Wall clock time and date at job start Tue Mar 31 2020 15:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35236 * 107.86406 * 179.89664 * 11 10 9 13 13 C 1.40428 * 107.86894 * 0.36756 * 12 11 10 14 14 N 1.40086 * 125.97533 * 179.77227 * 13 12 11 15 15 C 1.34776 * 119.99992 * 359.97438 * 14 13 12 16 16 O 1.21607 * 120.00162 * 359.97438 * 15 14 13 17 17 C 1.47565 * 119.99553 * 180.02562 * 15 14 13 18 18 C 1.40199 * 120.12827 * 359.72070 * 17 15 14 19 19 C 1.35759 * 120.61372 * 179.73859 * 18 17 15 20 20 C 1.41248 * 120.63126 * 0.55856 * 19 18 17 21 21 N 1.34411 * 129.47581 * 179.71652 * 20 19 18 22 22 C 1.28059 * 117.91223 * 179.97438 * 21 20 19 23 23 S 1.70642 * 111.52136 * 0.02562 * 22 21 20 24 24 C 1.40145 * 118.74843 * 359.70318 * 20 19 18 25 25 C 1.38916 * 120.41282 * 0.02562 * 24 20 19 26 26 N 1.31231 * 108.04412 * 359.77068 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.07998 * 126.06640 * 0.03539 * 11 10 9 31 31 H 1.07997 * 126.06627 * 180.11379 * 12 11 10 32 32 H 0.97000 * 119.99732 * 179.97438 * 14 13 12 33 33 H 1.08002 * 119.69639 * 359.97438 * 18 17 15 34 34 H 1.07993 * 119.68291 * 180.23490 * 19 18 17 35 35 H 1.08006 * 124.23959 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.07638 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0529 -4.4048 -0.5786 13 6 4.2963 -4.6710 0.5741 14 7 4.2278 -5.8969 1.2485 15 6 4.9301 -6.9547 0.7967 16 8 5.6229 -6.8452 -0.1967 17 6 4.8574 -8.2462 1.5070 18 6 4.0633 -8.3741 2.6553 19 6 3.9851 -9.5590 3.3133 20 6 4.7113 -10.6828 2.8608 21 7 4.7693 -11.9248 3.3712 22 6 5.5083 -12.7841 2.7750 23 16 6.2779 -12.1081 1.4102 24 6 5.5093 -10.5534 1.7160 25 6 5.5818 -9.3404 1.0428 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2844 -2.6013 -1.7656 31 1 5.6838 -5.1082 -1.1015 32 1 3.6749 -5.9843 2.0407 33 1 3.5056 -7.5232 3.0176 34 1 3.3658 -9.6417 4.1941 35 1 5.6294 -13.8083 3.0958 36 1 6.1987 -9.2466 0.1614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172089168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:08 Heat of formation + Delta-G solvation = 96.676935 kcal Electronic energy + Delta-G solvation = -23184.570901 eV Core-core repulsion = 19568.882267 eV Total energy + Delta-G solvation = -3615.688633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35748 -41.61836 -40.51787 -37.72687 -36.37024 -35.23831 -33.23475 -32.34319 -31.38165 -30.92885 -28.99078 -26.70342 -25.10967 -24.15748 -23.53204 -22.58520 -21.81047 -21.06238 -19.79883 -19.10424 -18.56668 -18.16488 -17.39612 -17.15978 -16.66406 -16.64847 -16.17933 -15.86882 -15.72911 -15.28011 -15.09001 -14.82147 -14.66993 -14.46103 -14.07775 -13.91703 -13.80013 -13.54476 -13.06592 -12.91500 -12.65069 -12.19873 -11.99961 -11.82288 -11.69888 -11.48832 -11.30998 -11.10120 -10.87089 -10.75753 -9.97012 -9.78771 -9.26613 -9.11330 -8.36841 -6.47219 -1.02965 -0.01511 0.14670 0.63328 0.69740 1.12784 1.26895 1.38738 1.40609 1.49834 1.63399 2.17150 2.26935 2.29543 2.63214 2.92817 2.95809 3.37444 3.45837 3.86135 3.92242 4.01895 4.07977 4.19887 4.36250 4.59076 4.66756 4.71357 4.84228 4.88670 4.89912 4.96900 5.00567 5.14567 5.24919 5.40945 5.83443 5.99832 6.14435 6.40122 6.45449 6.58638 6.86975 7.00822 7.15665 8.80075 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.002101 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.629808 B =13326.187728 C =13930.670926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.229 1.229 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.027 0.973 9 C 0.238 3.762 10 N -0.343 5.343 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.264 3.736 14 N -0.618 5.618 15 C 0.572 3.428 16 O -0.539 6.539 17 C -0.126 4.126 18 C -0.070 4.070 19 C -0.071 4.071 20 C 0.093 3.907 21 N -0.500 5.500 22 C 0.084 3.916 23 S 0.154 5.846 24 C -0.220 4.220 25 C 0.000 4.000 26 N -0.344 5.344 27 H 0.272 0.728 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.212 0.788 31 H 0.170 0.830 32 H 0.424 0.576 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.247 0.753 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.471 -23.994 4.596 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.152 1.152 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.045 0.955 9 C 0.119 3.881 10 N -0.124 5.124 11 C -0.085 4.085 12 C -0.325 4.325 13 C 0.010 3.990 14 N -0.268 5.268 15 C 0.361 3.639 16 O -0.416 6.416 17 C -0.133 4.133 18 C -0.092 4.092 19 C -0.092 4.092 20 C -0.029 4.029 21 N -0.214 5.214 22 C -0.219 4.219 23 S 0.409 5.591 24 C -0.339 4.339 25 C -0.023 4.023 26 N -0.175 5.175 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.228 0.772 31 H 0.187 0.813 32 H 0.263 0.737 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.263 0.737 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.380 -23.838 4.487 28.721 hybrid contribution -0.733 1.011 0.233 1.270 sum 14.647 -22.827 4.720 27.529 Atomic orbital electron populations 1.70050 1.08575 1.28786 1.50671 1.25930 0.95784 1.03564 0.93272 0.85617 0.79908 0.77231 0.79610 1.19060 1.15152 1.20452 1.21229 0.90505 0.93720 1.52985 0.95501 1.19921 0.94149 0.74291 0.99767 1.48535 1.34263 1.10003 1.19646 1.23263 0.94279 0.94632 0.96371 1.21778 1.11840 0.97284 1.01557 1.19403 0.97827 0.87009 0.94800 1.42372 1.47678 1.06249 1.30460 1.18344 0.78507 0.83299 0.83746 1.90704 1.40586 1.83961 1.26311 1.19457 1.03131 0.92118 0.98601 1.21047 0.96519 0.98760 0.92831 1.20528 0.98555 0.89082 1.01046 1.19772 0.98076 0.92466 0.92635 1.66300 1.21609 1.01081 1.32383 1.29039 0.93671 1.04817 0.94402 1.84047 1.46452 0.99029 1.29532 1.23961 1.06765 1.00680 1.02520 1.20430 0.95468 0.88486 0.97912 1.77319 1.25660 0.96687 1.17804 0.91906 0.89822 0.93641 0.77150 0.81257 0.73725 0.82137 0.82048 0.73714 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.96 40.36 27.47 68.60 1.88 42.25 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.23 -8.29 6.54 99.48 0.65 -7.64 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.26 9.79 25.60 0.25 -31.01 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 9 C 0.24 10.87 5.33 85.63 0.46 11.32 16 10 N -0.34 -15.12 3.67 -351.85 -1.29 -16.41 16 11 C 0.06 2.26 11.43 83.52 0.95 3.22 16 12 C -0.29 -10.96 9.60 22.11 0.21 -10.75 16 13 C 0.26 10.35 8.11 133.35 1.08 11.44 16 14 N -0.62 -18.72 5.40 -310.34 -1.67 -20.40 16 15 C 0.57 16.26 7.73 86.70 0.67 16.93 16 16 O -0.54 -18.09 13.46 -4.05 -0.05 -18.14 16 17 C -0.13 -2.76 5.87 -20.11 -0.12 -2.88 16 18 C -0.07 -1.20 9.44 22.17 0.21 -0.99 16 19 C -0.07 -1.20 10.03 22.43 0.23 -0.97 16 20 C 0.09 1.78 7.00 39.95 0.28 2.06 16 21 N -0.50 -8.71 10.56 -194.44 -2.05 -10.76 16 22 C 0.08 0.86 12.11 130.79 1.58 2.45 16 23 S 0.15 1.80 23.17 -56.49 -1.31 0.49 16 24 C -0.22 -4.07 6.54 22.90 0.15 -3.92 16 25 C 0.00 0.00 9.62 22.66 0.22 0.21 16 26 N -0.34 -15.74 12.42 -54.48 -0.68 -16.42 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.08 3.30 7.12 -2.39 -0.02 3.29 16 29 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 30 H 0.21 5.53 8.06 -2.91 -0.02 5.51 16 31 H 0.17 6.05 5.91 -2.91 -0.02 6.03 16 32 H 0.42 10.33 6.84 -92.71 -0.63 9.69 16 33 H 0.16 2.02 6.38 -2.91 -0.02 2.00 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.25 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.15 2.95 7.64 -2.91 -0.02 2.93 16 Total: -1.00 -79.64 330.92 2.23 -77.41 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.47 Total: 21.22 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.64 Total: -1.70 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.40 Total: -121.52 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.05 Total: -18.14 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.88 Total: 42.25 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.31 Total: 0.49 kcal Total: -79.64 2.23 -77.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172089168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.088 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds