Wall clock time and date at job start Tue Mar 31 2020 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99965 * 2 1 4 4 H 1.48503 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47220 * 300.00264 * 3 2 1 6 6 H 1.48500 * 109.47317 * 60.00568 * 3 2 1 7 7 C 1.37875 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 175.05019 * 7 2 1 9 9 C 1.50703 * 120.00178 * 355.33028 * 7 2 1 10 10 C 1.53008 * 115.54630 * 279.20149 * 9 7 2 11 11 O 1.45198 * 109.47292 * 294.88263 * 10 9 7 12 12 C 1.34227 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00450 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99832 * 180.02562 * 12 11 10 15 15 O 1.42904 * 109.46787 * 180.02562 * 14 12 11 16 16 C 1.35949 * 116.99604 * 179.97438 * 15 14 12 17 17 C 1.38729 * 120.02380 * 179.97438 * 16 15 14 18 18 C 1.38144 * 119.99447 * 180.02562 * 17 16 15 19 19 C 1.38450 * 120.04143 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.97429 * 179.97438 * 19 18 17 21 21 C 1.38548 * 120.04906 * 0.02562 * 19 18 17 22 22 Cl 1.73592 * 119.99477 * 180.02562 * 21 19 18 23 23 C 1.38274 * 120.00669 * 359.71791 * 21 19 18 24 24 C 1.52993 * 117.50111 * 133.49647 * 9 7 2 25 25 C 1.52990 * 60.00095 * 252.50720 * 24 9 7 26 26 H 0.97000 * 119.99589 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46585 * 54.88117 * 10 9 7 28 28 H 1.08998 * 109.47046 * 174.88201 * 10 9 7 29 29 H 1.09001 * 109.46491 * 299.99593 * 14 12 11 30 30 H 1.08991 * 109.47268 * 59.99864 * 14 12 11 31 31 H 1.08005 * 120.00190 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.98329 * 180.02562 * 18 17 16 33 33 H 1.07995 * 120.02372 * 180.27716 * 23 21 19 34 34 H 1.08997 * 117.50221 * 0.02562 * 24 9 7 35 35 H 1.09005 * 117.49787 * 145.01522 * 24 9 7 36 36 H 1.09001 * 117.50602 * 252.51232 * 25 24 9 37 37 H 1.09004 * 117.51766 * 107.47804 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0812 9 6 1.2547 -2.4971 0.1051 10 6 0.8317 -2.9021 1.5187 11 8 2.0132 -3.1572 2.3232 12 6 1.8142 -3.5252 3.5985 13 8 0.6900 -3.6313 4.0284 14 6 2.9931 -3.8062 4.4944 15 8 2.5265 -4.1772 5.7932 16 6 3.4698 -4.4663 6.7285 17 6 3.0868 -4.8332 8.0104 18 6 4.0459 -5.1263 8.9604 19 6 5.3894 -5.0547 8.6340 20 9 6.3262 -5.3412 9.5644 21 6 5.7739 -4.6885 7.3543 22 17 7.4589 -4.5998 6.9464 23 6 4.8156 -4.3998 6.4003 24 6 1.6414 -3.6153 -0.8647 25 6 0.3184 -2.8688 -1.0463 26 1 -0.4849 0.8401 0.0004 27 1 0.2522 -2.0964 1.9693 28 1 0.2228 -3.8049 1.4710 29 1 3.5826 -4.6210 4.0741 30 1 3.6118 -2.9123 4.5718 31 1 2.0388 -4.8897 8.2655 32 1 3.7475 -5.4123 9.9581 33 1 5.1149 -4.1186 5.4015 34 1 2.4384 -3.4088 -1.5790 35 1 1.5946 -4.6400 -0.4959 36 1 -0.5989 -3.4021 -0.7969 37 1 0.2444 -2.1707 -1.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174742102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:41 Heat of formation + Delta-G solvation = -132.528648 kcal Electronic energy + Delta-G solvation = -24320.678271 eV Core-core repulsion = 20197.652104 eV Total energy + Delta-G solvation = -4123.026167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.96849 -41.80812 -40.99107 -38.87657 -38.37986 -37.48650 -36.96808 -34.03341 -32.27106 -31.39987 -29.89825 -28.28794 -27.18767 -24.47748 -23.62448 -22.97988 -22.02763 -21.20870 -19.81872 -18.69740 -18.66337 -18.32915 -17.98597 -17.80262 -16.95428 -16.91168 -16.64552 -16.35967 -16.31405 -15.65934 -15.10252 -15.02248 -14.77770 -14.23546 -14.20359 -14.06553 -13.86700 -13.67791 -13.46924 -12.99953 -12.90210 -12.85690 -12.41007 -12.33698 -12.09814 -12.07358 -11.86932 -11.73745 -11.68669 -11.33469 -10.90047 -10.46738 -10.17760 -10.08587 -9.32582 -8.14265 -6.25558 -0.18398 -0.05044 0.84000 1.04149 1.09841 1.40675 1.44238 1.54521 2.28436 2.38908 2.43013 3.02311 3.15052 3.33230 3.54853 3.59191 3.73211 3.89454 3.96253 4.00624 4.12711 4.36416 4.38201 4.41775 4.46797 4.64665 4.71488 4.82063 4.94623 4.95885 4.98455 5.19687 5.38914 5.41236 5.56394 5.64644 5.75580 6.00817 6.34758 6.69775 6.80401 7.43517 8.94378 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002543 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.219182 B =11009.742087 C =11601.615797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.003 3.997 10 C 0.130 3.870 11 O -0.337 6.337 12 C 0.453 3.547 13 O -0.535 6.535 14 C 0.071 3.929 15 O -0.305 6.305 16 C 0.127 3.873 17 C -0.114 4.114 18 C -0.088 4.088 19 C 0.058 3.942 20 F -0.135 7.135 21 C -0.043 4.043 22 Cl -0.047 7.047 23 C -0.177 4.177 24 C -0.175 4.175 25 C -0.147 4.147 26 H 0.260 0.740 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -11.208 16.061 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.057 3.943 11 O -0.253 6.253 12 C 0.297 3.703 13 O -0.425 6.425 14 C -0.004 4.004 15 O -0.219 6.219 16 C 0.082 3.918 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.038 3.962 20 F -0.113 7.113 21 C -0.071 4.071 22 Cl -0.018 7.018 23 C -0.196 4.196 24 C -0.212 4.212 25 C -0.185 4.185 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.182 0.818 32 H 0.199 0.801 33 H 0.184 0.816 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.275 -11.106 16.139 22.122 hybrid contribution 0.313 1.156 -0.210 1.215 sum 10.588 -9.950 15.929 21.560 Atomic orbital electron populations 1.70109 1.07120 1.27214 1.50287 1.25717 0.95590 1.02135 0.94363 0.85623 0.79492 0.79859 0.77450 1.18681 1.20719 1.20990 1.20698 0.92878 0.89724 1.50726 0.92334 1.18877 1.00997 0.94292 0.85619 1.22571 0.83348 0.97776 0.90647 1.86476 1.39884 1.77187 1.21748 1.23657 0.90792 0.73397 0.82470 1.90657 1.27186 1.49014 1.75664 1.22165 0.91867 1.05990 0.80375 1.86114 1.33188 1.82794 1.19780 1.19028 0.86814 0.96299 0.89693 1.20685 1.02255 1.00991 0.89280 1.21208 0.88542 0.98898 1.02012 1.17530 0.87253 1.05870 0.85546 1.91521 1.64432 1.91312 1.64066 1.20810 0.87046 1.05369 0.93855 1.98404 1.13113 1.96669 1.93641 1.21213 0.90470 1.06328 1.01564 1.22998 0.98247 0.96076 1.03924 1.22484 0.92850 1.02010 1.01144 0.93052 0.94047 0.92803 0.83973 0.84852 0.81802 0.80057 0.81623 0.89592 0.88814 0.90471 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.87 12.86 21.45 0.28 -50.60 16 2 C 0.02 1.19 5.44 84.65 0.46 1.65 16 3 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.50 -26.43 8.75 25.60 0.22 -26.21 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.00 0.12 1.62 -52.93 -0.09 0.04 16 10 C 0.13 5.90 5.29 71.98 0.38 6.28 16 11 O -0.34 -13.38 10.16 -51.38 -0.52 -13.91 16 12 C 0.45 15.68 8.03 71.24 0.57 16.25 16 13 O -0.54 -22.33 16.25 28.41 0.46 -21.86 16 14 C 0.07 1.59 5.33 71.24 0.38 1.97 16 15 O -0.31 -7.32 9.67 -73.89 -0.71 -8.03 16 16 C 0.13 2.39 6.69 22.49 0.15 2.54 16 17 C -0.11 -1.71 9.98 22.36 0.22 -1.49 16 18 C -0.09 -1.14 10.02 22.30 0.22 -0.92 16 19 C 0.06 0.99 7.27 22.39 0.16 1.16 16 20 F -0.13 -2.53 16.83 44.97 0.76 -1.77 16 21 C -0.04 -0.77 6.32 22.35 0.14 -0.63 16 22 Cl -0.05 -0.86 28.61 -2.72 -0.08 -0.94 16 23 C -0.18 -2.97 8.82 22.38 0.20 -2.77 16 24 C -0.18 -6.99 9.95 30.59 0.30 -6.68 16 25 C -0.15 -6.56 9.39 30.59 0.29 -6.27 16 26 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 28 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 29 H 0.14 2.18 7.65 -2.39 -0.02 2.16 16 30 H 0.13 2.35 7.67 -2.39 -0.02 2.34 16 31 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.17 2.22 6.30 -2.91 -0.02 2.20 16 34 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 3.35 8.14 -2.38 -0.02 3.33 16 Total: -1.00 -65.36 350.79 6.94 -58.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.11 Total: 9.58 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 3.62 Total: -15.10 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.28 Total: -50.60 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.77 Total: -43.80 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.76 Total: -1.77 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -65.36 6.94 -58.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174742102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.110 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds