Wall clock time and date at job start Tue Mar 31 2020 14:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 H 1.09000 * 109.52173 * 300.15099 * 8 6 5 10 10 C 1.53181 * 109.52337 * 179.97438 * 8 6 5 11 11 C 1.53172 * 109.03688 * 183.11078 * 10 8 6 12 12 C 1.53089 * 109.16293 * 56.98385 * 11 10 8 13 13 O 1.42900 * 109.41212 * 302.38839 * 12 11 10 14 14 C 1.42906 * 114.10176 * 61.15831 * 13 12 11 15 15 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 16 16 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 17 17 S 1.76206 * 125.92766 * 359.97438 * 16 2 1 18 18 C 1.76202 * 99.99911 * 180.02562 * 17 16 2 19 19 H 1.08001 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.38428 * 119.99680 * 179.97438 * 18 17 16 21 21 N 1.31816 * 119.99645 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00281 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46725 * 89.99832 * 22 20 18 24 24 H 1.48495 * 109.46974 * 209.99813 * 22 20 18 25 25 H 1.48500 * 109.47010 * 329.99893 * 22 20 18 26 26 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 27 27 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 28 28 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 29 29 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 30 30 H 1.08997 * 109.54280 * 302.98094 * 10 8 6 31 31 H 1.09000 * 109.54322 * 63.24352 * 10 8 6 32 32 H 1.08991 * 109.52591 * 297.07196 * 11 10 8 33 33 H 1.09011 * 109.57213 * 176.91682 * 11 10 8 34 34 H 1.08994 * 109.48233 * 182.40718 * 12 11 10 35 35 H 1.08999 * 109.48245 * 62.36999 * 12 11 10 36 36 H 1.08995 * 109.48300 * 178.85409 * 14 13 12 37 37 H 1.09008 * 109.48368 * 58.82767 * 14 13 12 38 38 H 0.96997 * 119.99545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 1 6.5511 3.5645 -0.8947 10 6 8.1383 2.4096 -0.0004 11 6 9.1214 3.5819 0.0725 12 6 8.8162 4.4171 1.3187 13 8 7.4615 4.8690 1.2674 14 6 6.4955 3.8162 1.2456 15 16 3.9346 -0.7098 -0.0066 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0668 -3.7041 0.0027 19 1 4.0189 -3.1943 0.0019 20 6 3.0223 -5.0877 0.0044 21 7 4.1422 -5.7830 0.0046 22 14 1.3755 -5.9693 0.0051 23 1 0.9395 -6.2046 -1.3948 24 1 1.5112 -7.2710 0.7068 25 1 0.3667 -5.1331 0.7039 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3632 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0799 2.9688 0.0015 30 1 8.2789 1.7615 0.8646 31 1 8.3138 1.8428 -0.9147 32 1 9.0148 4.2026 -0.8171 33 1 10.1410 3.2004 0.1304 34 1 9.4852 5.2769 1.3529 35 1 8.9623 3.8069 2.2100 36 1 5.4928 4.2431 1.2272 37 1 6.6111 3.1981 2.1360 38 1 4.1110 -6.7525 0.0061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170793663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:10 Heat of formation + Delta-G solvation = -53.450075 kcal Electronic energy + Delta-G solvation = -22793.739588 eV Core-core repulsion = 19274.692159 eV Total energy + Delta-G solvation = -3519.047429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77243 -39.15635 -38.49892 -34.92067 -33.95452 -32.77270 -31.93424 -30.44167 -27.20160 -25.92193 -25.63773 -25.07970 -23.31204 -21.40059 -20.63182 -19.66828 -18.22205 -17.71457 -16.93656 -16.68582 -16.32716 -15.80474 -15.53722 -15.31485 -15.02618 -14.75250 -14.17270 -14.01570 -13.87428 -13.34752 -13.23058 -12.92285 -12.79312 -12.25127 -12.05170 -11.93429 -11.59419 -11.47310 -11.38062 -11.34106 -11.27310 -10.88763 -10.72935 -10.65531 -10.15670 -10.05273 -9.80908 -9.48676 -9.19071 -8.88196 -8.79827 -7.91910 -6.75268 -6.57390 -4.30763 1.27036 1.76583 2.34663 2.42605 2.72393 2.85128 3.09084 3.18553 3.35068 3.46023 3.50033 4.01440 4.19303 4.41081 4.41514 4.46722 4.56834 4.72583 4.82602 4.87256 5.00349 5.09264 5.20740 5.30180 5.39949 5.49058 5.60679 5.79233 5.84149 5.96053 6.03729 6.10824 6.31713 6.37539 6.72864 6.84342 7.06912 7.65537 7.87989 8.21899 8.39743 8.82309 10.50496 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.003185 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.612431 B = 8788.352131 C =10017.301712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.480 5.480 4 C 0.190 3.810 5 N -0.616 5.616 6 C 0.510 3.490 7 O -0.496 6.496 8 C -0.133 4.133 9 H 0.112 0.888 10 C -0.106 4.106 11 C -0.155 4.155 12 C 0.055 3.945 13 O -0.375 6.375 14 C 0.069 3.931 15 S 0.231 5.769 16 C -0.238 4.238 17 S 0.055 5.945 18 C -0.545 4.545 19 H 0.105 0.895 20 C 0.102 3.898 21 N -0.857 5.857 22 Si 0.852 3.148 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.236 1.236 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.415 0.585 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 18.442 1.002 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.202 5.202 4 C -0.180 4.180 5 N -0.265 5.265 6 C 0.295 3.705 7 O -0.369 6.369 8 C -0.155 4.155 9 H 0.130 0.870 10 C -0.144 4.144 11 C -0.193 4.193 12 C -0.022 4.022 13 O -0.294 6.294 14 C -0.008 4.008 15 S 0.476 5.524 16 C -0.475 4.475 17 S 0.303 5.697 18 C -0.694 4.694 19 H 0.122 0.878 20 C -0.110 4.110 21 N -0.490 5.490 22 Si 0.676 3.324 23 H -0.185 1.185 24 H -0.190 1.190 25 H -0.160 1.160 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.252 0.748 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.793 17.026 0.994 17.716 hybrid contribution -0.191 0.067 -0.117 0.234 sum 4.602 17.094 0.877 17.724 Atomic orbital electron populations 1.20151 0.87970 1.02233 1.01932 1.19113 0.96800 0.84587 1.10609 1.65864 1.02878 1.32189 1.19223 1.23992 0.90038 0.93458 1.10490 1.42507 1.04477 1.08094 1.71421 1.20723 0.81709 0.91324 0.76733 1.90738 1.76915 1.22361 1.46898 1.21958 0.95517 0.95489 1.02500 0.86961 1.21462 0.90811 0.97420 1.04676 1.22221 1.00081 0.97502 0.99493 1.22681 0.83240 0.99201 0.97030 1.87968 1.15211 1.31495 1.94682 1.22550 0.93393 0.89531 0.95333 1.86175 1.00642 0.94378 1.71171 1.28173 1.01680 1.04510 1.13101 1.82467 1.13455 0.89143 1.84671 1.22663 0.92390 0.94499 1.59803 0.87778 1.24745 0.97397 0.96230 0.92599 1.70012 1.26468 1.07688 1.44861 0.86810 0.83844 0.81373 0.80386 1.18540 1.18969 1.15987 0.91690 0.91080 0.91689 0.74767 0.90422 0.90148 0.90801 0.90152 0.88559 0.92774 0.88140 0.92033 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.01 0.36 -0.68 16 2 C 0.03 0.62 6.73 -83.96 -0.57 0.06 16 3 N -0.48 -9.25 10.55 -9.78 -0.10 -9.36 16 4 C 0.19 3.54 8.40 -87.20 -0.73 2.81 16 5 N -0.62 -8.51 5.31 -11.78 -0.06 -8.57 16 6 C 0.51 6.93 7.12 -10.99 -0.08 6.85 16 7 O -0.50 -8.85 13.49 5.55 0.07 -8.78 16 8 C -0.13 -1.24 2.73 -91.63 -0.25 -1.49 16 9 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.11 -0.99 4.62 -26.55 -0.12 -1.12 16 11 C -0.16 -1.08 6.14 -26.60 -0.16 -1.25 16 12 C 0.06 0.39 6.84 37.20 0.25 0.65 16 13 O -0.38 -3.40 10.77 -35.23 -0.38 -3.78 16 14 C 0.07 0.59 6.01 37.20 0.22 0.81 16 15 S 0.23 5.08 18.35 -107.50 -1.97 3.10 16 16 C -0.24 -5.36 6.67 29.46 0.20 -5.16 16 17 S 0.06 1.31 18.70 -107.50 -2.01 -0.70 16 18 C -0.55 -15.12 9.80 30.80 0.30 -14.82 16 19 H 0.10 3.10 6.21 -52.49 -0.33 2.77 16 20 C 0.10 2.80 5.49 -17.49 -0.10 2.71 16 21 N -0.86 -24.66 13.98 55.47 0.78 -23.88 16 22 Si 0.85 19.60 27.73 -169.99 -4.71 14.88 16 23 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.24 -5.18 6.73 56.52 0.38 -4.80 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.15 7.37 -51.93 -0.38 0.77 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.41 4.25 8.30 -40.82 -0.34 3.91 16 30 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.69 7.65 -51.93 -0.40 0.29 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.28 7.31 8.32 -40.82 -0.34 6.97 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -32.29 339.55 -8.77 -41.06 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.82 Total: 1.54 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.67 Total: -10.64 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.61 Total: -41.81 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.30 Total: -12.55 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -3.98 Total: 2.40 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.29 -8.77 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170793663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.394 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds