Wall clock time and date at job start Tue Mar 31 2020 15:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47118 * 270.00085 * 3 2 1 5 5 H 1.48498 * 109.47702 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47255 * 150.00217 * 3 2 1 7 7 C 1.39926 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 197.88924 * 7 2 1 9 9 C 1.41435 * 120.00126 * 17.87965 * 7 2 1 10 10 C 1.40796 * 120.17757 * 204.49518 * 9 7 2 11 11 C 1.37715 * 120.03348 * 179.97438 * 10 9 7 12 12 C 1.38374 * 120.40982 * 359.78587 * 11 10 9 13 13 C 1.39882 * 120.35699 * 0.47244 * 12 11 10 14 14 C 1.47874 * 120.02238 * 179.78846 * 13 12 11 15 15 N 1.31948 * 126.56048 * 359.71857 * 14 13 12 16 16 C 1.34952 * 105.51253 * 179.97438 * 15 14 13 17 17 C 1.48409 * 126.32397 * 180.02562 * 16 15 14 18 18 C 1.39354 * 120.07843 * 0.27157 * 17 16 15 19 19 C 1.37978 * 119.94748 * 180.26157 * 18 17 16 20 20 C 1.38522 * 120.11990 * 359.73911 * 19 18 17 21 21 F 1.35096 * 119.91284 * 180.02562 * 20 19 18 22 22 C 1.38748 * 120.16792 * 0.02562 * 20 19 18 23 23 F 1.35103 * 119.97681 * 180.02562 * 22 20 19 24 24 C 1.38175 * 120.04850 * 359.97338 * 22 20 19 25 25 N 1.30859 * 107.36070 * 0.26204 * 16 15 14 26 26 O 1.21275 * 110.32547 * 359.54221 * 25 16 15 27 27 C 1.39015 * 119.95180 * 359.50548 * 13 12 11 28 28 H 0.97006 * 119.99911 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.98533 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.78799 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.81928 * 180.23654 * 12 11 10 32 32 H 1.07995 * 120.03140 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.93964 * 179.76351 * 19 18 17 34 34 H 1.08000 * 120.06175 * 180.02562 * 24 22 20 35 35 H 1.08000 * 120.20146 * 180.27363 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4398 2.6528 0.6999 6 1 3.5398 1.4402 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3521 -2.4069 -0.3771 10 6 1.8257 -3.6499 0.0844 11 6 1.1845 -4.8117 -0.2837 12 6 0.0708 -4.7675 -1.1036 13 6 -0.4110 -3.5422 -1.5762 14 6 -1.5990 -3.5039 -2.4558 15 7 -2.2979 -4.5402 -2.8783 16 6 -3.2793 -4.0243 -3.6477 17 6 -4.3349 -4.7897 -4.3565 18 6 -4.3771 -6.1790 -4.2557 19 6 -5.3564 -6.8883 -4.9203 20 6 -6.3011 -6.2216 -5.6832 21 9 -7.2584 -6.9202 -6.3316 22 6 -6.2665 -4.8381 -5.7830 23 9 -7.1900 -4.1918 -6.5277 24 6 -5.2889 -4.1209 -5.1204 25 7 -3.1254 -2.7248 -3.6575 26 8 -2.1729 -2.4083 -2.9767 27 6 0.2245 -2.3601 -1.2136 28 1 -0.4850 0.8401 -0.0004 29 1 2.6923 -3.6922 0.7275 30 1 1.5510 -5.7630 0.0730 31 1 -0.4270 -5.6842 -1.3833 32 1 -3.6417 -6.7004 -3.6611 33 1 -5.3868 -7.9652 -4.8451 34 1 -5.2620 -3.0440 -5.1976 35 1 -0.1467 -1.4116 -1.5726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171796747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:46 Heat of formation + Delta-G solvation = 9.192083 kcal Electronic energy + Delta-G solvation = -25350.992059 eV Core-core repulsion = 21145.376660 eV Total energy + Delta-G solvation = -4205.615399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.67113 -49.74421 -46.53664 -40.22534 -39.50276 -36.89760 -35.68453 -34.35796 -32.29739 -31.65401 -31.58455 -30.75630 -27.30785 -25.89411 -25.58573 -24.12485 -23.55639 -22.54667 -21.84824 -19.68098 -19.16350 -19.14402 -18.73023 -18.24960 -17.82390 -17.49927 -17.11292 -16.51048 -16.47510 -16.15005 -15.93876 -15.67759 -15.27587 -15.18690 -14.58178 -14.37942 -14.20737 -14.04769 -13.77595 -13.72278 -13.48406 -13.18434 -12.85833 -12.73925 -12.61531 -12.54581 -12.26284 -12.13568 -11.70467 -11.60209 -11.52246 -11.02693 -10.31341 -9.87224 -9.43280 -9.34274 -8.66748 -6.37185 -0.80533 -0.33000 -0.22549 0.87798 0.98598 1.40183 1.42873 1.54655 1.58518 1.68218 2.13898 2.21674 2.24989 2.58186 2.71065 2.77708 3.13913 3.39711 3.63779 3.64571 3.78766 3.99809 4.23261 4.44260 4.49379 4.57863 4.59035 4.67907 4.69608 4.84368 4.92224 5.07491 5.08117 5.17516 5.31529 5.45742 5.46339 5.81934 5.95010 6.02163 6.24449 6.55391 6.88333 6.89090 6.95720 8.30145 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.002562 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.976858 B =10925.180450 C =12127.577872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.490 4.490 8 H 0.086 0.914 9 C 0.073 3.927 10 C -0.202 4.202 11 C -0.092 4.092 12 C -0.178 4.178 13 C -0.042 4.042 14 C 0.265 3.735 15 N -0.483 5.483 16 C 0.210 3.790 17 C -0.011 4.011 18 C -0.046 4.046 19 C -0.104 4.104 20 C 0.086 3.914 21 F -0.126 7.126 22 C 0.059 3.941 23 F -0.131 7.131 24 C -0.094 4.094 25 N -0.401 5.401 26 O 0.064 5.936 27 C -0.138 4.138 28 H 0.289 0.711 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.167 0.833 33 H 0.194 0.806 34 H 0.149 0.851 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 -10.426 -7.393 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.519 4.519 8 H 0.104 0.896 9 C 0.070 3.930 10 C -0.223 4.223 11 C -0.110 4.110 12 C -0.199 4.199 13 C -0.044 4.044 14 C 0.050 3.950 15 N -0.216 5.216 16 C -0.061 4.061 17 C -0.013 4.013 18 C -0.066 4.066 19 C -0.122 4.122 20 C 0.065 3.935 21 F -0.104 7.104 22 C 0.039 3.961 23 F -0.110 7.110 24 C -0.115 4.115 25 N -0.112 5.112 26 O 0.009 5.991 27 C -0.159 4.159 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.184 0.816 33 H 0.211 0.789 34 H 0.167 0.833 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.834 -10.131 -7.909 15.596 hybrid contribution -0.053 1.440 -0.101 1.445 sum -8.888 -8.690 -8.010 14.788 Atomic orbital electron populations 1.69830 1.08983 1.30782 1.35239 1.26718 0.95390 1.04544 0.91257 0.85248 0.79287 0.76161 0.79397 1.19015 1.19730 1.17746 1.19850 0.98720 0.91912 1.41383 0.89598 1.17835 0.91522 0.93844 0.89766 1.21506 1.03592 0.92511 1.04663 1.20898 0.94807 0.98200 0.97059 1.20673 1.00048 0.94793 1.04341 1.17362 0.91323 0.96300 0.99450 1.26866 0.95109 0.79524 0.93464 1.72183 1.06562 1.27725 1.15159 1.24057 0.96706 0.87471 0.97855 1.17196 0.92385 0.93182 0.98563 1.21367 0.97771 0.90871 0.96584 1.21347 0.92215 1.03271 0.95392 1.17972 0.90447 0.87531 0.97539 1.91551 1.61390 1.78318 1.79133 1.17407 0.91429 0.89214 0.98066 1.91535 1.63741 1.81516 1.74215 1.20966 0.92809 1.01723 0.95967 1.74812 1.05294 1.16344 1.14797 1.85400 1.31409 1.35771 1.46546 1.21455 0.98992 0.95605 0.99877 0.90039 0.86698 0.84084 0.85415 0.81565 0.78930 0.83343 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.12 10.96 21.82 0.24 -40.88 16 2 C 0.04 1.73 5.14 85.25 0.44 2.17 16 3 Si 0.98 36.28 29.59 68.60 2.03 38.31 16 4 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.49 -24.16 9.05 23.47 0.21 -23.95 16 8 H 0.09 4.02 7.91 -2.91 -0.02 4.00 16 9 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 10 C -0.20 -8.60 9.78 22.77 0.22 -8.37 16 11 C -0.09 -3.40 10.01 22.18 0.22 -3.18 16 12 C -0.18 -6.89 9.71 22.70 0.22 -6.67 16 13 C -0.04 -1.82 5.87 -20.14 -0.12 -1.94 16 14 C 0.27 10.90 8.00 87.31 0.70 11.60 16 15 N -0.48 -17.53 10.93 -302.28 -3.30 -20.83 16 16 C 0.21 7.09 7.79 137.35 1.07 8.16 16 17 C -0.01 -0.29 5.88 -20.04 -0.12 -0.40 16 18 C -0.05 -0.87 9.69 22.48 0.22 -0.65 16 19 C -0.10 -1.48 10.01 22.28 0.22 -1.26 16 20 C 0.09 1.60 7.31 22.46 0.16 1.76 16 21 F -0.13 -2.41 17.18 44.97 0.77 -1.64 16 22 C 0.06 1.29 7.30 22.38 0.16 1.46 16 23 F -0.13 -3.13 17.18 44.97 0.77 -2.35 16 24 C -0.09 -2.25 9.67 22.51 0.22 -2.03 16 25 N -0.40 -15.23 11.84 -57.73 -0.68 -15.91 16 26 O 0.06 2.68 11.10 69.65 0.77 3.46 16 27 C -0.14 -6.73 8.37 23.00 0.19 -6.54 16 28 H 0.29 13.26 8.30 -92.70 -0.77 12.49 16 29 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.13 4.38 7.86 -2.91 -0.02 4.35 16 32 H 0.17 2.84 7.87 -2.91 -0.02 2.82 16 33 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.15 3.66 7.86 -2.91 -0.02 3.64 16 35 H 0.11 5.83 6.03 -2.91 -0.02 5.81 16 Total: -1.00 -55.49 329.21 5.68 -49.81 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.17 Total: 16.46 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.91 Total: -26.42 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -3.75 Total: -77.62 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.77 Total: 3.46 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.54 Total: -3.99 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -55.49 5.68 -49.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171796747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.000 kcal (2) G-P(sol) polarization free energy of solvation -55.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds