Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47118 * 270.00085 * 3 2 1 5 5 H 1.48498 * 109.47702 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47255 * 150.00217 * 3 2 1 7 7 C 1.39926 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 197.88924 * 7 2 1 9 9 C 1.41435 * 120.00126 * 17.87965 * 7 2 1 10 10 C 1.40796 * 120.17757 * 204.49518 * 9 7 2 11 11 C 1.37715 * 120.03348 * 179.97438 * 10 9 7 12 12 C 1.38374 * 120.40982 * 359.78587 * 11 10 9 13 13 C 1.39882 * 120.35699 * 0.47244 * 12 11 10 14 14 C 1.47874 * 120.02238 * 179.78846 * 13 12 11 15 15 N 1.31948 * 126.56048 * 359.71857 * 14 13 12 16 16 C 1.34952 * 105.51253 * 179.97438 * 15 14 13 17 17 C 1.48409 * 126.32397 * 180.02562 * 16 15 14 18 18 C 1.39354 * 120.07843 * 0.27157 * 17 16 15 19 19 C 1.37978 * 119.94748 * 180.26157 * 18 17 16 20 20 C 1.38522 * 120.11990 * 359.73911 * 19 18 17 21 21 F 1.35096 * 119.91284 * 180.02562 * 20 19 18 22 22 C 1.38748 * 120.16792 * 0.02562 * 20 19 18 23 23 F 1.35103 * 119.97681 * 180.02562 * 22 20 19 24 24 C 1.38175 * 120.04850 * 359.97338 * 22 20 19 25 25 N 1.30859 * 107.36070 * 0.26204 * 16 15 14 26 26 O 1.21275 * 110.32547 * 359.54221 * 25 16 15 27 27 C 1.39015 * 119.95180 * 359.50548 * 13 12 11 28 28 H 0.97006 * 119.99911 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.98533 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.78799 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.81928 * 180.23654 * 12 11 10 32 32 H 1.07995 * 120.03140 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.93964 * 179.76351 * 19 18 17 34 34 H 1.08000 * 120.06175 * 180.02562 * 24 22 20 35 35 H 1.08000 * 120.20146 * 180.27363 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4398 2.6528 0.6999 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3521 -2.4069 -0.3771 10 6 1.8257 -3.6499 0.0844 11 6 1.1845 -4.8117 -0.2837 12 6 0.0708 -4.7675 -1.1036 13 6 -0.4110 -3.5422 -1.5762 14 6 -1.5990 -3.5039 -2.4558 15 7 -2.2979 -4.5402 -2.8783 16 6 -3.2793 -4.0243 -3.6477 17 6 -4.3349 -4.7897 -4.3565 18 6 -4.3771 -6.1790 -4.2557 19 6 -5.3564 -6.8883 -4.9203 20 6 -6.3011 -6.2216 -5.6832 21 9 -7.2584 -6.9202 -6.3316 22 6 -6.2665 -4.8381 -5.7830 23 9 -7.1900 -4.1918 -6.5277 24 6 -5.2889 -4.1209 -5.1204 25 7 -3.1254 -2.7248 -3.6575 26 8 -2.1729 -2.4083 -2.9767 27 6 0.2245 -2.3601 -1.2136 28 1 -0.4850 0.8401 -0.0004 29 1 2.6923 -3.6922 0.7275 30 1 1.5510 -5.7630 0.0730 31 1 -0.4270 -5.6842 -1.3833 32 1 -3.6417 -6.7004 -3.6611 33 1 -5.3868 -7.9652 -4.8451 34 1 -5.2620 -3.0440 -5.1976 35 1 -0.1467 -1.4116 -1.5726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171796747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = 19.803096 kcal Electronic energy + Delta-G solvation = -25350.531931 eV Core-core repulsion = 21145.376660 eV Total energy + Delta-G solvation = -4205.155271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.75833 -48.82794 -45.07763 -39.27557 -37.83255 -35.47455 -34.02002 -32.90786 -31.29035 -30.56051 -29.91036 -29.24053 -25.60374 -24.67193 -24.24894 -22.99377 -22.27127 -20.91632 -20.41663 -18.41205 -17.88735 -17.68554 -17.49841 -17.26182 -16.58955 -16.51257 -15.53746 -15.23619 -15.20938 -14.89303 -14.77076 -14.44507 -14.33354 -13.66900 -13.34735 -12.97421 -12.95255 -12.70943 -12.66628 -12.13170 -12.05677 -11.68168 -11.60483 -11.33900 -11.25717 -10.98532 -10.77722 -10.62395 -10.18494 -9.97354 -9.88016 -9.42844 -9.33950 -8.82994 -7.71617 -7.70391 -6.96757 -4.58250 0.23891 0.64901 1.21338 2.20630 2.63315 2.93222 2.99859 3.02478 3.10473 3.19609 3.30193 3.31786 3.57004 3.80314 3.95662 4.11467 4.39692 4.42496 4.61123 4.73849 5.11716 5.37479 5.40005 5.42815 5.48334 5.66944 5.91923 5.95778 6.04971 6.17666 6.28420 6.35153 6.55431 6.76870 6.84963 7.03059 7.14518 7.49891 7.63119 7.73656 7.92987 8.29804 8.43931 8.61254 8.64837 9.98380 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.002562 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.976858 B =10925.180450 C =12127.577872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.101 3.899 10 C -0.198 4.198 11 C -0.097 4.097 12 C -0.186 4.186 13 C -0.037 4.037 14 C 0.278 3.722 15 N -0.490 5.490 16 C 0.196 3.804 17 C 0.015 3.985 18 C -0.057 4.057 19 C -0.126 4.126 20 C 0.078 3.922 21 F -0.126 7.126 22 C 0.067 3.933 23 F -0.125 7.125 24 C -0.096 4.096 25 N -0.386 5.386 26 O 0.087 5.913 27 C -0.111 4.111 28 H 0.286 0.714 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -7.944 -7.073 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.102 0.898 9 C 0.098 3.902 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.207 4.207 13 C -0.039 4.039 14 C 0.064 3.936 15 N -0.223 5.223 16 C -0.074 4.074 17 C 0.013 3.987 18 C -0.077 4.077 19 C -0.145 4.145 20 C 0.057 3.943 21 F -0.105 7.105 22 C 0.047 3.953 23 F -0.104 7.104 24 C -0.116 4.116 25 N -0.094 5.094 26 O 0.027 5.973 27 C -0.133 4.133 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.527 -7.653 -7.601 13.749 hybrid contribution -0.010 0.909 -0.111 0.916 sum -8.536 -6.744 -7.712 13.335 Atomic orbital electron populations 1.69758 1.07636 1.29944 1.33946 1.25953 0.94792 1.01642 0.92047 0.86246 0.80447 0.80219 0.79544 1.19063 1.20173 1.18481 1.19605 0.98387 0.90881 1.39679 0.89791 1.17487 0.90906 0.92620 0.89164 1.21229 1.03157 0.92624 1.04782 1.20489 0.95673 0.97158 0.98192 1.20317 1.00250 0.94720 1.05444 1.17206 0.91059 0.96246 0.99429 1.26948 0.94847 0.78914 0.92897 1.72206 1.06524 1.28376 1.15208 1.23473 0.96959 0.87788 0.99191 1.17114 0.92346 0.92175 0.97038 1.21220 0.97409 0.92134 0.96967 1.21042 0.94206 1.01660 0.97571 1.17827 0.90459 0.88027 0.97969 1.91539 1.61329 1.78475 1.79152 1.17364 0.91497 0.88650 0.97787 1.91550 1.63571 1.81237 1.74034 1.21068 0.92748 1.01837 0.95971 1.74814 1.05221 1.15333 1.14057 1.85408 1.30719 1.35328 1.45877 1.21608 0.97809 0.95570 0.98296 0.90312 0.88100 0.88113 0.87583 0.82618 0.82791 0.82770 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.81 10.96 55.55 0.61 -18.21 16 2 C 0.07 1.72 5.14 -17.35 -0.09 1.63 16 3 Si 0.91 17.30 29.59 -169.99 -5.03 12.26 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.46 -10.91 9.05 -37.73 -0.34 -11.25 16 8 H 0.08 1.91 7.91 -52.49 -0.42 1.50 16 9 C 0.10 2.40 5.57 -106.87 -0.60 1.81 16 10 C -0.20 -4.25 9.78 -38.81 -0.38 -4.63 16 11 C -0.10 -1.90 10.01 -39.72 -0.40 -2.30 16 12 C -0.19 -3.76 9.71 -38.92 -0.38 -4.14 16 13 C -0.04 -0.79 5.87 -105.05 -0.62 -1.40 16 14 C 0.28 5.63 8.00 -13.79 -0.11 5.52 16 15 N -0.49 -9.09 10.93 -10.22 -0.11 -9.20 16 16 C 0.20 3.35 7.79 -156.28 -1.22 2.14 16 17 C 0.02 0.21 5.88 -104.89 -0.62 -0.41 16 18 C -0.06 -0.63 9.69 -39.26 -0.38 -1.01 16 19 C -0.13 -1.16 10.01 -39.57 -0.40 -1.55 16 20 C 0.08 0.84 7.31 -39.29 -0.29 0.55 16 21 F -0.13 -1.41 17.18 2.25 0.04 -1.37 16 22 C 0.07 0.79 7.30 -39.42 -0.29 0.50 16 23 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16 24 C -0.10 -1.18 9.67 -39.20 -0.38 -1.56 16 25 N -0.39 -7.17 11.84 31.20 0.37 -6.80 16 26 O 0.09 1.75 11.10 16.65 0.18 1.94 16 27 C -0.11 -2.61 8.37 -38.45 -0.32 -2.93 16 28 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.11 1.97 7.86 -52.49 -0.41 1.56 16 32 H 0.16 1.61 7.87 -52.49 -0.41 1.20 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.15 1.88 7.86 -52.49 -0.41 1.47 16 35 H 0.13 3.22 6.03 -52.49 -0.32 2.91 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -24.85 329.21 -8.11 -32.96 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -2.37 Total: 4.01 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -6.79 Total: -19.05 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.87 Total: -34.20 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.18 Total: 1.94 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -24.85 -8.11 -32.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171796747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.760 kcal (2) G-P(sol) polarization free energy of solvation -24.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds