Wall clock time and date at job start Tue Mar 31 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47283 * 274.75423 * 3 2 1 5 5 H 1.48502 * 109.47120 * 34.75139 * 3 2 1 6 6 H 1.48498 * 109.47547 * 154.75125 * 3 2 1 7 7 C 1.37881 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99672 * 354.58789 * 7 2 1 9 9 C 1.50700 * 120.00075 * 174.86632 * 7 2 1 10 10 C 1.53007 * 115.54693 * 98.36658 * 9 7 2 11 11 O 1.45204 * 109.47222 * 305.20485 * 10 9 7 12 12 C 1.34232 * 116.99817 * 184.78980 * 11 10 9 13 13 O 1.20819 * 120.00057 * 5.12977 * 12 11 10 14 14 C 1.50700 * 119.99491 * 185.13015 * 12 11 10 15 15 S 1.81404 * 109.46893 * 185.20394 * 14 12 11 16 16 C 1.76197 * 103.00106 * 179.97438 * 15 14 12 17 17 C 1.38956 * 120.04370 * 179.97438 * 16 15 14 18 18 C 1.38119 * 119.98965 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.07750 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.95560 * 179.97438 * 19 18 17 21 21 C 1.38680 * 120.08825 * 0.02562 * 19 18 17 22 22 F 1.35099 * 119.99246 * 180.02562 * 21 19 18 23 23 C 1.38309 * 120.01300 * 359.74597 * 21 19 18 24 24 C 1.52995 * 117.49844 * 312.66212 * 9 7 2 25 25 C 1.52986 * 117.50192 * 244.03471 * 9 7 2 26 26 H 0.97002 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47351 * 65.20671 * 10 9 7 28 28 H 1.08999 * 109.47202 * 185.20538 * 10 9 7 29 29 H 1.09002 * 109.47377 * 305.19720 * 14 12 11 30 30 H 1.08993 * 109.47584 * 65.20330 * 14 12 11 31 31 H 1.08001 * 120.00649 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.95923 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.04325 * 180.28382 * 23 21 19 34 34 H 1.08994 * 117.50119 * 359.97438 * 24 9 7 35 35 H 1.09003 * 117.49958 * 145.01720 * 24 9 7 36 36 H 1.09005 * 117.50596 * 214.97716 * 25 9 7 37 37 H 1.09001 * 117.50228 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3962 2.1044 -1.3952 5 1 1.5005 2.6215 0.7981 6 1 3.5933 1.4132 0.5972 7 6 2.0045 -1.1941 -0.0005 8 1 1.4680 -2.1273 0.0873 9 6 3.5069 -1.1967 -0.1173 10 6 4.2710 -1.3381 1.2008 11 8 3.8397 -0.3033 2.1236 12 6 4.4863 -0.2254 3.2973 13 8 5.4421 -0.9336 3.5086 14 6 4.0201 0.7455 4.3514 15 16 5.1783 0.7245 5.7474 16 6 4.4809 1.9006 6.8587 17 6 5.1034 2.1650 8.0726 18 6 4.5561 3.0875 8.9427 19 6 3.3873 3.7492 8.6072 20 9 2.8537 4.6506 9.4603 21 6 2.7627 3.4870 7.3970 22 9 1.6224 4.1342 7.0714 23 6 3.3102 2.5674 6.5209 24 6 4.1323 -0.3234 -1.2068 25 6 4.1177 -1.8455 -1.3609 26 1 -0.4850 0.8400 0.0004 27 1 4.0701 -2.3179 1.6339 28 1 5.3399 -1.2357 1.0139 29 1 3.9792 1.7492 3.9283 30 1 3.0280 0.4567 4.6981 31 1 6.0151 1.6492 8.3357 32 1 5.0405 3.2929 9.8858 33 1 2.8267 2.3663 5.5764 34 1 3.4571 0.2527 -1.8393 35 1 5.0883 0.1509 -0.9846 36 1 5.0642 -2.3727 -1.2403 37 1 3.4329 -2.2709 -2.0945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174735748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:32 Heat of formation + Delta-G solvation = -127.815829 kcal Electronic energy + Delta-G solvation = -24488.800983 eV Core-core repulsion = 20380.395675 eV Total energy + Delta-G solvation = -4108.405308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.60059 -49.67666 -41.53004 -39.85342 -38.90194 -37.13859 -34.22227 -32.77251 -31.51498 -31.44706 -28.71182 -27.31091 -24.50643 -24.21019 -23.47429 -22.32343 -21.01811 -19.71648 -18.85990 -18.74575 -18.56885 -18.20514 -17.68453 -17.44057 -17.35452 -16.93082 -16.59622 -16.09963 -15.90774 -15.62586 -15.41900 -15.27172 -15.03438 -14.74847 -14.46256 -14.09416 -13.91324 -13.70955 -13.50361 -13.43902 -13.05677 -12.87464 -12.46010 -12.13664 -12.04955 -11.80856 -11.69459 -11.55628 -11.44670 -10.94513 -10.75660 -10.65635 -10.30624 -10.18395 -8.60246 -8.28423 -6.36786 -0.35637 -0.16874 -0.09739 0.96910 1.01802 1.32903 1.41385 1.60909 1.76384 2.13411 2.42456 2.70782 3.03826 3.13001 3.19382 3.44531 3.55621 3.72046 3.80165 3.89437 3.98805 4.04845 4.19686 4.29668 4.34600 4.39907 4.57832 4.61698 4.74494 4.80369 4.87822 4.92447 4.97673 5.13247 5.40492 5.50789 5.54825 5.68348 6.25768 6.57761 6.72450 7.35608 8.86523 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.003213 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.343651 B = 8712.539556 C = 9988.033984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.032 3.968 3 Si 0.939 3.061 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.215 1.215 7 C -0.490 4.490 8 H 0.033 0.967 9 C -0.035 4.035 10 C 0.115 3.885 11 O -0.337 6.337 12 C 0.474 3.526 13 O -0.521 6.521 14 C -0.139 4.139 15 S -0.007 6.007 16 C -0.086 4.086 17 C -0.071 4.071 18 C -0.088 4.088 19 C 0.047 3.953 20 F -0.136 7.136 21 C 0.070 3.930 22 F -0.140 7.140 23 C -0.154 4.154 24 C -0.197 4.197 25 C -0.147 4.147 26 H 0.264 0.736 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.688 6.660 16.852 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.210 1.210 5 H -0.230 1.230 6 H -0.138 1.138 7 C -0.528 4.528 8 H 0.051 0.949 9 C -0.035 4.035 10 C 0.042 3.958 11 O -0.253 6.253 12 C 0.317 3.683 13 O -0.411 6.411 14 C -0.287 4.287 15 S 0.238 5.762 16 C -0.200 4.200 17 C -0.094 4.094 18 C -0.108 4.108 19 C 0.024 3.976 20 F -0.115 7.115 21 C 0.048 3.952 22 F -0.119 7.119 23 C -0.179 4.179 24 C -0.234 4.234 25 C -0.184 4.184 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.193 0.807 32 H 0.204 0.796 33 H 0.166 0.834 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.766 5.827 16.853 23.152 hybrid contribution -2.240 1.668 -0.475 2.833 sum 12.526 7.494 16.378 21.939 Atomic orbital electron populations 1.70049 1.08494 1.28042 1.52194 1.25762 0.95000 1.02760 0.93039 0.85937 0.81516 0.78316 0.77719 1.21035 1.23028 1.13771 1.20327 0.89057 0.92894 1.50474 0.94872 1.19303 0.93325 1.04188 0.86728 1.22759 0.97192 0.88130 0.87763 1.86701 1.58996 1.53670 1.25919 1.22801 0.80645 0.82131 0.82734 1.90646 1.27443 1.43503 1.79509 1.23600 1.05410 1.03954 0.95708 1.86145 1.31069 1.47501 1.11457 1.22016 0.97566 1.00547 0.99823 1.21018 1.00844 0.97221 0.90342 1.21356 0.92547 0.94718 1.02178 1.17931 0.96720 0.94635 0.88296 1.91515 1.85977 1.65127 1.68888 1.17768 0.85407 0.97030 0.94985 1.91520 1.47674 1.79902 1.92760 1.21207 0.97366 0.98148 1.01173 1.23048 1.01878 0.94367 1.04094 1.22976 1.01998 0.94188 0.99260 0.92670 0.91634 0.90660 0.83684 0.83530 0.80725 0.79621 0.83353 0.90815 0.87692 0.86850 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 2 C 0.03 1.82 5.46 84.66 0.46 2.29 16 3 Si 0.94 43.35 23.62 68.60 1.62 44.97 16 4 H -0.28 -12.86 6.99 99.48 0.69 -12.17 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.22 -8.88 5.30 99.48 0.53 -8.35 16 7 C -0.49 -26.86 9.22 25.60 0.24 -26.62 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 9 C -0.03 -1.48 1.39 -52.93 -0.07 -1.55 16 10 C 0.12 4.40 5.45 71.98 0.39 4.79 16 11 O -0.34 -13.09 7.44 -51.43 -0.38 -13.47 16 12 C 0.47 15.44 7.96 71.24 0.57 16.01 16 13 O -0.52 -18.28 15.54 21.99 0.34 -17.94 16 14 C -0.14 -3.35 4.93 71.24 0.35 -3.00 16 15 S -0.01 -0.14 21.07 -56.49 -1.19 -1.33 16 16 C -0.09 -1.51 6.11 22.60 0.14 -1.37 16 17 C -0.07 -0.88 9.79 22.41 0.22 -0.66 16 18 C -0.09 -1.04 10.02 22.29 0.22 -0.82 16 19 C 0.05 0.87 7.30 22.42 0.16 1.04 16 20 F -0.14 -2.84 17.18 44.97 0.77 -2.07 16 21 C 0.07 1.53 7.30 22.39 0.16 1.69 16 22 F -0.14 -3.63 17.18 44.97 0.77 -2.86 16 23 C -0.15 -3.07 9.34 22.45 0.21 -2.86 16 24 C -0.20 -7.49 7.15 30.59 0.22 -7.27 16 25 C -0.15 -5.24 9.95 30.59 0.30 -4.93 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.52 7.92 -2.39 -0.02 2.50 16 29 H 0.15 3.01 7.74 -2.39 -0.02 2.99 16 30 H 0.15 3.17 7.76 -2.39 -0.02 3.15 16 31 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.15 2.87 5.87 -2.91 -0.02 2.85 16 34 H 0.07 3.06 6.16 -2.39 -0.01 3.05 16 35 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -68.99 337.24 6.73 -62.26 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.92 Total: 11.54 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.58 Total: -23.28 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.30 Total: -57.82 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.04 Total: -31.41 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.54 Total: -4.93 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.62 Total: 44.97 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.19 Total: -1.33 kcal Total: -68.99 6.73 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174735748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.555 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds