Wall clock time and date at job start Tue Mar 31 2020 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99965 * 2 1 4 4 H 1.48503 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47220 * 300.00264 * 3 2 1 6 6 H 1.48500 * 109.47317 * 60.00568 * 3 2 1 7 7 C 1.37875 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 175.05019 * 7 2 1 9 9 C 1.50703 * 120.00178 * 355.33028 * 7 2 1 10 10 C 1.53008 * 115.54630 * 279.20149 * 9 7 2 11 11 O 1.45198 * 109.47292 * 294.88263 * 10 9 7 12 12 C 1.34227 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00450 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99832 * 180.02562 * 12 11 10 15 15 O 1.42904 * 109.46787 * 180.02562 * 14 12 11 16 16 C 1.35949 * 116.99604 * 179.97438 * 15 14 12 17 17 C 1.38729 * 120.02380 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.99447 * 180.02562 * 17 16 15 19 19 C 1.38450 * 120.04143 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.97429 * 179.97438 * 19 18 17 21 21 C 1.38548 * 120.04906 * 0.02562 * 19 18 17 22 22 Cl 1.73592 * 119.99477 * 180.02562 * 21 19 18 23 23 C 1.38274 * 120.00669 * 359.71791 * 21 19 18 24 24 C 1.52993 * 117.50111 * 133.49647 * 9 7 2 25 25 C 1.52990 * 60.00095 * 252.50720 * 24 9 7 26 26 H 0.97000 * 119.99589 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46585 * 54.88117 * 10 9 7 28 28 H 1.08998 * 109.47046 * 174.88201 * 10 9 7 29 29 H 1.09001 * 109.46491 * 299.99593 * 14 12 11 30 30 H 1.08991 * 109.47268 * 59.99864 * 14 12 11 31 31 H 1.08005 * 120.00190 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.98329 * 180.02562 * 18 17 16 33 33 H 1.07995 * 120.02372 * 180.27716 * 23 21 19 34 34 H 1.08997 * 117.50221 * 0.02562 * 24 9 7 35 35 H 1.09005 * 117.49787 * 145.01522 * 24 9 7 36 36 H 1.09001 * 117.50602 * 252.51232 * 25 24 9 37 37 H 1.09004 * 117.51766 * 107.47804 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0812 9 6 1.2547 -2.4971 0.1051 10 6 0.8317 -2.9021 1.5187 11 8 2.0132 -3.1572 2.3232 12 6 1.8142 -3.5252 3.5985 13 8 0.6900 -3.6313 4.0284 14 6 2.9931 -3.8062 4.4944 15 8 2.5265 -4.1772 5.7932 16 6 3.4698 -4.4663 6.7285 17 6 3.0868 -4.8332 8.0104 18 6 4.0459 -5.1263 8.9604 19 6 5.3894 -5.0547 8.6340 20 9 6.3262 -5.3412 9.5644 21 6 5.7739 -4.6885 7.3543 22 17 7.4589 -4.5998 6.9464 23 6 4.8156 -4.3998 6.4003 24 6 1.6414 -3.6153 -0.8647 25 6 0.3184 -2.8688 -1.0463 26 1 -0.4849 0.8401 0.0004 27 1 0.2522 -2.0964 1.9693 28 1 0.2228 -3.8049 1.4710 29 1 3.5826 -4.6210 4.0741 30 1 3.6118 -2.9123 4.5718 31 1 2.0388 -4.8897 8.2655 32 1 3.7475 -5.4123 9.9581 33 1 5.1149 -4.1186 5.4015 34 1 2.4384 -3.4088 -1.5790 35 1 1.5946 -4.6400 -0.4959 36 1 -0.5989 -3.4021 -0.7969 37 1 0.2444 -2.1707 -1.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174742102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:41 Heat of formation + Delta-G solvation = -118.358664 kcal Electronic energy + Delta-G solvation = -24320.063814 eV Core-core repulsion = 20197.652104 eV Total energy + Delta-G solvation = -4122.411710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.22390 -40.77033 -39.74764 -37.90081 -36.91271 -36.63846 -35.36837 -32.04132 -31.56640 -30.50959 -28.86348 -26.66419 -25.28645 -23.71116 -22.83676 -21.30458 -20.68017 -19.36756 -18.97881 -17.83109 -17.55413 -16.88564 -16.80799 -16.45414 -16.05103 -15.63041 -15.45915 -15.26006 -14.64568 -14.38782 -14.26583 -13.82794 -13.53775 -13.40462 -13.16724 -12.99516 -12.47902 -12.18575 -11.99641 -11.73791 -11.56464 -11.38202 -11.08343 -11.03345 -10.95407 -10.58878 -10.36150 -10.17030 -10.02204 -9.59114 -9.50182 -9.00506 -8.56944 -8.53991 -8.28118 -6.13813 -4.20008 0.50513 0.65305 1.56851 2.16360 2.46937 2.97644 3.23074 3.32096 3.35536 3.49467 3.72626 4.19483 4.33089 4.35424 4.56355 4.75267 4.83673 4.93319 5.04177 5.08363 5.15084 5.34832 5.40597 5.59063 5.64977 5.86167 6.06049 6.13136 6.21883 6.40207 6.53896 6.65111 6.81114 6.96780 7.05213 7.25063 7.40498 7.79496 8.15346 8.30896 8.81992 9.46434 10.95192 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002543 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.219182 B =11009.742087 C =11601.615797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.118 3.882 11 O -0.331 6.331 12 C 0.457 3.543 13 O -0.499 6.499 14 C 0.063 3.937 15 O -0.283 6.283 16 C 0.142 3.858 17 C -0.114 4.114 18 C -0.100 4.100 19 C 0.068 3.932 20 F -0.129 7.129 21 C -0.032 4.032 22 Cl -0.044 7.044 23 C -0.179 4.179 24 C -0.205 4.205 25 C -0.142 4.142 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -10.421 15.176 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.034 3.966 10 C 0.045 3.955 11 O -0.247 6.247 12 C 0.298 3.702 13 O -0.387 6.387 14 C -0.013 4.013 15 O -0.196 6.196 16 C 0.095 3.905 17 C -0.133 4.133 18 C -0.119 4.119 19 C 0.047 3.953 20 F -0.108 7.108 21 C -0.060 4.060 22 Cl -0.015 7.015 23 C -0.198 4.198 24 C -0.242 4.242 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.878 -10.307 15.248 20.434 hybrid contribution 0.723 0.969 -0.013 1.210 sum 9.602 -9.338 15.235 20.285 Atomic orbital electron populations 1.70006 1.05900 1.26696 1.49095 1.25027 0.94884 0.99161 0.94439 0.86530 0.80299 0.83519 0.77688 1.19533 1.20945 1.20890 1.20427 0.92917 0.88277 1.51229 0.91779 1.18785 0.99608 0.93661 0.84545 1.23004 0.82778 0.98672 0.91020 1.86487 1.41098 1.76735 1.20357 1.22600 0.89475 0.75057 0.83103 1.90676 1.25171 1.47458 1.75379 1.22063 0.94646 1.03564 0.81063 1.86162 1.31899 1.82102 1.19416 1.18864 0.86859 0.95133 0.89610 1.20437 1.01315 1.01791 0.89766 1.20941 0.89613 1.00315 1.01006 1.17277 0.86645 1.05677 0.85666 1.91534 1.64091 1.91228 1.63899 1.20697 0.87085 1.04714 0.93468 1.98407 1.12838 1.96610 1.93603 1.21128 0.90924 1.06736 1.01000 1.22982 0.99587 0.95712 1.05903 1.22558 0.91471 1.01719 1.02239 0.92877 0.90452 0.93854 0.87477 0.87235 0.83064 0.82898 0.82928 0.90016 0.91489 0.91640 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 12.86 55.43 0.71 -23.47 16 2 C 0.07 1.81 5.44 -17.82 -0.10 1.71 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.89 8.75 -34.44 -0.30 -13.19 16 8 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 9 C 0.03 0.82 1.62 -155.66 -0.25 0.57 16 10 C 0.12 2.66 5.29 37.16 0.20 2.86 16 11 O -0.33 -6.67 10.16 -39.25 -0.40 -7.07 16 12 C 0.46 8.07 8.03 36.01 0.29 8.36 16 13 O -0.50 -10.35 16.25 -25.47 -0.41 -10.76 16 14 C 0.06 0.76 5.33 36.01 0.19 0.96 16 15 O -0.28 -3.63 9.67 -39.53 -0.38 -4.02 16 16 C 0.14 1.47 6.69 -39.24 -0.26 1.21 16 17 C -0.11 -0.99 9.98 -39.43 -0.39 -1.38 16 18 C -0.10 -0.77 10.02 -39.54 -0.40 -1.17 16 19 C 0.07 0.64 7.27 -39.39 -0.29 0.36 16 20 F -0.13 -1.31 16.83 2.25 0.04 -1.27 16 21 C -0.03 -0.31 6.32 -39.45 -0.25 -0.56 16 22 Cl -0.04 -0.43 28.61 -51.86 -1.48 -1.91 16 23 C -0.18 -1.70 8.82 -39.41 -0.35 -2.04 16 24 C -0.20 -4.25 9.95 -26.74 -0.27 -4.51 16 25 C -0.14 -3.18 9.39 -26.74 -0.25 -3.43 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.08 1.93 8.13 -51.93 -0.42 1.51 16 28 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 29 H 0.11 0.99 7.65 -51.93 -0.40 0.60 16 30 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 31 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 1.23 6.30 -52.49 -0.33 0.90 16 34 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -30.02 350.79 -8.14 -38.16 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.05 Total: -0.15 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.43 Total: -10.28 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.71 Total: -23.47 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.19 Total: -21.85 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.02 -8.14 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174742102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.196 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds