Wall clock time and date at job start Tue Mar 31 2020 15:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47151 * 269.99890 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99848 * 3 2 1 6 6 H 1.48503 * 109.47128 * 149.99721 * 3 2 1 7 7 C 1.37873 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46923 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99954 * 180.02562 * 12 11 10 14 14 O 1.21355 * 120.00016 * 359.97438 * 13 12 11 15 15 C 1.49335 * 119.99822 * 179.97438 * 13 12 11 16 16 O 1.21385 * 120.00180 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99944 * 180.27488 * 15 13 12 18 18 C 1.39850 * 120.00302 * 175.23392 * 17 15 13 19 19 C 1.38900 * 120.05216 * 34.70435 * 18 17 15 20 20 C 1.38098 * 119.96103 * 179.67930 * 19 18 17 21 21 C 1.38521 * 120.06797 * 0.61935 * 20 19 18 22 22 F 1.35095 * 119.94078 * 179.70119 * 21 20 19 23 23 C 1.38459 * 120.11274 * 359.68107 * 21 20 19 24 24 C 1.38212 * 120.03584 * 359.97438 * 23 21 20 25 25 Cl 1.73604 * 120.03326 * 180.02562 * 24 23 21 26 26 H 0.97003 * 119.99943 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46828 * 60.00655 * 9 7 2 28 28 H 1.08994 * 109.47385 * 300.00695 * 9 7 2 29 29 H 1.08999 * 109.46864 * 60.00182 * 10 9 7 30 30 H 1.09002 * 109.47191 * 300.00328 * 10 9 7 31 31 H 1.08999 * 109.47448 * 60.00238 * 11 10 9 32 32 H 1.09002 * 109.47209 * 300.00015 * 11 10 9 33 33 H 0.97002 * 119.99965 * 359.97438 * 12 11 10 34 34 H 0.96995 * 119.99866 * 355.22908 * 17 15 13 35 35 H 1.07999 * 120.02214 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.96953 * 180.29594 * 20 19 18 37 37 H 1.07995 * 119.98362 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 7.3650 -4.2640 0.0001 14 8 8.1536 -3.3416 0.0005 15 6 7.8628 -5.6720 0.0002 16 8 7.0740 -6.5946 -0.0007 17 7 9.1878 -5.9183 0.0063 18 6 9.6543 -7.2328 0.1070 19 6 8.9476 -8.2693 -0.4893 20 6 9.4135 -9.5658 -0.3943 21 6 10.5779 -9.8353 0.3058 22 9 11.0281 -11.1054 0.4022 23 6 11.2815 -8.8052 0.9066 24 6 10.8231 -7.5050 0.8083 25 17 11.7056 -6.2133 1.5611 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8896 28 1 3.8746 -0.6808 -0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 3.6585 -3.1502 0.8903 31 1 5.9149 -2.1226 0.8901 32 1 5.9149 -2.1227 -0.8899 33 1 5.4095 -4.7550 -0.0003 34 1 9.8179 -5.1838 -0.0593 35 1 8.0372 -8.0607 -1.0316 36 1 8.8666 -10.3712 -0.8619 37 1 12.1893 -9.0176 1.4516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171475178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:25 Heat of formation + Delta-G solvation = -100.214024 kcal Electronic energy + Delta-G solvation = -23761.068849 eV Core-core repulsion = 19671.736700 eV Total energy + Delta-G solvation = -4089.332148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.41349 -41.46675 -39.79431 -38.51474 -37.04880 -36.10114 -35.18269 -33.40660 -31.62548 -31.53814 -30.00775 -27.74363 -25.33100 -24.00961 -23.15867 -22.17530 -20.92168 -20.32346 -19.10611 -18.33937 -17.99631 -17.09277 -16.76594 -16.67276 -16.19795 -16.11031 -15.47973 -15.39980 -15.03727 -14.53073 -14.34379 -14.19364 -14.05794 -13.90334 -13.61031 -13.48426 -12.76891 -12.24543 -12.17072 -12.03964 -11.98105 -11.79821 -11.64313 -11.18389 -10.96656 -10.91163 -10.27241 -10.06816 -9.86275 -9.70501 -9.56484 -9.28511 -9.22235 -8.72133 -8.59842 -6.10116 -4.09435 0.22798 0.46104 1.14070 1.39300 1.92075 2.74328 2.98976 3.25757 3.27639 3.35653 3.38429 3.68919 4.03582 4.15972 4.33386 4.40162 4.54757 4.64894 4.98755 5.23412 5.31087 5.33656 5.39519 5.48132 5.56056 5.67229 5.84586 6.00591 6.14496 6.31362 6.39052 6.52729 6.67401 7.05410 7.14840 7.28002 7.34619 7.70368 7.76466 8.45650 8.93663 9.51505 11.03003 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.001984 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.149009 B =14109.655396 C =14956.581452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.687 5.687 13 C 0.505 3.495 14 O -0.519 6.519 15 C 0.513 3.487 16 O -0.495 6.495 17 N -0.645 5.645 18 C 0.146 3.854 19 C -0.080 4.080 20 C -0.127 4.127 21 C 0.099 3.901 22 F -0.132 7.132 23 C -0.127 4.127 24 C -0.035 4.035 25 Cl -0.044 7.044 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.427 0.573 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.215 -19.059 0.022 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.338 5.338 13 C 0.284 3.716 14 O -0.395 6.395 15 C 0.296 3.704 16 O -0.368 6.368 17 N -0.293 5.293 18 C 0.050 3.950 19 C -0.100 4.100 20 C -0.146 4.146 21 C 0.079 3.921 22 F -0.110 7.110 23 C -0.147 4.147 24 C -0.065 4.065 25 Cl -0.015 7.015 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.267 0.733 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 25.075 -18.765 0.107 31.319 hybrid contribution 0.547 0.803 0.112 0.978 sum 25.622 -17.962 0.219 31.292 Atomic orbital electron populations 1.69910 1.06316 1.27001 1.50774 1.25034 0.94765 0.99251 0.94452 0.86772 0.80371 0.83541 0.78576 1.20235 1.21345 1.18921 1.21075 0.89207 0.94577 1.51301 0.90928 1.19504 0.97420 0.91161 0.96748 1.21752 0.89943 1.01390 1.02251 1.21912 0.96808 0.79694 1.02705 1.46017 1.05730 1.11419 1.70680 1.19627 0.84249 0.88173 0.79570 1.90797 1.55153 1.45006 1.48575 1.20575 0.82355 0.90751 0.76727 1.90775 1.54951 1.45508 1.45573 1.43160 1.07952 1.07321 1.70868 1.17473 0.94041 0.85270 0.98222 1.21217 1.00627 0.90315 0.97849 1.21225 0.95321 0.98069 0.99993 1.17465 0.94851 0.79104 1.00657 1.91540 1.88767 1.36153 1.94545 1.20804 1.01988 0.89691 1.02255 1.20467 0.95601 0.90186 1.00218 1.98416 1.74632 1.48254 1.80156 0.92647 0.96213 0.96651 0.91740 0.91728 0.90882 0.90872 0.75007 0.73322 0.82062 0.83320 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.11 1.64 5.67 -4.04 -0.02 1.62 16 12 N -0.69 -8.77 5.55 -60.76 -0.34 -9.11 16 13 C 0.50 6.45 7.89 -11.64 -0.09 6.36 16 14 O -0.52 -7.70 16.48 5.49 0.09 -7.61 16 15 C 0.51 5.71 7.73 -11.64 -0.09 5.62 16 16 O -0.50 -5.98 13.89 5.47 0.08 -5.91 16 17 N -0.65 -6.05 5.03 -10.26 -0.05 -6.10 16 18 C 0.15 1.28 6.30 -83.67 -0.53 0.76 16 19 C -0.08 -0.66 8.70 -39.39 -0.34 -1.00 16 20 C -0.13 -0.88 10.02 -39.53 -0.40 -1.28 16 21 C 0.10 0.73 7.30 -39.40 -0.29 0.45 16 22 F -0.13 -1.04 17.26 2.25 0.04 -1.01 16 23 C -0.13 -0.89 9.80 -39.51 -0.39 -1.28 16 24 C -0.04 -0.28 6.34 -39.31 -0.25 -0.53 16 25 Cl -0.04 -0.34 27.96 -51.86 -1.45 -1.79 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.44 7.20 -51.92 -0.37 0.07 16 28 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.41 4.73 7.94 -40.82 -0.32 4.40 16 34 H 0.43 3.68 7.56 -40.82 -0.31 3.37 16 35 H 0.16 1.38 6.20 -52.49 -0.33 1.06 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -31.02 343.98 -7.27 -38.29 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.85 Total: 2.73 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.08 Total: -4.71 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.38 Total: -41.73 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.17 Total: -13.51 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.45 Total: -1.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.02 -7.27 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.921 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds