Wall clock time and date at job start Tue Mar 31 2020 15:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47151 * 269.99890 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99848 * 3 2 1 6 6 H 1.48503 * 109.47128 * 149.99721 * 3 2 1 7 7 C 1.37873 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47360 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46923 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99954 * 180.02562 * 12 11 10 14 14 O 1.21355 * 120.00016 * 359.97438 * 13 12 11 15 15 C 1.49335 * 119.99822 * 179.97438 * 13 12 11 16 16 O 1.21385 * 120.00180 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99944 * 180.27488 * 15 13 12 18 18 C 1.39850 * 120.00302 * 175.23392 * 17 15 13 19 19 C 1.38900 * 120.05216 * 34.70435 * 18 17 15 20 20 C 1.38098 * 119.96103 * 179.67930 * 19 18 17 21 21 C 1.38521 * 120.06797 * 0.61935 * 20 19 18 22 22 F 1.35095 * 119.94078 * 179.70119 * 21 20 19 23 23 C 1.38459 * 120.11274 * 359.68107 * 21 20 19 24 24 C 1.38212 * 120.03584 * 359.97438 * 23 21 20 25 25 Cl 1.73604 * 120.03326 * 180.02562 * 24 23 21 26 26 H 0.97003 * 119.99943 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46828 * 60.00655 * 9 7 2 28 28 H 1.08994 * 109.47385 * 300.00695 * 9 7 2 29 29 H 1.08999 * 109.46864 * 60.00182 * 10 9 7 30 30 H 1.09002 * 109.47191 * 300.00328 * 10 9 7 31 31 H 1.08999 * 109.47448 * 60.00238 * 11 10 9 32 32 H 1.09002 * 109.47209 * 300.00015 * 11 10 9 33 33 H 0.97002 * 119.99965 * 359.97438 * 12 11 10 34 34 H 0.96995 * 119.99866 * 355.22908 * 17 15 13 35 35 H 1.07999 * 120.02214 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.96953 * 180.29594 * 20 19 18 37 37 H 1.07995 * 119.98362 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 7 6.0399 -4.0177 -0.0004 13 6 7.3650 -4.2640 0.0001 14 8 8.1536 -3.3416 0.0005 15 6 7.8628 -5.6720 0.0002 16 8 7.0740 -6.5946 -0.0007 17 7 9.1878 -5.9183 0.0063 18 6 9.6543 -7.2328 0.1070 19 6 8.9476 -8.2693 -0.4893 20 6 9.4135 -9.5658 -0.3943 21 6 10.5779 -9.8353 0.3058 22 9 11.0281 -11.1054 0.4022 23 6 11.2815 -8.8052 0.9066 24 6 10.8231 -7.5050 0.8083 25 17 11.7056 -6.2133 1.5611 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8896 28 1 3.8746 -0.6808 -0.8904 29 1 3.6579 -3.1505 -0.8897 30 1 3.6585 -3.1502 0.8903 31 1 5.9149 -2.1226 0.8901 32 1 5.9149 -2.1227 -0.8899 33 1 5.4095 -4.7550 -0.0003 34 1 9.8179 -5.1838 -0.0593 35 1 8.0372 -8.0607 -1.0316 36 1 8.8666 -10.3712 -0.8619 37 1 12.1893 -9.0176 1.4516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171475178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:25 Heat of formation + Delta-G solvation = -120.564145 kcal Electronic energy + Delta-G solvation = -23761.951296 eV Core-core repulsion = 19671.736700 eV Total energy + Delta-G solvation = -4090.214596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.01017 -42.31015 -40.64560 -39.36323 -37.65111 -37.28398 -36.11905 -35.12490 -33.31673 -32.17759 -30.71410 -29.29357 -26.46633 -24.76669 -24.27725 -23.11453 -22.28960 -21.42804 -20.05117 -19.08519 -18.87699 -18.66089 -17.78169 -17.59415 -17.15596 -16.76757 -16.59015 -16.22952 -16.09640 -15.92856 -15.26897 -15.13461 -15.00655 -14.77617 -14.72158 -14.36989 -14.14095 -13.81581 -13.63933 -13.02973 -12.75737 -12.72062 -12.67052 -12.46117 -12.25395 -11.90644 -11.78100 -11.60179 -11.59527 -11.32425 -10.86806 -10.74654 -10.33122 -10.15371 -9.37947 -8.27615 -6.31908 -0.44648 -0.12023 0.27014 0.77901 1.05089 1.39086 1.40853 1.52251 1.89889 2.28560 2.36453 2.38067 3.08260 3.10360 3.20238 3.46659 3.80457 3.97028 4.00280 4.02028 4.18718 4.40637 4.48622 4.71097 4.80336 4.83744 4.87526 4.96065 5.00909 5.02941 5.14512 5.47462 5.54571 5.56794 5.64504 5.68935 6.13305 6.28840 6.45802 6.75686 6.77261 7.32836 8.88820 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.001984 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.149009 B =14109.655396 C =14956.581452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.531 4.531 8 H 0.035 0.965 9 C -0.012 4.012 10 C -0.105 4.105 11 C 0.123 3.877 12 N -0.683 5.683 13 C 0.508 3.492 14 O -0.539 6.539 15 C 0.520 3.480 16 O -0.506 6.506 17 N -0.636 5.636 18 C 0.131 3.869 19 C -0.086 4.086 20 C -0.120 4.120 21 C 0.097 3.903 22 F -0.134 7.134 23 C -0.123 4.123 24 C -0.038 4.038 25 Cl -0.043 7.043 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.421 0.579 34 H 0.430 0.570 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.577 -19.343 0.057 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.050 4.050 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.335 5.335 13 C 0.288 3.712 14 O -0.417 6.417 15 C 0.303 3.697 16 O -0.381 6.381 17 N -0.283 5.283 18 C 0.035 3.965 19 C -0.106 4.106 20 C -0.140 4.140 21 C 0.076 3.924 22 F -0.112 7.112 23 C -0.142 4.142 24 C -0.067 4.067 25 Cl -0.014 7.014 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.258 0.742 34 H 0.271 0.729 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 27.472 -19.085 0.142 33.451 hybrid contribution -0.194 0.754 0.103 0.785 sum 27.278 -18.331 0.245 32.866 Atomic orbital electron populations 1.70071 1.08340 1.28113 1.52732 1.26036 0.95622 1.03625 0.94265 0.85663 0.79604 0.78229 0.79193 1.19211 1.21364 1.16645 1.21482 0.92093 0.93160 1.50209 0.94655 1.19468 0.93894 0.94420 0.97191 1.21523 0.91952 0.98408 1.02383 1.21594 0.94566 0.80816 1.02947 1.45856 1.06121 1.10878 1.70656 1.19825 0.83834 0.88744 0.78763 1.90788 1.55586 1.45824 1.49467 1.20158 0.82873 0.89690 0.77019 1.90779 1.55344 1.45415 1.46512 1.43055 1.07301 1.07921 1.70069 1.17616 0.94709 0.84930 0.99215 1.21227 1.00587 0.90720 0.98096 1.21409 0.95118 0.98093 0.99343 1.17557 0.95018 0.79051 1.00737 1.91538 1.88806 1.36335 1.94570 1.20988 1.02366 0.89137 1.01747 1.20485 0.95383 0.90571 1.00256 1.98417 1.74553 1.48305 1.80129 0.92580 0.95689 0.95729 0.91622 0.91780 0.90804 0.90561 0.74178 0.72930 0.82490 0.81365 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.95 43.20 27.47 68.60 1.88 45.08 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 7 C -0.53 -29.52 9.66 25.60 0.25 -29.27 16 8 H 0.04 2.15 7.99 -2.91 -0.02 2.13 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 11 C 0.12 3.43 5.67 86.38 0.49 3.92 16 12 N -0.68 -16.40 5.55 -464.51 -2.58 -18.97 16 13 C 0.51 12.28 7.89 87.23 0.69 12.97 16 14 O -0.54 -15.20 16.48 -3.26 -0.05 -15.26 16 15 C 0.52 10.95 7.73 87.23 0.67 11.62 16 16 O -0.51 -11.66 13.89 -3.36 -0.05 -11.70 16 17 N -0.64 -11.19 5.03 -304.72 -1.53 -12.72 16 18 C 0.13 2.13 6.30 38.20 0.24 2.37 16 19 C -0.09 -1.30 8.70 22.40 0.19 -1.11 16 20 C -0.12 -1.45 10.02 22.30 0.22 -1.23 16 21 C 0.10 1.24 7.30 22.39 0.16 1.40 16 22 F -0.13 -1.87 17.26 44.97 0.78 -1.10 16 23 C -0.12 -1.48 9.80 22.32 0.22 -1.26 16 24 C -0.04 -0.54 6.34 22.45 0.14 -0.40 16 25 Cl -0.04 -0.61 27.96 -2.72 -0.08 -0.68 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 28 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.42 9.03 7.94 -92.71 -0.74 8.30 16 34 H 0.43 6.94 7.56 -92.71 -0.70 6.24 16 35 H 0.16 2.53 6.20 -2.91 -0.02 2.51 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -66.46 343.98 2.36 -64.10 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.34 Total: 14.17 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.03 Total: -4.23 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -3.81 Total: -90.38 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.10 Total: -26.96 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.46 2.36 -64.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.462 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds