Wall clock time and date at job start Tue Mar 31 2020 15:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48491 * 109.47347 * 270.00392 * 3 2 1 5 5 H 1.48508 * 109.46647 * 30.00092 * 3 2 1 6 6 H 1.48497 * 109.47146 * 149.99506 * 3 2 1 7 7 C 1.38674 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99864 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.76197 * 99.99930 * 180.02562 * 9 7 2 11 11 N 1.31657 * 126.38896 * 0.03689 * 10 9 7 12 12 N 1.28516 * 110.02298 * 179.71611 * 11 10 9 13 13 C 1.31501 * 109.92778 * 0.41743 * 12 11 10 14 14 C 1.47739 * 126.44333 * 179.85589 * 13 12 11 15 15 C 1.39606 * 119.75181 * 359.69131 * 14 13 12 16 16 C 1.38328 * 119.04749 * 179.97438 * 15 14 13 17 17 C 1.38844 * 118.53394 * 0.02562 * 16 15 14 18 18 C 1.38291 * 119.41225 * 0.27762 * 17 16 15 19 19 N 1.31716 * 120.91913 * 359.39803 * 18 17 16 20 20 N 1.36623 * 126.38022 * 179.97438 * 10 9 7 21 21 C 1.46494 * 127.14592 * 0.05866 * 20 10 9 22 22 C 1.50704 * 109.46620 * 269.97058 * 21 20 10 23 23 C 1.34510 * 125.78661 * 89.72146 * 22 21 20 24 24 C 1.41386 * 106.83768 * 179.88645 * 23 22 21 25 25 C 1.34513 * 106.84259 * 0.37100 * 24 23 22 26 26 O 1.34301 * 108.42121 * 359.76962 * 25 24 23 27 27 H 0.96994 * 119.99499 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.47822 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.73035 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.28987 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.53700 * 179.70457 * 18 17 16 32 32 H 1.08996 * 109.47514 * 29.97237 * 21 20 10 33 33 H 1.09007 * 109.46949 * 149.97553 * 21 20 10 34 34 H 1.08000 * 126.58604 * 0.02562 * 23 22 21 35 35 H 1.08005 * 126.58191 * 180.12636 * 24 23 22 36 36 H 1.07997 * 125.79255 * 179.75399 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0096 -1.2010 -0.0005 8 1 3.0897 -1.2010 -0.0010 9 16 1.1286 -2.7270 -0.0019 10 6 2.4783 -3.8595 -0.0014 11 7 3.7579 -3.5497 0.0004 12 7 4.4698 -4.6197 0.0063 13 6 3.6888 -5.6776 -0.0005 14 6 4.1237 -7.0895 0.0000 15 6 5.4860 -7.3948 0.0017 16 6 5.8769 -8.7217 0.0026 17 6 4.8943 -9.7026 0.0013 18 6 3.5626 -9.3299 -0.0068 19 7 3.2154 -8.0593 -0.0013 20 7 2.3921 -5.2230 -0.0015 21 6 1.1709 -6.0321 -0.0034 22 6 0.7505 -6.3102 1.4168 23 6 -0.0674 -5.5430 2.1596 24 6 -0.1907 -6.1750 3.4183 25 6 0.5657 -7.2863 3.3722 26 8 1.1335 -7.3631 2.1575 27 1 -0.4849 0.8400 -0.0004 28 1 6.2240 -6.6064 0.0022 29 1 6.9233 -8.9887 0.0043 30 1 5.1676 -10.7475 0.0015 31 1 2.7966 -10.0912 -0.0126 32 1 0.3771 -5.4908 -0.5180 33 1 1.3603 -6.9746 -0.5174 34 1 -0.5411 -4.6222 1.8526 35 1 -0.7765 -5.8295 4.2574 36 1 0.6949 -7.9962 4.1757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157306034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:28 Heat of formation + Delta-G solvation = 113.070545 kcal Electronic energy + Delta-G solvation = -24610.755399 eV Core-core repulsion = 20995.777646 eV Total energy + Delta-G solvation = -3614.977753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.83255 -43.34600 -40.87964 -36.48580 -34.75194 -33.95857 -33.59020 -33.31265 -31.45795 -30.48314 -27.82302 -27.48043 -25.21289 -24.71578 -23.25850 -22.76679 -22.20572 -21.50672 -20.00507 -18.93663 -18.35294 -17.70230 -17.30610 -17.09645 -16.97373 -16.84409 -16.56329 -16.26442 -15.48289 -15.12664 -14.91619 -14.79391 -14.39581 -13.99859 -13.77532 -13.67473 -13.47735 -13.12388 -13.03840 -13.00325 -12.70066 -12.58233 -12.05546 -11.73452 -11.68909 -11.41573 -11.09310 -10.90414 -10.86722 -10.83607 -10.48415 -9.86028 -9.56035 -8.68597 -8.53672 -6.32017 -0.37252 0.34047 0.42572 0.77552 0.91888 1.36471 1.39394 1.51544 1.55594 1.78716 1.89988 2.04513 2.13562 2.78915 2.87478 2.91964 2.99303 3.50302 3.64381 3.77446 3.97875 4.08199 4.11212 4.15123 4.21138 4.24600 4.35572 4.54421 4.71568 4.84545 4.86124 4.91957 5.02044 5.11210 5.18611 5.25261 5.45608 5.53891 5.67127 5.78061 6.16453 6.20506 6.88144 6.94328 7.60754 8.55620 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004244 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.504930 B = 6595.622193 C = 8122.628314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.037 3.963 3 Si 0.993 3.007 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.564 4.564 8 H 0.085 0.915 9 S 0.139 5.861 10 C 0.164 3.836 11 N -0.341 5.341 12 N -0.298 5.298 13 C 0.200 3.800 14 C 0.175 3.825 15 C -0.141 4.141 16 C -0.067 4.067 17 C -0.148 4.148 18 C 0.100 3.900 19 N -0.491 5.491 20 N -0.454 5.454 21 C 0.193 3.807 22 C -0.049 4.049 23 C -0.194 4.194 24 C -0.231 4.231 25 C -0.026 4.026 26 O -0.166 6.166 27 H 0.281 0.719 28 H 0.135 0.865 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -23.022 3.076 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.170 4.170 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.713 4.713 8 H 0.103 0.897 9 S 0.371 5.629 10 C -0.208 4.208 11 N -0.187 5.187 12 N -0.140 5.140 13 C -0.068 4.068 14 C 0.039 3.961 15 C -0.164 4.164 16 C -0.093 4.093 17 C -0.168 4.168 18 C -0.059 4.059 19 N -0.202 5.202 20 N -0.149 5.149 21 C 0.072 3.928 22 C -0.100 4.100 23 C -0.214 4.214 24 C -0.250 4.250 25 C -0.094 4.094 26 O -0.062 6.062 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.192 0.808 30 H 0.199 0.801 31 H 0.208 0.792 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.025 -22.176 2.951 22.462 hybrid contribution 1.169 0.998 0.150 1.544 sum 3.194 -21.178 3.101 21.641 Atomic orbital electron populations 1.69986 1.07074 1.29683 1.46899 1.25876 0.96055 1.02483 0.92612 0.85028 0.78138 0.76220 0.79149 1.18931 1.18867 1.19704 1.23354 0.96759 0.91176 1.59994 0.89698 1.82988 0.97911 0.94571 1.87452 1.28227 1.01560 0.86971 1.04040 1.74721 1.00051 1.19907 1.23980 1.74116 1.27125 0.94497 1.18259 1.22981 0.80841 0.95228 1.07752 1.18031 0.91014 0.86258 1.00812 1.22105 0.94614 0.99553 1.00126 1.21959 1.02575 0.90483 0.94237 1.22722 0.93035 1.02648 0.98376 1.23326 0.97212 0.91254 0.94062 1.67451 1.37849 1.01992 1.12883 1.46534 1.07777 1.04475 1.56088 1.20371 0.84140 0.97632 0.90667 1.22097 1.02318 0.90282 0.95309 1.22032 1.02549 1.01331 0.95497 1.22148 1.06072 0.97727 0.99081 1.24913 0.96675 1.01158 0.86702 1.84061 1.57805 1.41194 1.23102 0.90912 0.84722 0.80814 0.80147 0.79217 0.85788 0.83919 0.83961 0.81409 0.73933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.68 13.22 21.62 0.29 -50.39 16 2 C 0.04 2.03 5.49 84.83 0.47 2.49 16 3 Si 0.99 44.35 29.55 68.60 2.03 46.37 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.56 -33.00 9.37 67.92 0.64 -32.36 16 8 H 0.08 5.21 6.92 -2.91 -0.02 5.19 16 9 S 0.14 7.22 21.38 -56.49 -1.21 6.02 16 10 C 0.16 8.21 8.06 179.41 1.45 9.66 16 11 N -0.34 -18.40 11.03 -56.60 -0.62 -19.02 16 12 N -0.30 -14.34 11.87 -50.86 -0.60 -14.95 16 13 C 0.20 8.32 7.82 136.17 1.06 9.38 16 14 C 0.18 5.59 6.75 41.83 0.28 5.87 16 15 C -0.14 -3.64 9.74 22.62 0.22 -3.42 16 16 C -0.07 -1.05 10.16 22.44 0.23 -0.82 16 17 C -0.15 -1.79 10.11 22.43 0.23 -1.56 16 18 C 0.10 1.69 11.17 84.72 0.95 2.64 16 19 N -0.49 -12.99 7.82 -185.06 -1.45 -14.44 16 20 N -0.45 -18.99 2.81 -518.77 -1.46 -20.45 16 21 C 0.19 6.45 6.02 85.64 0.52 6.97 16 22 C -0.05 -1.61 6.90 24.83 0.17 -1.44 16 23 C -0.19 -6.40 10.81 22.19 0.24 -6.16 16 24 C -0.23 -6.15 10.91 22.19 0.24 -5.91 16 25 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 26 O -0.17 -4.85 10.65 -2.53 -0.03 -4.88 16 27 H 0.28 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.13 3.68 7.86 -2.91 -0.02 3.66 16 29 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 31 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.12 3.93 7.85 -2.39 -0.02 3.91 16 33 H 0.14 4.20 6.27 -2.38 -0.01 4.18 16 34 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.24 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -78.06 340.61 5.57 -72.48 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.13 Total: 13.71 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 7.49 Total: -14.46 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -3.85 Total: -119.25 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.03 Total: -4.88 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 7.22 SS G_CDS: -1.21 Total: 6.02 kcal Total: -78.06 5.57 -72.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157306034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.555 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds