Wall clock time and date at job start Tue Mar 31 2020 14:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 H 1.09000 * 109.52173 * 300.15099 * 8 6 5 10 10 C 1.53181 * 109.52337 * 179.97438 * 8 6 5 11 11 C 1.53172 * 109.03688 * 183.11078 * 10 8 6 12 12 C 1.53089 * 109.16293 * 56.98385 * 11 10 8 13 13 O 1.42900 * 109.41212 * 302.38839 * 12 11 10 14 14 C 1.42906 * 114.10176 * 61.15831 * 13 12 11 15 15 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 16 16 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 17 17 S 1.76206 * 125.92766 * 359.97438 * 16 2 1 18 18 C 1.76202 * 99.99911 * 180.02562 * 17 16 2 19 19 H 1.08001 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.38428 * 119.99680 * 179.97438 * 18 17 16 21 21 N 1.31816 * 119.99645 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00281 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46725 * 89.99832 * 22 20 18 24 24 H 1.48495 * 109.46974 * 209.99813 * 22 20 18 25 25 H 1.48500 * 109.47010 * 329.99893 * 22 20 18 26 26 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 27 27 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 28 28 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 29 29 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 30 30 H 1.08997 * 109.54280 * 302.98094 * 10 8 6 31 31 H 1.09000 * 109.54322 * 63.24352 * 10 8 6 32 32 H 1.08991 * 109.52591 * 297.07196 * 11 10 8 33 33 H 1.09011 * 109.57213 * 176.91682 * 11 10 8 34 34 H 1.08994 * 109.48233 * 182.40718 * 12 11 10 35 35 H 1.08999 * 109.48245 * 62.36999 * 12 11 10 36 36 H 1.08995 * 109.48300 * 178.85409 * 14 13 12 37 37 H 1.09008 * 109.48368 * 58.82767 * 14 13 12 38 38 H 0.96997 * 119.99545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 1 6.5511 3.5645 -0.8947 10 6 8.1383 2.4096 -0.0004 11 6 9.1214 3.5819 0.0725 12 6 8.8162 4.4171 1.3187 13 8 7.4615 4.8690 1.2674 14 6 6.4955 3.8162 1.2456 15 16 3.9346 -0.7098 -0.0066 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0668 -3.7041 0.0027 19 1 4.0189 -3.1943 0.0019 20 6 3.0223 -5.0877 0.0044 21 7 4.1422 -5.7830 0.0046 22 14 1.3755 -5.9693 0.0051 23 1 0.9395 -6.2046 -1.3948 24 1 1.5112 -7.2710 0.7068 25 1 0.3667 -5.1331 0.7039 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3632 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0799 2.9688 0.0015 30 1 8.2789 1.7615 0.8646 31 1 8.3138 1.8428 -0.9147 32 1 9.0148 4.2026 -0.8171 33 1 10.1410 3.2004 0.1304 34 1 9.4852 5.2769 1.3529 35 1 8.9623 3.8069 2.2100 36 1 5.4928 4.2431 1.2272 37 1 6.6111 3.1981 2.1360 38 1 4.1110 -6.7525 0.0061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170793663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:10 Heat of formation + Delta-G solvation = -75.740180 kcal Electronic energy + Delta-G solvation = -22794.706160 eV Core-core repulsion = 19274.692159 eV Total energy + Delta-G solvation = -3520.014000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89413 -40.42228 -39.65002 -36.28113 -34.83318 -34.73801 -32.80661 -31.73494 -28.81650 -27.91932 -26.57995 -25.87339 -24.47402 -22.63328 -21.74892 -20.93680 -19.83568 -19.23014 -18.25747 -17.52484 -17.50382 -17.27232 -17.01620 -16.55557 -16.16946 -15.86466 -15.62394 -15.15446 -15.01059 -14.74851 -14.49218 -14.19541 -13.62972 -13.51853 -13.49360 -13.40126 -13.18882 -13.09696 -12.72967 -12.36261 -12.21093 -12.14789 -11.94630 -11.93114 -11.52495 -11.34253 -11.28404 -10.90391 -10.62973 -10.58729 -10.54488 -9.64015 -8.62740 -8.55052 -6.35934 -0.31904 0.13049 0.74292 1.04259 1.10092 1.28347 1.38588 1.47145 1.63278 1.94637 2.13180 2.49641 2.76151 2.78512 3.32429 3.55184 3.64532 3.73399 3.93490 4.08370 4.17777 4.35829 4.39832 4.56760 4.62631 4.67710 4.75456 4.84436 4.87925 4.92355 5.00252 5.03652 5.08975 5.28805 5.42796 5.59619 5.86173 6.06454 6.11068 6.68966 6.75569 6.79478 8.49895 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.003185 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.612431 B = 8788.352131 C =10017.301712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.483 5.483 4 C 0.232 3.768 5 N -0.602 5.602 6 C 0.512 3.488 7 O -0.536 6.536 8 C -0.119 4.119 9 H 0.140 0.860 10 C -0.110 4.110 11 C -0.147 4.147 12 C 0.049 3.951 13 O -0.383 6.383 14 C 0.071 3.929 15 S 0.162 5.838 16 C -0.276 4.276 17 S 0.061 5.939 18 C -0.567 4.567 19 H 0.067 0.933 20 C 0.048 3.952 21 N -0.907 5.907 22 Si 0.914 3.086 23 H -0.252 1.252 24 H -0.254 1.254 25 H -0.219 1.219 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.437 0.563 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 21.556 0.941 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 N -0.205 5.205 4 C -0.141 4.141 5 N -0.254 5.254 6 C 0.300 3.700 7 O -0.411 6.411 8 C -0.141 4.141 9 H 0.158 0.842 10 C -0.148 4.148 11 C -0.184 4.184 12 C -0.027 4.027 13 O -0.301 6.301 14 C -0.006 4.006 15 S 0.408 5.592 16 C -0.511 4.511 17 S 0.306 5.694 18 C -0.716 4.716 19 H 0.085 0.915 20 C -0.158 4.158 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.177 1.177 24 H -0.178 1.178 25 H -0.142 1.142 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.279 0.721 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.414 20.220 0.937 20.527 hybrid contribution 0.438 -0.533 -0.101 0.697 sum 3.852 19.687 0.836 20.078 Atomic orbital electron populations 1.20327 0.85059 1.03569 1.03508 1.19850 0.98686 0.83908 1.06435 1.66093 1.02516 1.31214 1.20705 1.24266 0.90388 0.93177 1.06245 1.42670 1.04001 1.08015 1.70691 1.21672 0.81767 0.91886 0.74697 1.90750 1.77411 1.24651 1.48294 1.22021 0.93775 0.93851 1.04428 0.84240 1.21491 0.91733 0.98278 1.03303 1.22185 0.99869 0.96397 0.99965 1.22864 0.82800 1.00099 0.96933 1.87971 1.15941 1.31585 1.94608 1.22592 0.94532 0.89375 0.94135 1.86546 1.02202 0.97849 1.72604 1.28110 1.01493 1.04541 1.16926 1.81897 1.10768 0.89414 1.87281 1.22845 0.93256 0.95451 1.60012 0.91474 1.25729 1.01371 0.96859 0.91883 1.70120 1.29079 1.08265 1.46835 0.85893 0.79240 0.80495 0.81049 1.17654 1.17795 1.14208 0.89832 0.90830 0.89243 0.72064 0.92225 0.91338 0.89811 0.88960 0.86509 0.92849 0.86063 0.92846 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.02 71.24 0.71 -1.24 16 2 C 0.05 2.03 6.73 41.77 0.28 2.31 16 3 N -0.48 -17.56 10.55 -184.87 -1.95 -19.51 16 4 C 0.23 8.33 8.40 179.15 1.50 9.84 16 5 N -0.60 -15.37 5.31 -309.57 -1.64 -17.01 16 6 C 0.51 13.37 7.12 87.66 0.62 13.99 16 7 O -0.54 -19.55 13.49 -3.07 -0.04 -19.59 16 8 C -0.12 -1.98 2.73 -11.45 -0.03 -2.01 16 9 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 10 C -0.11 -1.96 4.62 30.71 0.14 -1.82 16 11 C -0.15 -1.72 6.14 30.68 0.19 -1.53 16 12 C 0.05 0.57 6.84 72.01 0.49 1.07 16 13 O -0.38 -5.78 10.77 -148.98 -1.60 -7.39 16 14 C 0.07 1.01 6.01 72.01 0.43 1.45 16 15 S 0.16 7.38 18.35 -56.49 -1.04 6.34 16 16 C -0.28 -12.50 6.67 67.00 0.45 -12.06 16 17 S 0.06 2.95 18.70 -56.49 -1.06 1.89 16 18 C -0.57 -33.00 9.80 67.87 0.67 -32.33 16 19 H 0.07 4.30 6.21 -2.91 -0.02 4.28 16 20 C 0.05 2.76 5.49 84.74 0.47 3.22 16 21 N -0.91 -54.70 13.98 21.59 0.30 -54.40 16 22 Si 0.91 40.82 27.73 68.60 1.90 42.73 16 23 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.22 -9.08 6.73 99.48 0.67 -8.41 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 2.20 7.37 -2.39 -0.02 2.18 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.44 7.40 8.30 -92.71 -0.77 6.63 16 30 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.12 1.21 7.65 -2.39 -0.02 1.19 16 37 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.28 15.50 8.32 -92.71 -0.77 14.73 16 Total: -1.00 -73.94 339.55 1.09 -72.85 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.30 Total: 13.20 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 5.93 Total: -19.11 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -3.29 Total: -90.92 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.65 Total: -26.98 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.90 Total: 42.73 kcal Atomic # 16 Polarization: 10.33 SS G_CDS: -2.09 Total: 8.24 kcal Total: -73.94 1.09 -72.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170793663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.891 kcal (2) G-P(sol) polarization free energy of solvation -73.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds