.22236 * 21 18 17 23 23 C 1.53001 * 117.49997 * 210.85310 * 22 21 18 24 24 C 1.52995 * 60.00152 * 252.50991 * 23 22 21 25 25 C 1.38058 * 120.05748 * 359.97438 * 17 15 14 26 26 H 0.97003 * 120.00416 * 0.02562 * 1 2 3 27 27 H 0.97007 * 119.99528 * 4.94653 * 11 9 7 28 28 H 1.08003 * 120.02642 * 0.25496 * 13 12 11 29 29 H 1.08010 * 119.96842 * 180.02562 * 14 13 12 30 30 H 0.97003 * 120.00161 * 244.22478 * 21 18 17 31 31 H 1.09000 * 115.55239 * 356.56298 * 22 21 18 32 32 H 1.09005 * 117.49795 * 0.02562 * 23 22 21 33 33 H 1.09001 * 117.50033 * 145.02008 * 23 22 21 34 34 H 1.08993 * 117.50191 * 252.50666 * 24 23 22 35 35 H 1.09005 * 117.49906 * 107.48604 * 24 23 22 36 36 H 1.07995 * 120.02823 * 180.02562 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6965 1.2126 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2764 -2.4791 0.0005 10 8 0.0587 -2.4791 0.0005 11 7 1.9502 -3.6462 0.0005 12 6 1.2563 -4.8526 -0.1036 13 6 0.0114 -4.9945 0.4996 14 6 -0.6703 -6.1903 0.3994 15 6 -0.1152 -7.2492 -0.3011 16 9 -0.7848 -8.4185 -0.3981 17 6 1.1249 -7.1106 -0.9030 18 16 1.8269 -8.4593 -1.7933 19 8 3.0582 -7.9909 -2.3262 20 8 1.7293 -9.5947 -0.9444 21 7 0.8400 -8.7581 -3.0891 22 6 0.6788 -7.7459 -4.1357 23 6 -0.6648 -7.6922 -4.8657 24 6 0.5735 -8.2352 -5.5816 25 6 1.8107 -5.9163 -0.8067 26 1 -0.4851 0.8400 -0.0004 27 1 2.9176 -3.6478 0.0730 28 1 -0.4216 -4.1696 1.0460 29 1 -1.6374 -6.3009 0.8674 30 1 0.3686 -9.6033 -3.1550 31 1 1.1946 -6.8018 -3.9603 32 1 -1.4290 -8.4098 -4.5668 33 1 -1.0333 -6.7127 -5.1704 34 1 1.0198 -7.6130 -6.3572 35 1 0.6243 -9.3104 -5.7539 36 1 2.7771 -5.8086 -1.2764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153879412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:12 Heat of formation + Delta-G solvation = -124.930227 kcal Electronic energy + Delta-G solvation = -25561.305378 eV Core-core repulsion = 21472.945161 eV Total energy + Delta-G solvation = -4088.360217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.22077 -40.99394 -38.83191 -38.71660 -38.30792 -37.10592 -35.33854 -34.55057 -33.17543 -32.55870 -30.54913 -28.18791 -24.91208 -24.03353 -23.20502 -23.06340 -22.21811 -20.74694 -19.71728 -19.31227 -18.75174 -18.37375 -17.88899 -17.49368 -17.09624 -16.84891 -16.78775 -16.08518 -15.86572 -15.62949 -15.23786 -15.03955 -14.75279 -14.54317 -13.92968 -13.85901 -13.62031 -13.42924 -13.32828 -13.24757 -13.19700 -13.13282 -13.07650 -12.77064 -12.73353 -12.34673 -12.08566 -12.01973 -11.35379 -11.19151 -10.90994 -10.59328 -10.08626 -9.92324 -9.00089 -8.39631 -6.97234 -0.82656 -0.40861 0.01589 1.41801 1.42483 1.55675 1.75671 2.12762 2.19749 2.40763 2.56980 2.73299 2.89825 2.96389 3.29437 3.50182 3.61928 3.86308 3.94617 4.00013 4.00433 4.09052 4.18705 4.30388 4.56870 4.62446 4.83645 5.01798 5.06637 5.17167 5.22731 5.25102 5.28019 5.45923 5.72671 5.96052 6.08605 6.15689 6.76163 7.23057 8.27248 8.52705 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.003386 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.604862 B = 8268.116131 C = 8641.383538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.530 3.470 10 O -0.603 6.603 11 N -0.690 5.690 12 C 0.143 3.857 13 C -0.066 4.066 14 C -0.144 4.144 15 C 0.152 3.848 16 F -0.125 7.125 17 C -0.691 4.691 18 S 2.728 3.272 19 O -0.967 6.967 20 O -0.974 6.974 21 N -1.072 6.072 22 C 0.054 3.946 23 C -0.185 4.185 24 C -0.171 4.171 25 C -0.046 4.046 26 H 0.279 0.721 27 H 0.412 0.588 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.430 0.570 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -13.736 -7.505 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.183 4.183 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.598 4.598 8 H 0.112 0.888 9 C 0.338 3.662 10 O -0.489 6.489 11 N -0.335 5.335 12 C 0.044 3.956 13 C -0.087 4.087 14 C -0.163 4.163 15 C 0.130 3.870 16 F -0.104 7.104 17 C -0.777 4.777 18 S 2.815 3.185 19 O -0.957 6.957 20 O -0.964 6.964 21 N -0.832 5.832 22 C -0.054 4.054 23 C -0.225 4.225 24 C -0.210 4.210 25 C -0.069 4.069 26 H 0.089 0.911 27 H 0.249 0.751 28 H 0.150 0.850 29 H 0.181 0.819 30 H 0.267 0.733 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.258 -13.856 -7.244 15.686 hybrid contribution -0.415 0.884 0.426 1.065 sum 0.843 -12.972 -6.818 14.679 Atomic orbital electron populations 1.70101 1.09431 1.29552 1.34636 1.26920 0.95516 1.04785 0.91080 0.85053 0.78243 0.74663 0.80349 1.17852 1.19954 1.17853 1.21361 0.95163 0.89392 1.53847 0.88751 1.18706 0.87225 0.83516 0.76774 1.90584 1.15346 1.86881 1.56096 1.43731 1.10628 1.03237 1.75856 1.18215 0.94167 0.87318 0.95914 1.21588 0.94516 0.96710 0.95912 1.21277 1.02307 0.91425 1.01340 1.16883 0.89602 0.82070 0.98413 1.91543 1.79524 1.45007 1.94305 1.30714 1.06334 1.18933 1.21695 1.00890 0.73019 0.72220 0.72351 1.93565 1.41150 1.82250 1.78731 1.93586 1.86762 1.49143 1.66884 1.54760 1.66722 1.26292 1.35459 1.21554 1.03536 0.92840 0.87479 1.23485 0.91626 1.04173 1.03171 1.23497 1.00804 1.03059 0.93641 1.20705 1.00854 0.90058 0.95244 0.91122 0.75130 0.84988 0.81861 0.73260 0.85009 0.87381 0.87606 0.86753 0.87009 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.67 11.82 21.85 0.26 -45.41 16 2 C 0.03 1.75 5.50 85.33 0.47 2.22 16 3 Si 1.00 37.72 29.56 68.60 2.03 39.74 16 4 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.56 -29.11 9.53 24.78 0.24 -28.87 16 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.53 28.03 7.58 86.29 0.65 28.68 16 10 O -0.60 -36.20 12.46 -4.55 -0.06 -36.26 16 11 N -0.69 -28.86 5.31 -307.51 -1.63 -30.50 16 12 C 0.14 5.53 6.29 38.30 0.24 5.77 16 13 C -0.07 -2.59 8.70 22.41 0.19 -2.40 16 14 C -0.14 -4.64 10.02 22.29 0.22 -4.42 16 15 C 0.15 4.66 7.22 22.42 0.16 4.82 16 16 F -0.13 -3.53 16.30 44.97 0.73 -2.80 16 17 C -0.69 -20.73 5.87 22.30 0.13 -20.60 16 18 S 2.73 72.01 5.35 -56.49 -0.30 71.71 16 19 O -0.97 -28.89 16.74 -128.00 -2.14 -31.03 16 20 O -0.97 -30.08 17.47 -128.00 -2.24 -32.31 16 21 N -1.07 -21.09 6.04 -169.39 -1.02 -22.11 16 22 C 0.05 1.01 6.47 44.99 0.29 1.30 16 23 C -0.19 -2.87 10.46 30.59 0.32 -2.55 16 24 C -0.17 -2.37 10.46 30.59 0.32 -2.05 16 25 C -0.05 -1.49 9.47 22.42 0.21 -1.28 16 26 H 0.28 14.30 8.29 -92.71 -0.77 13.53 16 27 H 0.41 14.38 8.80 -92.70 -0.82 13.57 16 28 H 0.13 6.00 6.23 -2.91 -0.02 5.99 16 29 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.43 6.43 8.96 -96.74 -0.87 5.56 16 31 H 0.13 2.65 8.11 -2.39 -0.02 2.63 16 32 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.17 4.69 7.33 -2.91 -0.02 4.67 16 Total: -1.00 -72.87 336.12 -1.43 -74.30 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.51 Total: 34.04 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 3.45 Total: -19.37 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.40 Total: -98.02 kcal Atomic # 8 Polarization: -95.16 SS G_CDS: -4.44 Total: -99.60 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.73 Total: -2.80 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: 72.01 SS G_CDS: -0.30 Total: 71.71 kcal Total: -72.87 -1.43 -74.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153879412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.629 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds