Wall clock time and date at job start Tue Mar 31 2020 14:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31591 * 122.22896 * 2 1 4 4 C 1.29948 * 117.13856 * 180.02562 * 3 2 1 5 5 N 1.38891 * 125.36815 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00527 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00559 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.52540 * 59.99545 * 8 6 5 10 10 C 1.53175 * 109.52870 * 180.12480 * 8 6 5 11 11 C 1.53169 * 109.04120 * 176.88165 * 10 8 6 12 12 C 1.53091 * 109.16562 * 303.01970 * 11 10 8 13 13 O 1.42909 * 109.41232 * 57.61041 * 12 11 10 14 14 C 1.42914 * 114.15153 * 298.87089 * 13 12 11 15 15 S 1.76146 * 109.26773 * 359.73919 * 4 3 2 16 16 C 1.34648 * 122.23412 * 180.02562 * 2 1 3 17 17 S 1.76211 * 125.92693 * 359.97438 * 16 2 1 18 18 C 1.76203 * 99.99926 * 180.02562 * 17 16 2 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38422 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31814 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00223 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 269.99838 * 22 20 18 24 24 H 1.48496 * 109.47029 * 29.99854 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99684 * 22 20 18 26 26 H 1.08998 * 109.47279 * 269.97506 * 1 2 3 27 27 H 1.09008 * 109.47215 * 29.97621 * 1 2 3 28 28 H 1.09000 * 109.47099 * 149.97550 * 1 2 3 29 29 H 0.97001 * 119.99890 * 0.02562 * 5 4 3 30 30 H 1.09001 * 109.53876 * 296.75380 * 10 8 6 31 31 H 1.09007 * 109.54216 * 57.01444 * 10 8 6 32 32 H 1.09002 * 109.52024 * 62.92664 * 11 10 8 33 33 H 1.09004 * 109.52698 * 183.04568 * 11 10 8 34 34 H 1.08999 * 109.48039 * 177.58715 * 12 11 10 35 35 H 1.08992 * 109.47912 * 297.62467 * 12 11 10 36 36 H 1.08998 * 109.42650 * 301.11529 * 14 13 12 37 37 H 1.08997 * 109.53544 * 181.07799 * 14 13 12 38 38 H 0.97005 * 119.99830 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4044 2.0547 -0.0001 6 6 5.7297 1.8101 -0.0012 7 8 6.1355 0.6671 -0.0022 8 6 6.7076 2.9567 -0.0002 9 1 6.5536 3.5660 0.8904 10 6 8.1382 2.4095 -0.0050 11 6 9.1213 3.5816 -0.0826 12 6 8.8135 4.4139 -1.3301 13 8 7.4588 4.8661 -1.2771 14 6 6.4919 3.8141 -1.2501 15 16 3.9345 -0.7099 0.0065 16 6 2.2251 -1.1390 -0.0005 17 16 1.5696 -2.7746 -0.0006 18 6 3.0666 -3.7041 -0.0006 19 1 4.0187 -3.1943 -0.0009 20 6 3.0222 -5.0876 -0.0012 21 7 1.8601 -5.7098 -0.0013 22 14 4.6091 -6.0731 -0.0019 23 1 5.0293 -6.3336 -1.4022 24 1 5.6694 -5.3045 0.6983 25 1 4.3902 -7.3646 0.6977 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8903 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.0799 2.9688 0.0010 30 1 8.3156 1.8448 0.9103 31 1 8.2771 1.7593 -0.8688 32 1 9.0164 4.2044 0.8058 33 1 10.1403 3.1991 -0.1411 34 1 9.4824 5.2736 -1.3676 35 1 8.9578 3.8016 -2.2202 36 1 6.6051 3.1947 -2.1398 37 1 5.4892 4.2411 -1.2295 38 1 1.0360 -5.1980 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170793664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:13 Heat of formation + Delta-G solvation = -60.303144 kcal Electronic energy + Delta-G solvation = -22827.517637 eV Core-core repulsion = 19308.173037 eV Total energy + Delta-G solvation = -3519.344600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80939 -39.18087 -38.51838 -34.95155 -33.99467 -32.96419 -31.96655 -30.44324 -27.21498 -25.68463 -25.21329 -25.10379 -23.33445 -21.42572 -20.63827 -19.66486 -18.59567 -17.77121 -17.24458 -16.73548 -16.36072 -16.11862 -15.57452 -15.18123 -14.80303 -14.41339 -14.06207 -14.00257 -13.89785 -13.38342 -13.23759 -12.96377 -12.67448 -12.41747 -12.26401 -11.99108 -11.94659 -11.51652 -11.36872 -11.15569 -10.95838 -10.77687 -10.68194 -10.34558 -10.26732 -10.03741 -9.78504 -9.55972 -9.12512 -8.80661 -8.62915 -7.92756 -6.99430 -6.65696 -4.37004 1.24878 1.74647 2.31004 2.41145 2.73102 3.04254 3.24476 3.27387 3.41907 3.45566 3.49013 3.99661 4.15299 4.36938 4.37738 4.52716 4.68764 4.83319 4.86590 4.90066 4.96612 5.08092 5.17158 5.26412 5.35874 5.45040 5.56524 5.74432 5.84901 5.91557 6.02368 6.11568 6.32008 6.36893 6.69519 6.83451 7.04541 7.66258 7.84104 8.13135 8.38307 8.82207 10.42102 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.003456 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.183235 B = 8100.723403 C = 9745.110443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.026 3.974 3 N -0.476 5.476 4 C 0.190 3.810 5 N -0.615 5.615 6 C 0.511 3.489 7 O -0.499 6.499 8 C -0.133 4.133 9 H 0.112 0.888 10 C -0.105 4.105 11 C -0.155 4.155 12 C 0.055 3.945 13 O -0.375 6.375 14 C 0.070 3.930 15 S 0.213 5.787 16 C -0.239 4.239 17 S 0.087 5.913 18 C -0.622 4.622 19 H 0.083 0.917 20 C 0.046 3.954 21 N -0.870 5.870 22 Si 1.084 2.916 23 H -0.278 1.278 24 H -0.280 1.280 25 H -0.275 1.275 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.415 0.585 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 18.636 -0.943 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.116 4.116 3 N -0.198 5.198 4 C -0.181 4.181 5 N -0.264 5.264 6 C 0.296 3.704 7 O -0.373 6.373 8 C -0.155 4.155 9 H 0.130 0.870 10 C -0.143 4.143 11 C -0.193 4.193 12 C -0.021 4.021 13 O -0.293 6.293 14 C -0.008 4.008 15 S 0.457 5.543 16 C -0.476 4.476 17 S 0.336 5.664 18 C -0.771 4.771 19 H 0.101 0.899 20 C -0.166 4.166 21 N -0.503 5.503 22 Si 0.908 3.092 23 H -0.204 1.204 24 H -0.205 1.205 25 H -0.200 1.200 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.252 0.748 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.594 15.860 -0.931 19.096 hybrid contribution -0.241 2.298 0.086 2.313 sum 10.353 18.158 -0.845 20.920 Atomic orbital electron populations 1.20135 0.87949 1.02207 1.01901 1.19092 0.96803 0.84585 1.11163 1.65849 1.02846 1.32225 1.18856 1.23892 0.89971 0.93161 1.11067 1.42494 1.04472 1.08098 1.71363 1.20706 0.81713 0.91294 0.76697 1.90717 1.76965 1.22410 1.47160 1.21959 0.95503 0.95513 1.02520 0.86971 1.21457 0.90835 0.97428 1.04594 1.22223 1.00053 0.97513 0.99519 1.22680 0.83245 0.99225 0.96986 1.87969 1.15201 1.31513 1.94662 1.22550 0.93391 0.89555 0.95285 1.85924 1.01306 0.95026 1.72004 1.28321 1.01441 1.05195 1.12636 1.82515 1.12966 0.87612 1.83353 1.24166 0.92963 0.96360 1.63571 0.89875 1.26200 1.04566 0.94133 0.91663 1.70950 0.98208 1.39086 1.42011 0.83323 0.72548 0.75628 0.77714 1.20424 1.20539 1.20037 0.91745 0.91711 0.91112 0.74751 0.90192 0.90466 0.90784 0.90152 0.88529 0.92785 0.92062 0.88116 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.03 0.54 6.73 -83.97 -0.57 -0.03 16 3 N -0.48 -9.37 10.55 -9.79 -0.10 -9.47 16 4 C 0.19 3.55 8.40 -87.19 -0.73 2.82 16 5 N -0.61 -8.50 5.30 -11.78 -0.06 -8.56 16 6 C 0.51 6.83 7.12 -10.99 -0.08 6.75 16 7 O -0.50 -8.69 13.49 5.55 0.07 -8.61 16 8 C -0.13 -1.22 2.72 -91.63 -0.25 -1.47 16 9 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 10 C -0.11 -0.95 4.62 -26.55 -0.12 -1.07 16 11 C -0.16 -1.04 6.14 -26.60 -0.16 -1.20 16 12 C 0.06 0.38 6.85 37.20 0.25 0.63 16 13 O -0.38 -3.33 10.76 -35.23 -0.38 -3.71 16 14 C 0.07 0.58 6.01 37.21 0.22 0.80 16 15 S 0.21 4.65 18.35 -107.50 -1.97 2.68 16 16 C -0.24 -5.51 6.67 29.46 0.20 -5.31 16 17 S 0.09 2.16 19.77 -107.50 -2.12 0.04 16 18 C -0.62 -17.10 9.26 30.80 0.29 -16.82 16 19 H 0.08 2.28 5.97 -52.49 -0.31 1.97 16 20 C 0.05 1.26 5.49 -17.49 -0.10 1.16 16 21 N -0.87 -24.93 13.68 55.47 0.76 -24.17 16 22 Si 1.08 24.08 29.91 -169.99 -5.08 19.00 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.07 1.22 7.37 -51.93 -0.38 0.84 16 29 H 0.41 4.28 8.29 -40.82 -0.34 3.94 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.78 8.03 -51.92 -0.42 0.36 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.68 7.65 -51.93 -0.40 0.29 16 38 H 0.28 7.85 7.12 -40.82 -0.29 7.55 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -32.52 340.88 -9.18 -41.70 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.74 Total: 0.41 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.69 Total: -14.44 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.59 Total: -42.20 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.30 Total: -12.32 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -4.10 Total: 2.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.52 -9.18 -41.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170793664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.601 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds