Wall clock time and date at job start Tue Mar 31 2020 15:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48491 * 109.47347 * 270.00392 * 3 2 1 5 5 H 1.48508 * 109.46647 * 30.00092 * 3 2 1 6 6 H 1.48497 * 109.47146 * 149.99506 * 3 2 1 7 7 C 1.38674 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99864 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.76197 * 99.99930 * 180.02562 * 9 7 2 11 11 N 1.31657 * 126.38896 * 0.03689 * 10 9 7 12 12 N 1.28516 * 110.02298 * 179.71611 * 11 10 9 13 13 C 1.31501 * 109.92778 * 0.41743 * 12 11 10 14 14 C 1.47739 * 126.44333 * 179.85589 * 13 12 11 15 15 C 1.39606 * 119.75181 * 359.69131 * 14 13 12 16 16 C 1.38328 * 119.04749 * 179.97438 * 15 14 13 17 17 C 1.38844 * 118.53394 * 0.02562 * 16 15 14 18 18 C 1.38291 * 119.41225 * 0.27762 * 17 16 15 19 19 N 1.31716 * 120.91913 * 359.39803 * 18 17 16 20 20 N 1.36623 * 126.38022 * 179.97438 * 10 9 7 21 21 C 1.46494 * 127.14592 * 0.05866 * 20 10 9 22 22 C 1.50704 * 109.46620 * 269.97058 * 21 20 10 23 23 C 1.34510 * 125.78661 * 89.72146 * 22 21 20 24 24 C 1.41386 * 106.83768 * 179.88645 * 23 22 21 25 25 C 1.34513 * 106.84259 * 0.37100 * 24 23 22 26 26 O 1.34301 * 108.42121 * 359.76962 * 25 24 23 27 27 H 0.96994 * 119.99499 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.47822 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.73035 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.28987 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.53700 * 179.70457 * 18 17 16 32 32 H 1.08996 * 109.47514 * 29.97237 * 21 20 10 33 33 H 1.09007 * 109.46949 * 149.97553 * 21 20 10 34 34 H 1.08000 * 126.58604 * 0.02562 * 23 22 21 35 35 H 1.08005 * 126.58191 * 180.12636 * 24 23 22 36 36 H 1.07997 * 125.79255 * 179.75399 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0096 -1.2010 -0.0005 8 1 3.0897 -1.2010 -0.0010 9 16 1.1286 -2.7270 -0.0019 10 6 2.4783 -3.8595 -0.0014 11 7 3.7579 -3.5497 0.0004 12 7 4.4698 -4.6197 0.0063 13 6 3.6888 -5.6776 -0.0005 14 6 4.1237 -7.0895 0.0000 15 6 5.4860 -7.3948 0.0017 16 6 5.8769 -8.7217 0.0026 17 6 4.8943 -9.7026 0.0013 18 6 3.5626 -9.3299 -0.0068 19 7 3.2154 -8.0593 -0.0013 20 7 2.3921 -5.2230 -0.0015 21 6 1.1709 -6.0321 -0.0034 22 6 0.7505 -6.3102 1.4168 23 6 -0.0674 -5.5430 2.1596 24 6 -0.1907 -6.1750 3.4183 25 6 0.5657 -7.2863 3.3722 26 8 1.1335 -7.3631 2.1575 27 1 -0.4849 0.8400 -0.0004 28 1 6.2240 -6.6064 0.0022 29 1 6.9233 -8.9887 0.0043 30 1 5.1676 -10.7475 0.0015 31 1 2.7966 -10.0912 -0.0126 32 1 0.3771 -5.4908 -0.5180 33 1 1.3603 -6.9746 -0.5174 34 1 -0.5411 -4.6222 1.8526 35 1 -0.7765 -5.8295 4.2574 36 1 0.6949 -7.9962 4.1757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157306034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:28 Heat of formation + Delta-G solvation = 132.235129 kcal Electronic energy + Delta-G solvation = -24609.924361 eV Core-core repulsion = 20995.777646 eV Total energy + Delta-G solvation = -3614.146714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.45417 -41.92444 -39.90442 -34.98901 -32.82059 -32.70043 -32.52123 -32.22376 -30.13880 -29.06219 -26.21476 -25.73986 -24.01151 -23.67114 -21.80167 -21.52074 -20.90225 -20.26641 -18.21047 -17.53870 -17.14887 -16.53141 -16.04638 -15.84752 -15.54172 -15.39273 -14.96670 -14.80401 -14.28279 -13.98387 -13.77867 -13.29237 -13.05791 -13.00527 -12.62815 -12.53238 -12.03929 -11.74420 -11.50121 -11.17098 -11.10494 -10.79149 -10.25365 -10.22549 -9.96596 -9.89031 -9.84434 -9.70407 -9.49622 -9.29243 -8.92813 -8.50789 -8.40031 -6.80191 -6.50691 -4.24658 0.72335 1.21025 1.71980 2.36530 2.43279 2.78052 3.14864 3.18416 3.22656 3.31188 3.38360 3.41615 3.96544 3.98774 3.99854 4.64296 4.73572 4.76454 4.86426 4.94020 4.96395 5.03496 5.08853 5.22257 5.33109 5.34028 5.55870 5.69533 5.79699 5.97099 6.05857 6.10464 6.14310 6.22285 6.33636 6.56559 6.61087 6.69125 7.24112 7.32070 7.54117 7.84878 8.34187 9.01684 9.31305 10.57482 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004244 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.504930 B = 6595.622193 C = 8122.628314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.106 0.894 9 S 0.149 5.851 10 C 0.180 3.820 11 N -0.301 5.301 12 N -0.257 5.257 13 C 0.173 3.827 14 C 0.223 3.777 15 C -0.136 4.136 16 C -0.072 4.072 17 C -0.180 4.180 18 C 0.109 3.891 19 N -0.477 5.477 20 N -0.460 5.460 21 C 0.196 3.804 22 C -0.032 4.032 23 C -0.177 4.177 24 C -0.215 4.215 25 C -0.044 4.044 26 O -0.159 6.159 27 H 0.275 0.725 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -19.232 2.271 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.684 4.684 8 H 0.124 0.876 9 S 0.383 5.617 10 C -0.190 4.190 11 N -0.148 5.148 12 N -0.101 5.101 13 C -0.093 4.093 14 C 0.085 3.915 15 C -0.158 4.158 16 C -0.098 4.098 17 C -0.201 4.201 18 C -0.050 4.050 19 N -0.188 5.188 20 N -0.156 5.156 21 C 0.073 3.927 22 C -0.084 4.084 23 C -0.198 4.198 24 C -0.234 4.234 25 C -0.113 4.113 26 O -0.054 6.054 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.219 -18.360 2.150 18.525 hybrid contribution 1.321 0.281 0.352 1.395 sum 2.540 -18.079 2.502 18.427 Atomic orbital electron populations 1.69935 1.06059 1.28547 1.46623 1.25064 0.95188 0.99629 0.93344 0.85920 0.79653 0.79927 0.78761 1.19871 1.20654 1.18961 1.23244 0.97290 0.89057 1.58774 0.87593 1.83361 0.97479 0.95444 1.85446 1.28512 1.02338 0.85625 1.02498 1.74859 0.98960 1.17996 1.22969 1.74213 1.26656 0.94218 1.15035 1.22090 0.81330 0.93607 1.12289 1.18154 0.89597 0.87814 0.95960 1.22018 0.95998 0.97704 1.00124 1.21515 1.00250 0.92233 0.95818 1.22164 0.94288 1.00622 1.02983 1.22618 0.95101 0.92221 0.95053 1.67561 1.37724 1.00806 1.12721 1.46264 1.06483 1.05431 1.57431 1.20142 0.85361 0.97521 0.89713 1.22292 1.01429 0.89393 0.95237 1.21907 1.02312 1.01576 0.93968 1.21848 1.04944 0.97224 0.99372 1.24014 0.98928 1.01210 0.87113 1.84071 1.57518 1.41631 1.22206 0.91557 0.83590 0.84493 0.84828 0.82574 0.86223 0.85597 0.82526 0.83499 0.78504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.03 13.22 55.48 0.73 -23.30 16 2 C 0.08 2.07 5.49 -17.48 -0.10 1.98 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.82 9.37 30.89 0.29 -14.53 16 8 H 0.11 3.04 6.92 -52.48 -0.36 2.68 16 9 S 0.15 3.65 21.38 -107.50 -2.30 1.35 16 10 C 0.18 4.22 8.06 -87.94 -0.71 3.52 16 11 N -0.30 -7.61 11.03 30.76 0.34 -7.27 16 12 N -0.26 -5.86 11.87 32.57 0.39 -5.47 16 13 C 0.17 3.47 7.82 -153.77 -1.20 2.27 16 14 C 0.22 3.62 6.75 -83.02 -0.56 3.06 16 15 C -0.14 -1.84 9.74 -39.04 -0.38 -2.22 16 16 C -0.07 -0.72 10.16 -39.32 -0.40 -1.12 16 17 C -0.18 -1.61 10.11 -39.34 -0.40 -2.01 16 18 C 0.11 1.15 11.17 -17.58 -0.20 0.96 16 19 N -0.48 -6.82 7.82 -9.85 -0.08 -6.89 16 20 N -0.46 -9.21 2.81 -115.32 -0.32 -9.54 16 21 C 0.20 3.18 6.02 -5.20 -0.03 3.15 16 22 C -0.03 -0.52 6.90 -35.62 -0.25 -0.77 16 23 C -0.18 -2.87 10.81 -39.70 -0.43 -3.30 16 24 C -0.21 -2.98 10.91 -39.70 -0.43 -3.42 16 25 C -0.04 -0.56 12.09 29.42 0.36 -0.21 16 26 O -0.16 -2.45 10.65 5.70 0.06 -2.39 16 27 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.15 1.97 7.86 -52.49 -0.41 1.56 16 29 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 1.79 7.85 -51.93 -0.41 1.38 16 33 H 0.13 1.86 6.27 -51.92 -0.33 1.53 16 34 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 35 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -33.12 340.61 -8.69 -41.81 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.18 Total: 3.12 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -4.44 Total: -12.65 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 1.06 Total: -52.46 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.06 Total: -2.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.30 Total: 1.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.12 -8.69 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157306034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.042 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds