Wall clock time and date at job start Tue Mar 31 2020 15:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47285 * 269.99690 * 3 2 1 5 5 H 1.48490 * 109.47496 * 30.00079 * 3 2 1 6 6 H 1.48503 * 109.47117 * 150.00417 * 3 2 1 7 7 C 1.37882 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99869 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46780 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46639 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46782 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00232 * 180.02562 * 12 11 10 14 14 O 1.21361 * 119.99674 * 0.02562 * 13 12 11 15 15 C 1.49346 * 120.00265 * 179.97438 * 13 12 11 16 16 O 1.21371 * 120.00100 * 0.02562 * 15 13 12 17 17 N 1.34781 * 119.99900 * 180.02562 * 15 13 12 18 18 C 1.39758 * 119.99801 * 185.27964 * 17 15 13 19 19 C 1.38954 * 120.04958 * 213.33466 * 18 17 15 20 20 C 1.38092 * 119.98471 * 180.02562 * 19 18 17 21 21 C 1.38367 * 120.08729 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 119.94956 * 180.28590 * 21 20 19 23 23 C 1.38605 * 120.10313 * 0.02562 * 21 20 19 24 24 F 1.35094 * 119.99203 * 179.97438 * 23 21 20 25 25 C 1.38319 * 120.01351 * 359.97438 * 23 21 20 26 26 H 0.97000 * 119.99690 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47091 * 59.99693 * 9 7 2 28 28 H 1.09006 * 109.46841 * 299.99950 * 9 7 2 29 29 H 1.08999 * 109.47050 * 59.99884 * 10 9 7 30 30 H 1.08998 * 109.47350 * 299.99820 * 10 9 7 31 31 H 1.08999 * 109.47148 * 60.00368 * 11 10 9 32 32 H 1.08998 * 109.47863 * 299.99840 * 11 10 9 33 33 H 0.96999 * 120.00325 * 0.02562 * 12 11 10 34 34 H 0.97003 * 120.00140 * 5.27795 * 17 15 13 35 35 H 1.07998 * 120.00614 * 0.03711 * 19 18 17 36 36 H 1.08006 * 119.95606 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.04195 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4320 -6.1006 -0.0005 13 6 1.9828 -7.3713 -0.0006 14 8 0.7896 -7.5930 -0.0007 15 6 2.9533 -8.5065 -0.0018 16 8 4.1465 -8.2848 -0.0022 17 7 2.5039 -9.7772 -0.0025 18 6 3.4073 -10.8378 0.1078 19 6 3.1523 -12.0394 -0.5418 20 6 4.0456 -13.0867 -0.4315 21 6 5.1945 -12.9416 0.3256 22 17 6.3187 -14.2580 0.4558 23 6 5.4520 -11.7450 0.9760 24 9 6.5742 -11.6060 1.7151 25 6 4.5601 -10.6933 0.8684 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6043 0.8894 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 -0.8897 32 1 0.8537 -5.0446 0.8903 33 1 3.3857 -5.9235 -0.0008 34 1 1.5535 -9.9556 -0.0794 35 1 2.2558 -12.1541 -1.1330 36 1 3.8471 -14.0203 -0.9370 37 1 4.7605 -9.7606 1.3747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171475032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:29 Heat of formation + Delta-G solvation = -103.415543 kcal Electronic energy + Delta-G solvation = -23607.935574 eV Core-core repulsion = 19518.464597 eV Total energy + Delta-G solvation = -4089.470977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.37534 -41.44047 -39.73797 -38.52849 -37.06571 -35.97974 -35.06440 -33.41190 -31.40926 -31.30897 -30.17505 -27.38080 -25.36792 -23.86336 -23.21961 -22.26387 -20.93424 -20.41820 -19.12942 -18.32840 -17.45205 -17.05362 -16.75416 -16.43604 -16.17785 -16.10264 -15.94424 -15.29497 -14.99626 -14.49602 -14.45527 -14.05964 -14.02527 -13.75386 -13.45591 -12.94423 -12.62871 -12.36656 -12.28346 -11.97629 -11.90542 -11.88323 -11.40331 -10.95267 -10.84208 -10.75180 -10.64658 -10.02763 -9.97746 -9.52159 -9.45362 -9.19192 -9.15727 -8.75490 -8.42177 -6.06978 -4.10172 0.22685 0.52441 1.16491 1.52859 1.93241 2.75369 3.02545 3.23912 3.28297 3.35008 3.37998 3.62012 4.05947 4.22379 4.36119 4.40807 4.52169 4.76769 5.13265 5.29157 5.30560 5.38572 5.46233 5.48659 5.58689 5.63359 5.97804 6.08142 6.13991 6.45028 6.45823 6.64114 6.87284 7.09505 7.37679 7.56129 7.67034 7.79999 7.91064 8.31754 8.96186 9.54483 11.04200 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.001744 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.261625 B =16047.727024 C =16782.450443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.686 5.686 13 C 0.504 3.496 14 O -0.520 6.520 15 C 0.511 3.489 16 O -0.492 6.492 17 N -0.648 5.648 18 C 0.184 3.816 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.092 4.092 22 Cl -0.050 7.050 23 C 0.135 3.865 24 F -0.121 7.121 25 C -0.149 4.149 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.429 0.571 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 -29.629 -0.316 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.397 6.397 15 C 0.293 3.707 16 O -0.365 6.365 17 N -0.295 5.295 18 C 0.089 3.911 19 C -0.161 4.161 20 C -0.079 4.079 21 C -0.120 4.120 22 Cl -0.021 7.021 23 C 0.114 3.886 24 F -0.099 7.099 25 C -0.170 4.170 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.269 0.731 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.311 -29.491 -0.257 30.385 hybrid contribution 0.724 0.890 0.089 1.151 sum 8.035 -28.602 -0.168 29.709 Atomic orbital electron populations 1.69960 1.06056 1.26763 1.50447 1.25027 0.94877 0.99352 0.95184 0.86566 0.79812 0.83324 0.78130 1.20638 1.21189 1.19864 1.21191 0.93057 0.90854 1.51118 0.92556 1.19035 0.93780 0.90761 0.97759 1.21943 0.99929 0.92850 1.01409 1.21916 0.91665 0.84528 1.02769 1.46092 1.12468 1.04814 1.70415 1.19637 0.88147 0.84283 0.79681 1.90797 1.15619 1.84492 1.48752 1.20674 0.89197 0.84133 0.76695 1.90812 1.16176 1.84445 1.45029 1.43212 1.11512 1.03817 1.70996 1.17448 0.90842 0.87868 0.94958 1.20969 1.01867 0.92062 1.01177 1.20759 0.90970 0.99714 0.96441 1.20995 0.95816 0.90032 1.05174 1.98394 1.60522 1.45994 1.97165 1.17097 0.84779 0.92859 0.93867 1.91570 1.48348 1.96047 1.73970 1.21085 0.94652 0.99881 1.01427 0.92889 0.96155 0.96159 0.92351 0.92345 0.90838 0.90834 0.75156 0.73143 0.83515 0.83212 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 12 N -0.69 -9.12 5.55 -60.76 -0.34 -9.46 16 13 C 0.50 6.49 7.89 -11.63 -0.09 6.40 16 14 O -0.52 -7.71 16.48 5.49 0.09 -7.62 16 15 C 0.51 5.66 7.62 -11.63 -0.09 5.57 16 16 O -0.49 -6.30 14.16 5.48 0.08 -6.22 16 17 N -0.65 -5.42 5.32 -10.30 -0.05 -5.47 16 18 C 0.18 1.50 6.27 -83.74 -0.53 0.98 16 19 C -0.14 -0.80 9.96 -39.37 -0.39 -1.20 16 20 C -0.06 -0.35 9.82 -39.59 -0.39 -0.74 16 21 C -0.09 -0.74 6.33 -39.40 -0.25 -0.99 16 22 Cl -0.05 -0.40 28.61 -51.86 -1.48 -1.88 16 23 C 0.13 1.29 7.27 -39.42 -0.29 1.01 16 24 F -0.12 -1.30 16.83 2.25 0.04 -1.26 16 25 C -0.15 -1.44 8.63 -39.32 -0.34 -1.78 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.41 4.94 7.94 -40.82 -0.32 4.61 16 34 H 0.43 2.76 8.30 -40.82 -0.34 2.43 16 35 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.16 1.67 6.42 -52.49 -0.34 1.34 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -31.30 349.05 -7.69 -38.99 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.92 Total: 0.99 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.08 Total: -4.02 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.34 Total: -40.38 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.17 Total: -13.85 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.30 -7.69 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.422 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds