Wall clock time and date at job start Tue Mar 31 2020 15:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99420 * 2 1 4 4 H 1.48503 * 109.46882 * 239.99278 * 3 2 1 5 5 H 1.48493 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47169 * 119.99596 * 3 2 1 7 7 C 1.37871 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46857 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99764 * 179.97438 * 12 11 10 14 14 O 1.21360 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.49347 * 119.99865 * 180.02562 * 13 12 11 16 16 O 1.21380 * 120.00065 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99865 * 179.97438 * 15 13 12 18 18 C 1.39802 * 119.99882 * 185.27689 * 17 15 13 19 19 C 1.38937 * 120.04587 * 213.32833 * 18 17 15 20 20 C 1.38087 * 119.97498 * 180.02562 * 19 18 17 21 21 C 1.38477 * 120.06115 * 0.02562 * 20 19 18 22 22 F 1.35108 * 119.95441 * 180.27512 * 21 20 19 23 23 C 1.38581 * 120.09468 * 359.97438 * 21 20 19 24 24 Cl 1.73599 * 119.98921 * 180.02562 * 23 21 20 25 25 C 1.38217 * 120.02591 * 0.02562 * 23 21 20 26 26 H 0.96991 * 120.00486 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47106 * 59.99215 * 9 7 2 28 28 H 1.09007 * 109.46477 * 299.99499 * 9 7 2 29 29 H 1.08994 * 109.47048 * 59.99538 * 10 9 7 30 30 H 1.08999 * 109.46942 * 299.99826 * 10 9 7 31 31 H 1.08996 * 109.46864 * 59.99831 * 11 10 9 32 32 H 1.08993 * 109.47274 * 299.99524 * 11 10 9 33 33 H 0.96998 * 119.99843 * 0.02562 * 12 11 10 34 34 H 0.97005 * 120.00000 * 5.28337 * 17 15 13 35 35 H 1.08001 * 120.01519 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.97190 * 180.02562 * 20 19 18 37 37 H 1.07993 * 120.03442 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1938 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4807 -4.9870 0.0012 12 7 2.4328 -6.1005 0.0006 13 6 1.9836 -7.3712 0.0015 14 8 0.7905 -7.5930 0.0024 15 6 2.9542 -8.5063 0.0014 16 8 4.1475 -8.2844 0.0010 17 7 2.5050 -9.7770 0.0029 18 6 3.4088 -10.8377 0.1142 19 6 3.1535 -12.0401 -0.5334 20 6 4.0470 -13.0871 -0.4220 21 6 5.1971 -12.9399 0.3350 22 9 6.0726 -13.9638 0.4380 23 6 5.4545 -11.7417 0.9821 24 17 6.8976 -11.5600 1.9298 25 6 4.5628 -10.6914 0.8732 26 1 -0.4850 0.8399 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6243 -2.5567 0.8904 29 1 2.8723 -3.6041 0.8904 30 1 2.8722 -3.6041 -0.8895 31 1 0.8537 -5.0450 -0.8885 32 1 0.8544 -5.0446 0.8914 33 1 3.3864 -5.9231 0.0002 34 1 1.5546 -9.9555 -0.0734 35 1 2.2565 -12.1559 -1.1237 36 1 3.8486 -14.0215 -0.9257 37 1 4.7630 -9.7578 1.3777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171475196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:26 Heat of formation + Delta-G solvation = -123.511958 kcal Electronic energy + Delta-G solvation = -23610.365407 eV Core-core repulsion = 19520.022984 eV Total energy + Delta-G solvation = -4090.342423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02310 -42.27441 -40.60161 -39.33480 -37.75606 -37.22101 -35.98422 -35.15441 -33.06315 -32.15035 -30.67605 -28.94757 -26.49043 -24.87393 -24.36037 -23.12921 -22.37404 -21.45313 -19.96734 -19.03599 -18.70499 -18.42670 -17.85709 -17.50781 -17.12767 -16.84195 -16.58358 -16.31550 -16.15552 -15.94234 -15.20492 -15.16732 -14.87614 -14.48314 -14.30658 -14.24948 -14.14518 -13.78306 -13.52217 -13.05991 -12.99086 -12.73067 -12.58546 -12.53161 -12.43652 -12.11709 -11.68987 -11.57111 -11.46542 -11.24811 -10.83727 -10.53607 -10.33252 -10.11085 -9.34306 -8.18962 -6.29638 -0.41880 -0.10498 0.31065 0.83597 1.08915 1.42606 1.44684 1.52570 1.90948 2.33806 2.39308 2.45818 2.98580 3.14933 3.22548 3.54786 3.86347 3.90898 4.07851 4.16734 4.19383 4.46861 4.53399 4.74246 4.84802 4.90250 4.91458 4.92623 5.00932 5.15794 5.20785 5.51907 5.54240 5.71948 5.73889 5.85336 6.18253 6.24728 6.52875 6.78171 6.87310 7.39639 8.92495 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.001852 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.422792 B =15118.377741 C =16049.927159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.683 5.683 13 C 0.508 3.492 14 O -0.540 6.540 15 C 0.518 3.482 16 O -0.513 6.513 17 N -0.630 5.630 18 C 0.138 3.862 19 C -0.088 4.088 20 C -0.107 4.107 21 C 0.084 3.916 22 F -0.133 7.133 23 C -0.068 4.068 24 Cl -0.054 7.054 25 C -0.101 4.101 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.420 0.580 34 H 0.439 0.561 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 -30.181 -0.593 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.004 3.996 12 N -0.336 5.336 13 C 0.288 3.712 14 O -0.417 6.417 15 C 0.300 3.700 16 O -0.387 6.387 17 N -0.278 5.278 18 C 0.043 3.957 19 C -0.108 4.108 20 C -0.126 4.126 21 C 0.063 3.937 22 F -0.112 7.112 23 C -0.096 4.096 24 Cl -0.025 7.025 25 C -0.122 4.122 26 H 0.072 0.928 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.258 0.742 34 H 0.280 0.720 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.077 -30.000 -0.488 31.072 hybrid contribution 0.523 1.145 0.295 1.293 sum 8.600 -28.854 -0.193 30.109 Atomic orbital electron populations 1.70080 1.07732 1.27822 1.51589 1.25965 0.95759 1.03340 0.94868 0.85523 0.78243 0.78251 0.79158 1.19197 1.21126 1.19227 1.21654 0.93689 0.92181 1.50542 0.91826 1.18933 0.94361 0.92523 0.95491 1.21646 0.98646 0.91959 1.02243 1.21508 0.91496 0.84270 1.02288 1.45875 1.12432 1.04559 1.70691 1.19909 0.88193 0.84467 0.78658 1.90787 1.16621 1.84827 1.49513 1.20170 0.88307 0.84452 0.77108 1.90821 1.16580 1.84711 1.46576 1.43005 1.12077 1.02886 1.69850 1.17703 0.91382 0.88890 0.97680 1.21283 1.01764 0.89996 0.97791 1.21310 0.91011 1.01983 0.98279 1.17683 0.90881 0.83837 1.01316 1.91535 1.67928 1.56998 1.94707 1.20855 0.92406 0.95182 1.01172 1.98397 1.35824 1.97707 1.70580 1.20884 0.93786 0.98626 0.98901 0.92806 0.98435 0.98477 0.91493 0.91431 0.91371 0.91464 0.74226 0.72005 0.79884 0.79776 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.11 -3.90 5.27 30.60 0.16 -3.74 16 11 C 0.13 3.98 5.67 86.38 0.49 4.47 16 12 N -0.68 -17.59 5.55 -464.52 -2.58 -20.16 16 13 C 0.51 12.61 7.89 87.24 0.69 13.30 16 14 O -0.54 -15.52 16.48 -3.28 -0.05 -15.58 16 15 C 0.52 10.86 7.62 87.24 0.67 11.52 16 16 O -0.51 -12.69 14.16 -3.34 -0.05 -12.74 16 17 N -0.63 -9.34 5.33 -304.80 -1.62 -10.96 16 18 C 0.14 1.96 6.28 38.19 0.24 2.20 16 19 C -0.09 -0.69 9.96 22.40 0.22 -0.47 16 20 C -0.11 -0.90 10.02 22.29 0.22 -0.68 16 21 C 0.08 1.25 7.27 22.41 0.16 1.42 16 22 F -0.13 -2.26 16.83 44.97 0.76 -1.51 16 23 C -0.07 -1.23 6.32 22.35 0.14 -1.09 16 24 Cl -0.05 -1.06 28.61 -2.72 -0.08 -1.13 16 25 C -0.10 -1.86 8.44 22.42 0.19 -1.67 16 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.42 9.61 7.94 -92.71 -0.74 8.88 16 34 H 0.44 4.62 8.30 -92.70 -0.77 3.86 16 35 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 36 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.14 3.01 6.41 -2.91 -0.02 2.99 16 Total: -1.00 -68.29 349.05 2.36 -65.94 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -0.36 Total: 8.57 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.03 Total: -2.39 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.92 Total: -86.48 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.10 Total: -28.31 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.76 Total: -1.51 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.13 kcal Total: -68.29 2.36 -65.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.577 kcal (2) G-P(sol) polarization free energy of solvation -68.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds