Wall clock time and date at job start Tue Mar 31 2020 15:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39660 * 119.95851 * 73.39558 * 3 2 1 5 5 C 1.37948 * 120.04534 * 179.76387 * 4 3 2 6 6 F 1.35104 * 120.02047 * 180.27424 * 5 4 3 7 7 C 1.40037 * 119.95450 * 0.52773 * 5 4 3 8 8 C 1.47432 * 120.04117 * 179.69850 * 7 5 4 9 9 O 1.21614 * 119.99876 * 265.05115 * 8 7 5 10 10 N 1.34779 * 119.99831 * 85.05655 * 8 7 5 11 11 C 1.36857 * 119.99798 * 6.01878 * 10 8 7 12 12 H 1.07999 * 120.00379 * 53.65491 * 11 10 8 13 13 C 1.39020 * 120.00220 * 233.64864 * 11 10 8 14 14 N 1.31353 * 119.99594 * 5.46808 * 13 11 10 15 15 Si 1.86793 * 120.00408 * 185.46547 * 13 11 10 16 16 H 1.48503 * 109.47139 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47424 * 120.00238 * 15 13 11 18 18 H 1.48504 * 109.47373 * 239.99977 * 15 13 11 19 19 C 1.39695 * 120.00061 * 186.02374 * 10 8 7 20 20 C 1.38988 * 120.08006 * 8.31105 * 19 10 8 21 21 C 1.38077 * 119.91843 * 179.79347 * 20 19 10 22 22 C 1.38314 * 120.08219 * 0.46816 * 21 20 19 23 23 C 1.38312 * 120.15539 * 359.78315 * 22 21 20 24 24 C 1.38077 * 120.08366 * 359.97438 * 23 22 21 25 25 C 1.40036 * 119.91202 * 359.72616 * 7 5 4 26 26 F 1.35094 * 120.02009 * 180.02562 * 25 7 5 27 27 C 1.37948 * 119.95373 * 359.97438 * 25 7 5 28 28 H 1.08010 * 119.97579 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00201 * 184.99363 * 14 13 11 30 30 H 1.08002 * 120.03678 * 0.02562 * 20 19 10 31 31 H 1.07997 * 119.95739 * 180.25062 * 21 20 19 32 32 H 1.07995 * 119.91785 * 179.76555 * 22 21 20 33 33 H 1.08008 * 119.95449 * 179.97438 * 23 22 21 34 34 H 1.08004 * 120.03765 * 179.97438 * 24 23 22 35 35 H 1.07994 * 119.97441 * 180.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2656 -0.3448 -1.1595 5 6 4.6451 -0.3401 -1.1630 6 9 5.3194 -0.6690 -2.2865 7 6 5.3460 0.0007 0.0005 8 6 6.8203 -0.0001 0.0009 9 8 7.4278 -0.9817 0.3835 10 7 7.4949 1.0872 -0.4228 11 6 6.8168 2.2339 -0.7363 12 1 6.1388 2.6734 -0.0197 13 6 7.0010 2.8332 -1.9771 14 7 7.7411 2.2433 -2.8879 15 14 6.1958 4.4771 -2.3491 16 1 5.4203 4.9277 -1.1655 17 1 7.2433 5.4811 -2.6654 18 1 5.2841 4.3299 -3.5121 19 6 8.8860 1.0435 -0.5419 20 6 9.5605 -0.1625 -0.3925 21 6 10.9352 -0.2025 -0.5152 22 6 11.6420 0.9572 -0.7769 23 6 10.9746 2.1600 -0.9211 24 6 9.5995 2.2069 -0.8046 25 6 4.6447 0.3417 1.1636 26 9 5.3187 0.6713 2.2871 27 6 3.2653 0.3417 1.1612 28 1 2.7246 -0.6118 -2.0555 29 1 7.9292 2.6937 -3.7261 30 1 9.0096 -1.0678 -0.1843 31 1 11.4596 -1.1400 -0.4032 32 1 12.7175 0.9235 -0.8686 33 1 11.5298 3.0638 -1.1250 34 1 9.0792 3.1466 -0.9169 35 1 2.7241 0.6050 2.0579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176102862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:32 Heat of formation + Delta-G solvation = -14.730123 kcal Electronic energy + Delta-G solvation = -27429.823032 eV Core-core repulsion = 23223.170288 eV Total energy + Delta-G solvation = -4206.652744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.88520 -48.70069 -40.04239 -38.91580 -37.31359 -36.34417 -35.17932 -32.08170 -31.65469 -30.54939 -29.77800 -28.80503 -25.62358 -24.95931 -22.90616 -22.01950 -21.37862 -19.97768 -19.52043 -18.25407 -17.38544 -16.82584 -16.43123 -15.88755 -15.68054 -15.61080 -15.47966 -15.11053 -15.04715 -14.53144 -13.99053 -13.96219 -13.84044 -13.53357 -13.49801 -13.13699 -13.06031 -12.48477 -12.38006 -12.16073 -12.04381 -11.78601 -11.66343 -11.60485 -11.40083 -11.20302 -10.91965 -10.54025 -10.15542 -9.42376 -9.03315 -8.88239 -8.82593 -8.55435 -7.88997 -7.03919 -6.46164 -4.66893 0.36485 0.94732 2.22261 2.41996 2.46877 2.60445 2.94107 3.05623 3.08723 3.36395 3.39208 3.52265 3.81780 4.03790 4.13430 4.40651 4.62992 4.73628 4.77861 5.07442 5.16635 5.26195 5.71809 5.78890 5.80230 5.84406 5.93811 5.95453 6.07686 6.56261 6.58564 6.61053 6.75002 7.00237 7.13304 7.23470 7.38527 7.49250 7.52371 7.60821 7.94748 8.24507 8.67393 8.95369 9.37287 10.35339 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.005210 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.561252 B = 5373.371687 C = 6340.854869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.264 3.736 3 C 0.025 3.975 4 C -0.122 4.122 5 C 0.174 3.826 6 F -0.107 7.107 7 C -0.107 4.107 8 C 0.524 3.476 9 O -0.547 6.547 10 N -0.360 5.360 11 C -0.380 4.380 12 H 0.095 0.905 13 C 0.064 3.936 14 N -0.828 5.828 15 Si 0.911 3.089 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.275 1.275 19 C 0.189 3.811 20 C -0.177 4.177 21 C -0.117 4.117 22 C -0.168 4.168 23 C -0.120 4.120 24 C -0.100 4.100 25 C 0.156 3.844 26 F -0.117 7.117 27 C -0.121 4.121 28 H 0.154 0.846 29 H 0.277 0.723 30 H 0.164 0.836 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -1.015 2.927 4.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.051 4.051 3 C 0.021 3.979 4 C -0.143 4.143 5 C 0.154 3.846 6 F -0.085 7.085 7 C -0.113 4.113 8 C 0.313 3.687 9 O -0.431 6.431 10 N -0.066 5.066 11 C -0.506 4.506 12 H 0.113 0.887 13 C -0.149 4.149 14 N -0.458 5.458 15 Si 0.736 3.264 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.200 1.200 19 C 0.093 3.907 20 C -0.197 4.197 21 C -0.136 4.136 22 C -0.188 4.188 23 C -0.139 4.139 24 C -0.121 4.121 25 C 0.135 3.865 26 F -0.095 7.095 27 C -0.143 4.143 28 H 0.171 0.829 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.307 -1.487 2.868 6.213 hybrid contribution 0.457 1.096 -0.576 1.320 sum -4.850 -0.391 2.292 5.378 Atomic orbital electron populations 1.81263 1.11720 1.08288 1.07159 1.25296 0.92128 0.93845 0.93877 1.15194 0.84489 1.04136 0.94064 1.20970 0.91925 1.02456 0.98954 1.16891 0.88637 0.97246 0.81842 1.91642 1.80059 1.88881 1.47904 1.20157 0.96351 1.01974 0.92776 1.18188 0.85558 0.83175 0.81736 1.90470 1.67296 1.34731 1.50577 1.40811 1.02890 1.10211 1.52671 1.19372 1.28003 1.03403 0.99865 0.88748 1.25610 0.95575 0.99260 0.94441 1.69929 1.33127 1.36359 1.06412 0.86098 0.79677 0.81369 0.79283 1.18593 1.19880 1.19988 1.18114 0.83172 0.93514 0.95877 1.22335 0.94532 0.99285 1.03501 1.20842 0.94198 0.97244 1.01307 1.20800 0.98473 0.93481 1.06000 1.20748 0.94113 0.97075 1.01959 1.20765 0.92733 0.98015 1.00573 1.16933 0.88819 0.98433 0.82267 1.91580 1.80221 1.89413 1.48264 1.20902 0.91796 1.02628 0.98953 0.82871 0.91223 0.81948 0.87498 0.87953 0.87571 0.85727 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.53 18.54 41.84 0.78 -4.76 16 2 C 0.26 3.12 15.31 -22.47 -0.34 2.77 16 3 C 0.02 0.29 5.73 -106.91 -0.61 -0.32 16 4 C -0.12 -1.53 9.71 -39.16 -0.38 -1.91 16 5 C 0.17 2.94 7.28 -39.01 -0.28 2.65 16 6 F -0.11 -2.07 16.82 2.25 0.04 -2.03 16 7 C -0.11 -2.00 4.39 -104.81 -0.46 -2.46 16 8 C 0.52 11.96 6.23 -12.52 -0.08 11.88 16 9 O -0.55 -13.24 13.63 5.27 0.07 -13.17 16 10 N -0.36 -8.63 2.65 -60.11 -0.16 -8.79 16 11 C -0.38 -8.83 7.43 -15.02 -0.11 -8.94 16 12 H 0.09 2.12 7.83 -52.49 -0.41 1.71 16 13 C 0.06 1.46 3.85 -17.47 -0.07 1.39 16 14 N -0.83 -20.37 11.62 55.50 0.64 -19.72 16 15 Si 0.91 17.80 29.56 -169.99 -5.02 12.77 16 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 C 0.19 4.56 5.71 -83.72 -0.48 4.08 16 20 C -0.18 -4.08 8.96 -39.36 -0.35 -4.43 16 21 C -0.12 -2.35 10.04 -39.61 -0.40 -2.75 16 22 C -0.17 -3.19 10.04 -39.53 -0.40 -3.59 16 23 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 24 C -0.10 -2.27 7.85 -39.37 -0.31 -2.58 16 25 C 0.16 2.45 7.28 -39.01 -0.28 2.17 16 26 F -0.12 -1.97 16.82 2.25 0.04 -1.93 16 27 C -0.12 -1.44 9.71 -39.15 -0.38 -1.82 16 28 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 30 H 0.16 3.90 4.75 -55.04 -0.26 3.64 16 31 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 34 H 0.12 2.88 6.03 -52.48 -0.32 2.56 16 35 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -27.53 327.72 -6.25 -33.78 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -2.24 Total: 5.56 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -5.33 Total: -6.65 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 1.26 Total: -33.27 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.53 -6.25 -33.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176102862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.055 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds