Wall clock time and date at job start Tue Mar 31 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47283 * 274.75423 * 3 2 1 5 5 H 1.48502 * 109.47120 * 34.75139 * 3 2 1 6 6 H 1.48498 * 109.47547 * 154.75125 * 3 2 1 7 7 C 1.37881 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99672 * 354.58789 * 7 2 1 9 9 C 1.50700 * 120.00075 * 174.86632 * 7 2 1 10 10 C 1.53007 * 115.54693 * 98.36658 * 9 7 2 11 11 O 1.45204 * 109.47222 * 305.20485 * 10 9 7 12 12 C 1.34232 * 116.99817 * 184.78980 * 11 10 9 13 13 O 1.20819 * 120.00057 * 5.12977 * 12 11 10 14 14 C 1.50700 * 119.99491 * 185.13015 * 12 11 10 15 15 S 1.81404 * 109.46893 * 185.20394 * 14 12 11 16 16 C 1.76197 * 103.00106 * 179.97438 * 15 14 12 17 17 C 1.38956 * 120.04370 * 179.97438 * 16 15 14 18 18 C 1.38119 * 119.98965 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.07750 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.95560 * 179.97438 * 19 18 17 21 21 C 1.38680 * 120.08825 * 0.02562 * 19 18 17 22 22 F 1.35099 * 119.99246 * 180.02562 * 21 19 18 23 23 C 1.38309 * 120.01300 * 359.74597 * 21 19 18 24 24 C 1.52995 * 117.49844 * 312.66212 * 9 7 2 25 25 C 1.52986 * 117.50192 * 244.03471 * 9 7 2 26 26 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47351 * 65.20671 * 10 9 7 28 28 H 1.08999 * 109.47202 * 185.20538 * 10 9 7 29 29 H 1.09002 * 109.47377 * 305.19720 * 14 12 11 30 30 H 1.08993 * 109.47584 * 65.20330 * 14 12 11 31 31 H 1.08001 * 120.00649 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.95923 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.04325 * 180.28382 * 23 21 19 34 34 H 1.08994 * 117.50119 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49958 * 145.01720 * 24 9 7 36 36 H 1.09005 * 117.50596 * 214.97716 * 25 9 7 37 37 H 1.09001 * 117.50228 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3962 2.1044 -1.3952 5 1 1.5005 2.6215 0.7981 6 1 3.5933 1.4132 0.5972 7 6 2.0045 -1.1941 -0.0005 8 1 1.4680 -2.1273 0.0873 9 6 3.5069 -1.1967 -0.1173 10 6 4.2710 -1.3381 1.2008 11 8 3.8397 -0.3033 2.1236 12 6 4.4863 -0.2254 3.2973 13 8 5.4421 -0.9336 3.5086 14 6 4.0201 0.7455 4.3514 15 16 5.1783 0.7245 5.7474 16 6 4.4809 1.9006 6.8587 17 6 5.1034 2.1650 8.0726 18 6 4.5561 3.0875 8.9427 19 6 3.3873 3.7492 8.6072 20 9 2.8537 4.6506 9.4603 21 6 2.7627 3.4870 7.3970 22 9 1.6224 4.1342 7.0714 23 6 3.3102 2.5674 6.5209 24 6 4.1323 -0.3234 -1.2068 25 6 4.1177 -1.8455 -1.3609 26 1 -0.4850 0.8400 0.0004 27 1 4.0701 -2.3179 1.6339 28 1 5.3399 -1.2357 1.0139 29 1 3.9792 1.7492 3.9283 30 1 3.0280 0.4567 4.6981 31 1 6.0151 1.6492 8.3357 32 1 5.0405 3.2929 9.8858 33 1 2.8267 2.3663 5.5764 34 1 3.4571 0.2527 -1.8393 35 1 5.0883 0.1509 -0.9846 36 1 5.0642 -2.3727 -1.2403 37 1 3.4329 -2.2709 -2.0945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174735748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:32 Heat of formation + Delta-G solvation = -111.567308 kcal Electronic energy + Delta-G solvation = -24488.096394 eV Core-core repulsion = 20380.395675 eV Total energy + Delta-G solvation = -4107.700719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.75641 -48.82817 -40.12537 -39.12812 -37.30331 -35.63871 -32.13695 -31.94064 -30.76702 -30.44303 -27.12782 -25.36109 -23.77306 -23.41426 -21.91999 -21.01548 -19.24138 -18.83480 -17.91429 -17.61743 -17.35531 -16.82399 -16.61938 -16.41912 -16.12721 -15.61191 -15.23674 -15.04318 -14.88153 -14.58428 -14.39411 -14.12406 -13.89841 -13.31771 -13.02557 -12.78391 -12.76679 -12.64216 -12.30555 -12.16067 -11.72767 -11.26530 -11.02324 -10.66730 -10.55120 -10.42953 -10.28485 -10.11233 -9.99576 -9.54314 -9.43037 -9.21001 -8.62958 -8.59041 -7.76264 -6.16116 -4.21083 0.39076 0.54522 0.82575 1.86910 2.30873 2.84280 2.92930 3.28436 3.38521 3.44819 3.49288 3.97927 4.11841 4.41898 4.47324 4.57941 4.63561 4.68453 4.92739 4.97998 5.06625 5.12523 5.32820 5.39502 5.50125 5.54544 5.60636 5.78878 5.87238 6.00838 6.17802 6.26975 6.33192 6.54305 6.68387 6.93408 6.98802 7.62651 7.97781 8.39342 8.84407 9.47596 10.94927 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003213 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.343651 B = 8712.539556 C = 9988.033984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.085 3.915 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.491 4.491 8 H 0.079 0.921 9 C -0.005 4.005 10 C 0.111 3.889 11 O -0.313 6.313 12 C 0.475 3.525 13 O -0.506 6.506 14 C -0.137 4.137 15 S -0.004 6.004 16 C -0.082 4.082 17 C -0.082 4.082 18 C -0.104 4.104 19 C 0.056 3.944 20 F -0.129 7.129 21 C 0.094 3.906 22 F -0.124 7.124 23 C -0.148 4.148 24 C -0.201 4.201 25 C -0.167 4.167 26 H 0.265 0.735 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 5.892 15.608 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.118 4.118 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.167 1.167 7 C -0.528 4.528 8 H 0.097 0.903 9 C -0.006 4.006 10 C 0.037 3.963 11 O -0.228 6.228 12 C 0.316 3.684 13 O -0.396 6.396 14 C -0.285 4.285 15 S 0.242 5.758 16 C -0.196 4.196 17 C -0.106 4.106 18 C -0.124 4.124 19 C 0.033 3.967 20 F -0.107 7.107 21 C 0.072 3.928 22 F -0.102 7.102 23 C -0.173 4.173 24 C -0.238 4.238 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.539 5.074 15.603 20.059 hybrid contribution -1.237 2.020 -0.142 2.373 sum 10.302 7.094 15.462 19.888 Atomic orbital electron populations 1.69903 1.06527 1.27257 1.49558 1.24963 0.94488 0.99152 0.93203 0.86834 0.81582 0.82849 0.77615 1.21333 1.22537 1.16701 1.20146 0.86103 0.94768 1.51787 0.90349 1.19376 0.95867 1.00781 0.84546 1.22930 0.96486 0.88040 0.88841 1.86730 1.57983 1.53461 1.24587 1.22216 0.81222 0.81863 0.83097 1.90662 1.26808 1.42704 1.79397 1.23545 1.04538 1.04309 0.96155 1.86174 1.31410 1.46564 1.11691 1.22007 0.97538 1.00709 0.99313 1.20649 1.00487 0.97919 0.91555 1.21008 0.93956 0.96244 1.01220 1.17651 0.95945 0.94411 0.88735 1.91534 1.85685 1.64737 1.68765 1.17517 0.85258 0.96076 0.93925 1.91568 1.46690 1.79436 1.92506 1.21185 0.96967 0.98042 1.01122 1.23008 1.01342 0.93587 1.05890 1.22909 1.01014 0.94590 1.01972 0.92538 0.91268 0.92998 0.85293 0.84676 0.83474 0.83055 0.83307 0.89129 0.90587 0.90661 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.96 55.43 0.77 -25.65 16 2 C 0.09 2.35 5.46 -17.82 -0.10 2.25 16 3 Si 0.88 21.05 23.62 -169.99 -4.01 17.03 16 4 H -0.29 -6.81 6.99 56.52 0.39 -6.41 16 5 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.24 -5.42 5.30 56.52 0.30 -5.12 16 7 C -0.49 -13.13 9.22 -34.44 -0.32 -13.45 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.00 -0.10 1.39 -155.67 -0.22 -0.32 16 10 C 0.11 2.22 5.45 37.16 0.20 2.42 16 11 O -0.31 -6.32 7.44 -39.26 -0.29 -6.61 16 12 C 0.47 8.14 7.96 36.01 0.29 8.42 16 13 O -0.51 -9.36 15.54 -18.74 -0.29 -9.65 16 14 C -0.14 -1.77 4.93 36.01 0.18 -1.59 16 15 S 0.00 -0.04 21.07 -107.50 -2.26 -2.31 16 16 C -0.08 -0.82 6.11 -39.07 -0.24 -1.05 16 17 C -0.08 -0.65 9.79 -39.36 -0.39 -1.04 16 18 C -0.10 -0.79 10.02 -39.55 -0.40 -1.19 16 19 C 0.06 0.56 7.30 -39.35 -0.29 0.28 16 20 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 21 C 0.09 1.06 7.30 -39.39 -0.29 0.77 16 22 F -0.12 -1.58 17.18 2.25 0.04 -1.54 16 23 C -0.15 -1.56 9.34 -39.31 -0.37 -1.93 16 24 C -0.20 -4.11 7.15 -26.73 -0.19 -4.30 16 25 C -0.17 -3.19 9.95 -26.74 -0.27 -3.46 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 0.96 7.92 -51.93 -0.41 0.54 16 29 H 0.13 1.47 7.74 -51.92 -0.40 1.07 16 30 H 0.14 1.54 7.76 -51.93 -0.40 1.13 16 31 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.15 1.49 5.87 -52.49 -0.31 1.18 16 34 H 0.09 1.97 6.16 -51.93 -0.32 1.65 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.81 337.24 -7.36 -38.17 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.05 Total: 1.04 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.38 Total: -14.18 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.65 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.58 Total: -16.26 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.01 Total: 17.03 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.26 Total: -2.31 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.81 -7.36 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.397 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds