Wall clock time and date at job start Tue Mar 31 2020 14:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31591 * 122.22896 * 2 1 4 4 C 1.29948 * 117.13856 * 180.02562 * 3 2 1 5 5 N 1.38891 * 125.36815 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00527 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99705 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00559 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.52540 * 59.99545 * 8 6 5 10 10 C 1.53175 * 109.52870 * 180.12480 * 8 6 5 11 11 C 1.53169 * 109.04120 * 176.88165 * 10 8 6 12 12 C 1.53091 * 109.16562 * 303.01970 * 11 10 8 13 13 O 1.42909 * 109.41232 * 57.61041 * 12 11 10 14 14 C 1.42914 * 114.15153 * 298.87089 * 13 12 11 15 15 S 1.76146 * 109.26773 * 359.73919 * 4 3 2 16 16 C 1.34648 * 122.23412 * 180.02562 * 2 1 3 17 17 S 1.76211 * 125.92693 * 359.97438 * 16 2 1 18 18 C 1.76203 * 99.99926 * 180.02562 * 17 16 2 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38422 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31814 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00223 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 269.99838 * 22 20 18 24 24 H 1.48496 * 109.47029 * 29.99854 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99684 * 22 20 18 26 26 H 1.08998 * 109.47279 * 269.97506 * 1 2 3 27 27 H 1.09008 * 109.47215 * 29.97621 * 1 2 3 28 28 H 1.09000 * 109.47099 * 149.97550 * 1 2 3 29 29 H 0.97001 * 119.99890 * 0.02562 * 5 4 3 30 30 H 1.09001 * 109.53876 * 296.75380 * 10 8 6 31 31 H 1.09007 * 109.54216 * 57.01444 * 10 8 6 32 32 H 1.09002 * 109.52024 * 62.92664 * 11 10 8 33 33 H 1.09004 * 109.52698 * 183.04568 * 11 10 8 34 34 H 1.08999 * 109.48039 * 177.58715 * 12 11 10 35 35 H 1.08992 * 109.47912 * 297.62467 * 12 11 10 36 36 H 1.08998 * 109.42650 * 301.11529 * 14 13 12 37 37 H 1.08997 * 109.53544 * 181.07799 * 14 13 12 38 38 H 0.97005 * 119.99830 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5031 0.9979 -0.0005 5 7 4.4044 2.0547 -0.0001 6 6 5.7297 1.8101 -0.0012 7 8 6.1355 0.6671 -0.0022 8 6 6.7076 2.9567 -0.0002 9 1 6.5536 3.5660 0.8904 10 6 8.1382 2.4095 -0.0050 11 6 9.1213 3.5816 -0.0826 12 6 8.8135 4.4139 -1.3301 13 8 7.4588 4.8661 -1.2771 14 6 6.4919 3.8141 -1.2501 15 16 3.9345 -0.7099 0.0065 16 6 2.2251 -1.1390 -0.0005 17 16 1.5696 -2.7746 -0.0006 18 6 3.0666 -3.7041 -0.0006 19 1 4.0187 -3.1943 -0.0009 20 6 3.0222 -5.0876 -0.0012 21 7 1.8601 -5.7098 -0.0013 22 14 4.6091 -6.0731 -0.0019 23 1 5.0293 -6.3336 -1.4022 24 1 5.6694 -5.3045 0.6983 25 1 4.3902 -7.3646 0.6977 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8903 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.0799 2.9688 0.0010 30 1 8.3156 1.8448 0.9103 31 1 8.2771 1.7593 -0.8688 32 1 9.0164 4.2044 0.8058 33 1 10.1403 3.1991 -0.1411 34 1 9.4824 5.2736 -1.3676 35 1 8.9578 3.8016 -2.2202 36 1 6.6051 3.1947 -2.1398 37 1 5.4892 4.2411 -1.2295 38 1 1.0360 -5.1980 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170793664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:12 Heat of formation + Delta-G solvation = -81.913913 kcal Electronic energy + Delta-G solvation = -22828.454750 eV Core-core repulsion = 19308.173037 eV Total energy + Delta-G solvation = -3520.281714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91232 -40.46012 -39.66180 -36.30584 -35.00654 -34.74383 -32.82353 -31.76545 -28.84620 -27.23296 -26.59106 -25.88433 -24.50032 -22.63241 -21.74473 -21.02172 -20.27669 -19.29160 -18.52637 -17.73232 -17.51745 -17.16721 -16.58256 -16.39095 -15.94737 -15.88896 -15.62336 -15.17596 -14.95542 -14.74154 -14.68485 -14.23535 -14.14003 -13.64855 -13.54243 -13.38514 -12.96554 -12.74898 -12.42250 -12.23767 -12.16570 -12.16094 -11.99144 -11.91997 -11.49186 -11.33605 -11.24038 -10.83152 -10.60113 -10.55908 -10.50390 -9.64605 -9.11203 -8.52654 -6.44544 -0.35468 0.09083 0.71206 1.07006 1.23751 1.42609 1.51129 1.53055 1.73447 1.90427 2.17117 2.77378 2.84569 2.91202 3.30940 3.53132 3.63525 3.70563 3.93184 4.07919 4.16819 4.31110 4.39568 4.55657 4.58213 4.66358 4.75127 4.75464 4.85805 4.87757 4.95438 5.02903 5.08525 5.28602 5.36075 5.52676 5.83094 6.00499 6.10766 6.65705 6.75610 6.78563 8.31474 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.003456 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.183235 B = 8100.723403 C = 9745.110443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.046 3.954 3 N -0.483 5.483 4 C 0.232 3.768 5 N -0.602 5.602 6 C 0.514 3.486 7 O -0.534 6.534 8 C -0.120 4.120 9 H 0.139 0.861 10 C -0.109 4.109 11 C -0.147 4.147 12 C 0.049 3.951 13 O -0.384 6.384 14 C 0.071 3.929 15 S 0.167 5.833 16 C -0.275 4.275 17 S 0.046 5.954 18 C -0.637 4.637 19 H 0.075 0.925 20 C 0.002 3.998 21 N -0.897 5.897 22 Si 1.124 2.876 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.267 1.267 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.437 0.563 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.543 21.858 -0.887 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 N -0.205 5.205 4 C -0.141 4.141 5 N -0.254 5.254 6 C 0.301 3.699 7 O -0.410 6.410 8 C -0.141 4.141 9 H 0.156 0.844 10 C -0.147 4.147 11 C -0.184 4.184 12 C -0.027 4.027 13 O -0.302 6.302 14 C -0.007 4.007 15 S 0.412 5.588 16 C -0.510 4.510 17 S 0.292 5.708 18 C -0.785 4.785 19 H 0.093 0.907 20 C -0.203 4.203 21 N -0.531 5.531 22 Si 0.941 3.059 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.191 1.191 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.279 0.721 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.978 19.169 -0.881 22.620 hybrid contribution -0.543 1.692 0.067 1.778 sum 11.435 20.861 -0.815 23.803 Atomic orbital electron populations 1.20276 0.85533 1.03285 1.03235 1.19769 0.98537 0.84129 1.07043 1.66072 1.02683 1.31086 1.20656 1.24231 0.90298 0.93184 1.06359 1.42693 1.04044 1.07962 1.70721 1.21658 0.81647 0.91931 0.74635 1.90722 1.77357 1.24538 1.48355 1.22024 0.93897 0.93863 1.04336 0.84358 1.21489 0.91510 0.98258 1.03428 1.22186 0.99942 0.96448 0.99866 1.22870 0.82731 1.00126 0.96998 1.87972 1.15985 1.31651 1.94604 1.22591 0.94448 0.89425 0.94194 1.86114 1.01797 0.97916 1.72936 1.28178 1.01895 1.04541 1.16405 1.82346 1.12569 0.89241 1.86627 1.24370 0.93609 0.97017 1.63542 0.90681 1.27560 1.06616 0.95363 0.90789 1.71026 0.98451 1.39081 1.44495 0.82863 0.69494 0.74806 0.78687 1.18834 1.19672 1.19145 0.90157 0.89165 0.91441 0.72100 0.91168 0.92040 0.89905 0.88860 0.86596 0.92778 0.92781 0.86234 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.23 0.71 -1.39 16 2 C 0.05 1.88 6.73 41.77 0.28 2.16 16 3 N -0.48 -17.94 10.55 -184.87 -1.95 -19.90 16 4 C 0.23 8.28 8.40 179.15 1.50 9.78 16 5 N -0.60 -14.97 5.30 -309.58 -1.64 -16.62 16 6 C 0.51 12.68 7.12 87.66 0.62 13.30 16 7 O -0.53 -18.25 13.49 -3.06 -0.04 -18.29 16 8 C -0.12 -1.85 2.72 -11.45 -0.03 -1.88 16 9 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 10 C -0.11 -1.76 4.62 30.71 0.14 -1.61 16 11 C -0.15 -1.53 6.14 30.68 0.19 -1.35 16 12 C 0.05 0.52 6.85 72.01 0.49 1.02 16 13 O -0.38 -5.53 10.76 -148.98 -1.60 -7.13 16 14 C 0.07 0.95 6.01 72.02 0.43 1.39 16 15 S 0.17 7.38 18.35 -56.49 -1.04 6.34 16 16 C -0.27 -12.83 6.67 67.00 0.45 -12.38 16 17 S 0.05 2.40 19.77 -56.49 -1.12 1.28 16 18 C -0.64 -36.37 9.26 67.86 0.63 -35.74 16 19 H 0.08 4.29 5.97 -2.91 -0.02 4.27 16 20 C 0.00 0.13 5.49 84.74 0.46 0.59 16 21 N -0.90 -53.08 13.68 21.59 0.30 -52.79 16 22 Si 1.12 49.23 29.91 68.60 2.05 51.28 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.07 2.29 7.37 -2.39 -0.02 2.27 16 29 H 0.44 7.26 8.29 -92.71 -0.77 6.50 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.18 8.03 -2.38 -0.02 1.17 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.76 8.14 -2.38 -0.02 0.75 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.12 1.13 7.65 -2.39 -0.02 1.12 16 38 H 0.27 15.84 7.12 -92.70 -0.66 15.18 16 Total: -1.00 -72.71 340.88 1.29 -71.42 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.44 Total: 10.51 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 5.89 Total: -26.11 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.30 Total: -89.30 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.64 Total: -25.42 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Atomic # 16 Polarization: 9.77 SS G_CDS: -2.15 Total: 7.62 kcal Total: -72.71 1.29 -71.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170793664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.496 kcal (2) G-P(sol) polarization free energy of solvation -72.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds