Wall clock time and date at job start Tue Mar 31 2020 15:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00339 * 3 2 1 5 5 H 1.48498 * 109.47084 * 29.99882 * 3 2 1 6 6 H 1.48495 * 109.47407 * 150.00194 * 3 2 1 7 7 C 1.37882 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46984 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46806 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00010 * 179.97438 * 12 11 10 14 14 O 1.21358 * 120.00102 * 0.02562 * 13 12 11 15 15 C 1.49351 * 120.00282 * 180.02562 * 13 12 11 16 16 O 1.21380 * 119.99516 * 359.97438 * 15 13 12 17 17 N 1.34775 * 120.00282 * 180.02562 * 15 13 12 18 18 C 1.39762 * 120.00050 * 185.52594 * 17 15 13 19 19 C 1.38884 * 120.06959 * 24.83810 * 18 17 15 20 20 C 1.38305 * 119.91428 * 179.72500 * 19 18 17 21 21 F 1.35103 * 119.97908 * 180.25527 * 20 19 18 22 22 C 1.38533 * 120.04562 * 0.54955 * 20 19 18 23 23 C 1.38243 * 120.13685 * 359.72596 * 22 20 19 24 24 C 1.38224 * 120.08479 * 359.97438 * 23 22 20 25 25 Cl 1.73602 * 120.02100 * 179.97438 * 24 23 22 26 26 H 0.97003 * 119.99472 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47292 * 60.00133 * 9 7 2 28 28 H 1.08997 * 109.47287 * 300.00312 * 9 7 2 29 29 H 1.08999 * 109.47014 * 59.99806 * 10 9 7 30 30 H 1.09006 * 109.47006 * 300.00002 * 10 9 7 31 31 H 1.08994 * 109.47044 * 60.00126 * 11 10 9 32 32 H 1.09006 * 109.47172 * 299.99804 * 11 10 9 33 33 H 0.96996 * 120.00106 * 0.02562 * 12 11 10 34 34 H 0.97004 * 119.99767 * 5.79901 * 17 15 13 35 35 H 1.08000 * 120.04201 * 359.97438 * 19 18 17 36 36 H 1.07995 * 119.93106 * 179.69899 * 22 20 19 37 37 H 1.07995 * 119.95783 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0018 13 6 1.9829 -7.3713 -0.0019 14 8 0.7897 -7.5931 -0.0020 15 6 2.9533 -8.5066 -0.0020 16 8 4.1467 -8.2847 -0.0024 17 7 2.5041 -9.7772 -0.0026 18 6 3.4069 -10.8377 0.1139 19 6 4.6371 -10.6401 0.7275 20 6 5.5258 -11.6932 0.8462 21 9 6.7207 -11.5037 1.4474 22 6 5.1940 -12.9407 0.3435 23 6 3.9724 -13.1383 -0.2728 24 6 3.0775 -12.0913 -0.3889 25 17 1.5442 -12.3410 -1.1636 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 0.8539 -5.0446 -0.8914 32 1 0.8532 -5.0451 0.8886 33 1 3.3858 -5.9234 -0.0014 34 1 1.5544 -9.9558 -0.0879 35 1 4.8978 -9.6663 1.1151 36 1 5.8914 -13.7605 0.4328 37 1 3.7170 -14.1119 -0.6640 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171473708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:34 Heat of formation + Delta-G solvation = -122.274722 kcal Electronic energy + Delta-G solvation = -23823.243813 eV Core-core repulsion = 19732.955041 eV Total energy + Delta-G solvation = -4090.288772 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.04243 -42.40927 -40.67033 -39.42087 -37.57001 -37.30413 -36.23389 -35.20005 -33.08918 -31.80285 -30.96135 -29.00838 -26.64351 -24.98431 -24.14619 -23.27072 -22.40057 -21.50236 -20.13866 -19.16312 -18.47965 -18.25538 -17.75017 -17.56123 -17.17819 -16.83906 -16.76885 -16.52684 -16.31057 -16.19767 -15.33579 -15.20398 -14.94416 -14.61650 -14.37733 -14.28677 -13.79149 -13.67652 -13.54941 -13.29099 -12.76859 -12.68807 -12.60141 -12.52584 -12.41251 -12.12025 -11.85680 -11.70779 -11.55671 -11.24298 -10.85578 -10.54903 -10.37794 -9.96799 -9.43698 -8.19827 -6.30437 -0.47177 -0.14281 0.31446 0.83794 1.00731 1.42154 1.42695 1.53764 1.84059 2.26737 2.30883 2.42434 3.02526 3.14272 3.19162 3.47428 3.86875 3.88613 4.05637 4.07402 4.17462 4.50407 4.51720 4.68349 4.81153 4.87960 4.90940 4.92833 4.98620 5.14227 5.17809 5.51247 5.56447 5.61039 5.70767 5.84511 6.06990 6.23221 6.38247 6.71487 6.86723 7.38905 8.91965 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002012 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.819107 B =13913.070805 C =15033.609185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.126 3.874 12 N -0.680 5.680 13 C 0.507 3.493 14 O -0.539 6.539 15 C 0.520 3.480 16 O -0.503 6.503 17 N -0.634 5.634 18 C 0.172 3.828 19 C -0.174 4.174 20 C 0.118 3.882 21 F -0.137 7.137 22 C -0.144 4.144 23 C -0.046 4.046 24 C -0.081 4.081 25 Cl -0.048 7.048 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.421 0.579 34 H 0.432 0.568 35 H 0.151 0.849 36 H 0.179 0.821 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.410 -31.533 -0.264 32.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.332 5.332 13 C 0.287 3.713 14 O -0.417 6.417 15 C 0.302 3.698 16 O -0.377 6.377 17 N -0.281 5.281 18 C 0.076 3.924 19 C -0.195 4.195 20 C 0.098 3.902 21 F -0.116 7.116 22 C -0.163 4.163 23 C -0.065 4.065 24 C -0.111 4.111 25 Cl -0.019 7.019 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.259 0.741 34 H 0.273 0.727 35 H 0.168 0.832 36 H 0.196 0.804 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.123 -31.326 -0.294 32.629 hybrid contribution -0.034 1.386 0.056 1.388 sum 9.089 -29.939 -0.239 31.290 Atomic orbital electron populations 1.70098 1.07774 1.27758 1.51669 1.25980 0.95761 1.03394 0.94866 0.85452 0.78680 0.78528 0.78415 1.19887 1.21019 1.18651 1.21677 0.93706 0.92127 1.50425 0.91770 1.18936 0.94365 0.92555 0.95483 1.21647 0.98643 0.91804 1.02329 1.21540 0.91515 0.84244 1.02338 1.45850 1.12517 1.04338 1.70515 1.19838 0.88108 0.84494 0.78865 1.90793 1.16636 1.84804 1.49470 1.20200 0.88475 0.84133 0.76984 1.90763 1.16258 1.84604 1.46084 1.43131 1.12157 1.03509 1.69313 1.17208 0.90787 0.86576 0.97845 1.21230 0.93723 1.01330 1.03217 1.17678 0.81603 0.94567 0.96397 1.91531 1.43072 1.95956 1.81001 1.21466 0.98612 0.96223 1.00002 1.21129 0.90594 0.98958 0.95805 1.20864 0.91601 0.94256 1.04344 1.98408 1.27810 1.96541 1.79182 0.92810 0.98483 0.98477 0.91363 0.91368 0.91394 0.91386 0.74097 0.72685 0.83178 0.80407 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.11 -3.92 5.27 30.60 0.16 -3.76 16 11 C 0.13 4.07 5.67 86.38 0.49 4.56 16 12 N -0.68 -18.29 5.55 -464.52 -2.58 -20.87 16 13 C 0.51 13.74 7.89 87.24 0.69 14.43 16 14 O -0.54 -16.98 16.48 -3.27 -0.05 -17.03 16 15 C 0.52 12.35 7.69 87.24 0.67 13.02 16 16 O -0.50 -13.08 13.64 -3.34 -0.05 -13.12 16 17 N -0.63 -12.70 5.17 -304.78 -1.58 -14.28 16 18 C 0.17 3.14 6.43 38.22 0.25 3.39 16 19 C -0.17 -3.39 8.69 22.44 0.20 -3.19 16 20 C 0.12 1.89 7.30 22.36 0.16 2.05 16 21 F -0.14 -2.51 17.27 44.97 0.78 -1.74 16 22 C -0.14 -1.37 10.02 22.34 0.22 -1.14 16 23 C -0.05 -0.40 9.82 22.27 0.22 -0.18 16 24 C -0.08 -1.13 6.34 22.45 0.14 -0.98 16 25 Cl -0.05 -0.65 27.78 -2.72 -0.08 -0.73 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.42 9.93 7.94 -92.71 -0.74 9.19 16 34 H 0.43 7.97 7.24 -92.71 -0.67 7.29 16 35 H 0.15 3.42 5.79 -2.91 -0.02 3.41 16 36 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -66.69 346.68 2.54 -64.15 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.26 Total: 13.42 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.04 Total: 0.39 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.87 Total: -90.90 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.10 Total: -30.15 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -66.69 2.54 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171473708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.125 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds