Wall clock time and date at job start Tue Mar 31 2020 15:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47114 * 300.00087 * 3 2 1 6 6 H 1.48499 * 109.47238 * 59.99763 * 3 2 1 7 7 C 1.37879 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47248 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47246 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00298 * 180.02562 * 12 11 10 14 14 O 1.21365 * 119.99510 * 359.97438 * 13 12 11 15 15 C 1.49339 * 120.00356 * 179.97438 * 13 12 11 16 16 O 1.21385 * 119.99674 * 359.97438 * 15 13 12 17 17 N 1.34773 * 119.99899 * 180.27492 * 15 13 12 18 18 C 1.39863 * 119.99916 * 175.25684 * 17 15 13 19 19 C 1.38872 * 120.07269 * 34.65788 * 18 17 15 20 20 C 1.38114 * 119.96057 * 179.69800 * 19 18 17 21 21 C 1.38405 * 120.10385 * 0.60546 * 20 19 18 22 22 Cl 1.73596 * 119.92699 * 179.69819 * 21 20 19 23 23 C 1.38376 * 120.14735 * 359.67110 * 21 20 19 24 24 C 1.38299 * 120.03354 * 0.02562 * 23 21 20 25 25 F 1.35099 * 120.05045 * 179.97438 * 24 23 21 26 26 H 0.97000 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47265 * 59.99708 * 9 7 2 28 28 H 1.09003 * 109.47037 * 299.99758 * 9 7 2 29 29 H 1.08998 * 109.47408 * 59.99634 * 10 9 7 30 30 H 1.09004 * 109.47291 * 299.99481 * 10 9 7 31 31 H 1.08998 * 109.47411 * 59.99396 * 11 10 9 32 32 H 1.09003 * 109.46793 * 299.99506 * 11 10 9 33 33 H 0.97002 * 120.00241 * 359.97438 * 12 11 10 34 34 H 0.97001 * 120.00251 * 355.24815 * 17 15 13 35 35 H 1.08005 * 120.01821 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.94578 * 180.27314 * 20 19 18 37 37 H 1.07994 * 119.98255 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0030 13 6 1.9830 -7.3714 0.0023 14 8 0.7898 -7.5931 0.0006 15 6 2.9534 -8.5065 0.0036 16 8 4.1468 -8.2846 0.0049 17 7 2.5041 -9.7771 -0.0027 18 6 3.4096 -10.8385 -0.1016 19 6 4.6599 -10.7446 0.4954 20 6 5.5498 -11.7966 0.4015 21 6 5.2023 -12.9396 -0.2973 22 17 6.3275 -14.2559 -0.4190 23 6 3.9598 -13.0356 -0.8988 24 6 3.0617 -11.9883 -0.8032 25 9 1.8488 -12.0815 -1.3907 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6040 0.8922 30 1 2.8726 -3.6048 -0.8878 31 1 0.8545 -5.0450 -0.8894 32 1 0.8527 -5.0447 0.8906 33 1 3.3859 -5.9234 0.0040 34 1 1.5528 -9.9555 0.0615 35 1 4.9345 -9.8511 1.0366 36 1 6.5204 -11.7250 0.8697 37 1 3.6913 -13.9289 -1.4431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171475203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:22 Heat of formation + Delta-G solvation = -103.944943 kcal Electronic energy + Delta-G solvation = -23704.237415 eV Core-core repulsion = 19614.743481 eV Total energy + Delta-G solvation = -4089.493933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.47397 -41.35875 -39.71003 -38.56367 -37.04752 -35.98928 -35.11985 -33.40306 -31.41104 -31.30822 -30.15143 -27.35550 -25.31539 -23.90765 -23.20422 -22.25335 -20.91310 -20.38276 -19.14580 -18.23954 -17.85987 -17.06560 -16.69102 -16.47079 -16.15485 -16.05156 -15.76053 -15.29567 -14.94588 -14.60446 -14.48589 -14.08686 -14.00920 -13.80591 -13.60315 -12.93794 -12.58672 -12.36839 -12.10567 -11.95418 -11.89070 -11.82396 -11.50497 -10.96644 -10.83737 -10.78219 -10.61865 -9.99455 -9.97279 -9.54449 -9.47494 -9.17237 -9.13747 -8.73308 -8.42101 -6.06667 -4.09819 0.22494 0.50708 1.16885 1.49207 1.94510 2.77251 3.01812 3.27498 3.29497 3.35428 3.39100 3.55413 4.07728 4.22463 4.36325 4.41096 4.51378 4.81828 4.98905 5.29509 5.35675 5.42276 5.48599 5.54841 5.60138 5.65114 5.99234 6.10171 6.14592 6.45008 6.46083 6.64885 6.88170 7.10626 7.39547 7.57030 7.67811 7.82510 7.91602 8.32224 8.96839 9.54867 11.04569 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.001769 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.449356 B =15822.316712 C =16567.507800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.686 5.686 13 C 0.504 3.496 14 O -0.518 6.518 15 C 0.514 3.486 16 O -0.496 6.496 17 N -0.646 5.646 18 C 0.119 3.881 19 C -0.082 4.082 20 C -0.098 4.098 21 C -0.023 4.023 22 Cl -0.056 7.056 23 C -0.128 4.128 24 C 0.092 3.908 25 F -0.126 7.126 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.429 0.571 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -29.265 0.438 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.395 6.395 15 C 0.296 3.704 16 O -0.369 6.369 17 N -0.293 5.293 18 C 0.023 3.977 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.050 4.050 22 Cl -0.027 7.027 23 C -0.148 4.148 24 C 0.070 3.930 25 F -0.104 7.104 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.268 0.732 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.815 -29.149 0.392 30.760 hybrid contribution 0.212 0.762 -0.172 0.809 sum 10.027 -28.387 0.220 30.106 Atomic orbital electron populations 1.69974 1.06057 1.26651 1.50543 1.25033 0.94875 0.99368 0.95205 0.86513 0.80065 0.83658 0.77619 1.19726 1.20982 1.20988 1.21228 0.93090 0.90842 1.50973 0.92498 1.19041 0.93797 0.90779 0.97775 1.21938 0.99916 0.92840 1.01388 1.21915 0.91678 0.84522 1.02776 1.46073 1.12428 1.04752 1.70548 1.19617 0.88143 0.84263 0.79710 1.90806 1.15640 1.84470 1.48584 1.20624 0.89188 0.83920 0.76620 1.90767 1.16090 1.84405 1.45643 1.43059 1.11506 1.03735 1.71007 1.17826 0.92762 0.87700 0.99367 1.21261 0.91342 0.99742 0.97851 1.21080 1.00913 0.91020 0.98715 1.20638 0.91560 0.91178 1.01670 1.98397 1.60490 1.46796 1.96993 1.20816 0.92195 0.99377 1.02376 1.17222 0.82827 0.95260 0.97695 1.91552 1.40775 1.96414 1.81671 0.92944 0.96149 0.96153 0.92344 0.92364 0.90859 0.90843 0.75173 0.73229 0.82082 0.83514 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.59 5.46 -17.81 -0.10 1.49 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.11 1.81 5.67 -4.04 -0.02 1.78 16 12 N -0.69 -9.29 5.55 -60.76 -0.34 -9.63 16 13 C 0.50 6.79 7.89 -11.64 -0.09 6.70 16 14 O -0.52 -8.16 16.48 5.48 0.09 -8.07 16 15 C 0.51 5.96 7.73 -11.64 -0.09 5.87 16 16 O -0.50 -6.19 13.89 5.47 0.08 -6.11 16 17 N -0.65 -6.35 5.21 -10.24 -0.05 -6.40 16 18 C 0.12 1.10 6.31 -83.64 -0.53 0.57 16 19 C -0.08 -0.69 8.70 -39.39 -0.34 -1.03 16 20 C -0.10 -0.68 9.82 -39.57 -0.39 -1.06 16 21 C -0.02 -0.16 6.32 -39.47 -0.25 -0.41 16 22 Cl -0.06 -0.36 28.95 -51.86 -1.50 -1.86 16 23 C -0.13 -0.91 9.80 -39.51 -0.39 -1.30 16 24 C 0.09 0.78 7.31 -39.24 -0.29 0.50 16 25 F -0.13 -1.16 16.96 2.25 0.04 -1.12 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.41 4.95 7.94 -40.82 -0.32 4.62 16 34 H 0.43 3.82 8.14 -40.82 -0.33 3.49 16 35 H 0.16 1.41 6.19 -52.48 -0.33 1.09 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -30.59 348.84 -7.70 -38.29 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.91 Total: 2.45 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.08 Total: -3.43 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.35 Total: -41.57 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.17 Total: -14.18 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.59 -7.70 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171475203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.659 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds