Wall clock time and date at job start Tue Mar 31 2020 15:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35236 * 107.86406 * 179.89664 * 11 10 9 13 13 C 1.40428 * 107.86894 * 0.36756 * 12 11 10 14 14 N 1.40086 * 125.97533 * 179.77227 * 13 12 11 15 15 C 1.34776 * 119.99992 * 359.97438 * 14 13 12 16 16 O 1.21607 * 120.00162 * 359.97438 * 15 14 13 17 17 C 1.47565 * 119.99553 * 180.02562 * 15 14 13 18 18 C 1.40199 * 120.12827 * 359.72070 * 17 15 14 19 19 C 1.35759 * 120.61372 * 179.73859 * 18 17 15 20 20 C 1.41248 * 120.63126 * 0.55856 * 19 18 17 21 21 N 1.34411 * 129.47581 * 179.71652 * 20 19 18 22 22 C 1.28059 * 117.91223 * 179.97438 * 21 20 19 23 23 S 1.70642 * 111.52136 * 0.02562 * 22 21 20 24 24 C 1.40145 * 118.74843 * 359.70318 * 20 19 18 25 25 C 1.38916 * 120.41282 * 0.02562 * 24 20 19 26 26 N 1.31231 * 108.04412 * 359.77068 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.07998 * 126.06640 * 0.03539 * 11 10 9 31 31 H 1.07997 * 126.06627 * 180.11379 * 12 11 10 32 32 H 0.97000 * 119.99732 * 179.97438 * 14 13 12 33 33 H 1.08002 * 119.69639 * 359.97438 * 18 17 15 34 34 H 1.07993 * 119.68291 * 180.23490 * 19 18 17 35 35 H 1.08006 * 124.23959 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.07638 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0529 -4.4048 -0.5786 13 6 4.2963 -4.6710 0.5741 14 7 4.2278 -5.8969 1.2485 15 6 4.9301 -6.9547 0.7967 16 8 5.6229 -6.8452 -0.1967 17 6 4.8574 -8.2462 1.5070 18 6 4.0633 -8.3741 2.6553 19 6 3.9851 -9.5590 3.3133 20 6 4.7113 -10.6828 2.8608 21 7 4.7693 -11.9248 3.3712 22 6 5.5083 -12.7841 2.7750 23 16 6.2779 -12.1081 1.4102 24 6 5.5093 -10.5534 1.7160 25 6 5.5818 -9.3404 1.0428 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2844 -2.6013 -1.7656 31 1 5.6838 -5.1082 -1.1015 32 1 3.6749 -5.9843 2.0407 33 1 3.5056 -7.5232 3.0176 34 1 3.3658 -9.6417 4.1941 35 1 5.6294 -13.8083 3.0958 36 1 6.1987 -9.2466 0.1614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172089168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:09 Heat of formation + Delta-G solvation = 120.415174 kcal Electronic energy + Delta-G solvation = -23183.541534 eV Core-core repulsion = 19568.882267 eV Total energy + Delta-G solvation = -3614.659266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15108 -40.60711 -39.39196 -36.95064 -34.99516 -33.35440 -31.65261 -31.50861 -30.40054 -29.44530 -27.27443 -25.90177 -24.02246 -22.86903 -22.46403 -21.46004 -20.39929 -19.79300 -18.98322 -17.55845 -17.18311 -16.86137 -16.35785 -16.22869 -15.48512 -15.38631 -15.03608 -14.74970 -14.39161 -14.37487 -14.06391 -13.65831 -13.41230 -13.01846 -12.93652 -12.58780 -12.40112 -12.32203 -12.05111 -11.33975 -11.20555 -10.91696 -10.65136 -10.57755 -10.21706 -10.14946 -10.03892 -9.80969 -9.56298 -9.23192 -8.78884 -8.60168 -8.25850 -7.59811 -6.25539 -4.28186 -0.31451 0.69686 0.75380 1.22843 1.53631 2.43688 2.58562 2.80794 3.14680 3.19532 3.22745 3.28608 3.49319 3.66880 3.71183 4.14178 4.20832 4.38266 4.52750 4.67851 4.73626 4.98390 5.02495 5.34726 5.37127 5.57746 5.63729 5.67441 5.76215 6.08045 6.10213 6.34212 6.39233 6.49207 6.60630 7.06756 7.20832 7.25091 7.47433 7.76167 8.06347 8.30385 8.49089 8.83801 9.29131 10.87060 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.002101 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.629808 B =13326.187728 C =13930.670926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.282 4.282 13 C 0.259 3.741 14 N -0.622 5.622 15 C 0.568 3.432 16 O -0.511 6.511 17 C -0.110 4.110 18 C -0.076 4.076 19 C -0.066 4.066 20 C 0.100 3.900 21 N -0.468 5.468 22 C 0.069 3.931 23 S 0.117 5.883 24 C -0.195 4.195 25 C -0.001 4.001 26 N -0.294 5.294 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.207 0.793 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 -23.259 4.509 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.005 3.995 14 N -0.270 5.270 15 C 0.354 3.646 16 O -0.386 6.386 17 C -0.117 4.117 18 C -0.098 4.098 19 C -0.087 4.087 20 C -0.021 4.021 21 N -0.180 5.180 22 C -0.235 4.235 23 S 0.372 5.628 24 C -0.313 4.313 25 C -0.024 4.024 26 N -0.125 5.125 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.249 0.751 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.223 0.777 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.094 -23.050 4.396 26.871 hybrid contribution -0.046 1.123 0.253 1.152 sum 13.048 -21.926 4.649 25.935 Atomic orbital electron populations 1.69871 1.06151 1.27326 1.49055 1.24837 0.94884 0.98816 0.94247 0.86887 0.80225 0.83804 0.79010 1.19692 1.18959 1.20580 1.21100 0.87738 0.95722 1.52776 0.89627 1.20078 0.97504 0.72890 0.98281 1.48642 1.32695 1.10179 1.18369 1.22569 0.95936 0.94646 0.96511 1.21550 1.11504 0.96844 1.01457 1.19039 0.99218 0.86430 0.94774 1.42263 1.47190 1.07351 1.30157 1.17879 0.79696 0.82831 0.84188 1.90740 1.39437 1.83435 1.24968 1.19704 1.00998 0.93571 0.97441 1.20906 0.97148 0.97976 0.93758 1.20297 0.98423 0.89444 1.00502 1.19431 0.98301 0.91779 0.92635 1.66219 1.19715 1.00911 1.31175 1.28269 0.95921 1.03753 0.95524 1.84138 1.47551 1.01191 1.29957 1.23755 1.05772 0.99605 1.02207 1.20406 0.95823 0.88188 0.97994 1.77402 1.23503 0.95478 1.16105 0.92152 0.92827 0.94390 0.81270 0.82017 0.75132 0.83928 0.83824 0.77683 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 19.93 27.47 -169.99 -4.67 15.26 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.26 -5.59 6.54 56.52 0.37 -5.23 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.91 9.79 -34.44 -0.34 -15.24 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 C 0.23 5.38 5.33 -5.20 -0.03 5.36 16 10 N -0.32 -7.03 3.67 -62.56 -0.23 -7.26 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 12 C -0.28 -5.32 9.60 -39.83 -0.38 -5.71 16 13 C 0.26 5.00 8.11 -154.44 -1.25 3.75 16 14 N -0.62 -9.28 5.40 -12.07 -0.07 -9.35 16 15 C 0.57 7.98 7.73 -12.46 -0.10 7.89 16 16 O -0.51 -8.49 13.46 5.27 0.07 -8.42 16 17 C -0.11 -1.21 5.87 -105.00 -0.62 -1.82 16 18 C -0.08 -0.68 9.44 -39.73 -0.38 -1.05 16 19 C -0.07 -0.58 10.03 -39.33 -0.39 -0.98 16 20 C 0.10 1.02 7.00 -84.88 -0.59 0.42 16 21 N -0.47 -4.51 10.56 -12.83 -0.14 -4.65 16 22 C 0.07 0.45 12.11 51.19 0.62 1.07 16 23 S 0.12 0.80 23.17 -107.50 -2.49 -1.69 16 24 C -0.19 -1.89 6.54 -38.62 -0.25 -2.14 16 25 C 0.00 -0.01 9.62 -38.98 -0.37 -0.39 16 26 N -0.29 -6.57 12.42 31.43 0.39 -6.18 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 29 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 30 H 0.17 2.50 8.06 -52.49 -0.42 2.07 16 31 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 32 H 0.41 4.93 6.84 -40.82 -0.28 4.65 16 33 H 0.14 0.95 6.38 -52.49 -0.33 0.61 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 36 H 0.15 1.47 7.64 -52.49 -0.40 1.07 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -34.83 330.92 -8.69 -43.52 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -2.95 Total: 5.37 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -4.38 Total: -6.03 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.73 Total: -52.99 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.83 -8.69 -43.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172089168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.936 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds