Wall clock time and date at job start Tue Mar 31 2020 15:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39660 * 119.95851 * 73.39558 * 3 2 1 5 5 C 1.37948 * 120.04534 * 179.76387 * 4 3 2 6 6 F 1.35104 * 120.02047 * 180.27424 * 5 4 3 7 7 C 1.40037 * 119.95450 * 0.52773 * 5 4 3 8 8 C 1.47432 * 120.04117 * 179.69850 * 7 5 4 9 9 O 1.21614 * 119.99876 * 265.05115 * 8 7 5 10 10 N 1.34779 * 119.99831 * 85.05655 * 8 7 5 11 11 C 1.36857 * 119.99798 * 6.01878 * 10 8 7 12 12 H 1.07999 * 120.00379 * 53.65491 * 11 10 8 13 13 C 1.39020 * 120.00220 * 233.64864 * 11 10 8 14 14 N 1.31353 * 119.99594 * 5.46808 * 13 11 10 15 15 Si 1.86793 * 120.00408 * 185.46547 * 13 11 10 16 16 H 1.48503 * 109.47139 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47424 * 120.00238 * 15 13 11 18 18 H 1.48504 * 109.47373 * 239.99977 * 15 13 11 19 19 C 1.39695 * 120.00061 * 186.02374 * 10 8 7 20 20 C 1.38988 * 120.08006 * 8.31105 * 19 10 8 21 21 C 1.38077 * 119.91843 * 179.79347 * 20 19 10 22 22 C 1.38314 * 120.08219 * 0.46816 * 21 20 19 23 23 C 1.38312 * 120.15539 * 359.78315 * 22 21 20 24 24 C 1.38077 * 120.08366 * 359.97438 * 23 22 21 25 25 C 1.40036 * 119.91202 * 359.72616 * 7 5 4 26 26 F 1.35094 * 120.02009 * 180.02562 * 25 7 5 27 27 C 1.37948 * 119.95373 * 359.97438 * 25 7 5 28 28 H 1.08010 * 119.97579 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00201 * 184.99363 * 14 13 11 30 30 H 1.08002 * 120.03678 * 0.02562 * 20 19 10 31 31 H 1.07997 * 119.95739 * 180.25062 * 21 20 19 32 32 H 1.07995 * 119.91785 * 179.76555 * 22 21 20 33 33 H 1.08008 * 119.95449 * 179.97438 * 23 22 21 34 34 H 1.08004 * 120.03765 * 179.97438 * 24 23 22 35 35 H 1.07994 * 119.97441 * 180.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2656 -0.3448 -1.1595 5 6 4.6451 -0.3401 -1.1630 6 9 5.3194 -0.6690 -2.2865 7 6 5.3460 0.0007 0.0005 8 6 6.8203 -0.0001 0.0009 9 8 7.4278 -0.9817 0.3835 10 7 7.4949 1.0872 -0.4228 11 6 6.8168 2.2339 -0.7363 12 1 6.1388 2.6734 -0.0197 13 6 7.0010 2.8332 -1.9771 14 7 7.7411 2.2433 -2.8879 15 14 6.1958 4.4771 -2.3491 16 1 5.4203 4.9277 -1.1655 17 1 7.2433 5.4811 -2.6654 18 1 5.2841 4.3299 -3.5121 19 6 8.8860 1.0435 -0.5419 20 6 9.5605 -0.1625 -0.3925 21 6 10.9352 -0.2025 -0.5152 22 6 11.6420 0.9572 -0.7769 23 6 10.9746 2.1600 -0.9211 24 6 9.5995 2.2069 -0.8046 25 6 4.6447 0.3417 1.1636 26 9 5.3187 0.6713 2.2871 27 6 3.2653 0.3417 1.1612 28 1 2.7246 -0.6118 -2.0555 29 1 7.9292 2.6937 -3.7261 30 1 9.0096 -1.0678 -0.1843 31 1 11.4596 -1.1400 -0.4032 32 1 12.7175 0.9235 -0.8686 33 1 11.5298 3.0638 -1.1250 34 1 9.0792 3.1466 -0.9169 35 1 2.7241 0.6050 2.0579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176102862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:31 Heat of formation + Delta-G solvation = -27.564805 kcal Electronic energy + Delta-G solvation = -27430.379585 eV Core-core repulsion = 23223.170288 eV Total energy + Delta-G solvation = -4207.209297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.15615 -50.08332 -41.66964 -40.15408 -38.90115 -37.44593 -36.90285 -33.83920 -32.94204 -31.69316 -31.42542 -30.39985 -27.27670 -26.37186 -24.08580 -23.61401 -22.99628 -21.60319 -20.71196 -19.91079 -18.65816 -18.39779 -17.59646 -17.39288 -17.26538 -16.95778 -16.89968 -16.64955 -16.40297 -15.96271 -15.65447 -15.41595 -15.00445 -14.82120 -14.78661 -14.59187 -14.50213 -14.08030 -13.74377 -13.51633 -13.44459 -13.25935 -13.07545 -12.98921 -12.84742 -12.80856 -12.49459 -12.08307 -11.76890 -11.13811 -10.67728 -10.37232 -10.09062 -9.97133 -9.55057 -8.77294 -8.19088 -6.46683 -0.79613 -0.19381 0.57206 0.79673 1.37259 1.43028 1.44295 1.49004 1.56861 1.76028 2.18988 2.27427 2.46152 2.60257 2.85638 2.91364 3.24844 3.33097 3.64889 3.70674 3.75626 4.10626 4.29513 4.32605 4.53867 4.58714 4.61463 4.74889 4.82492 4.89165 4.95471 5.08620 5.31193 5.39242 5.41120 5.75334 5.81972 5.85380 5.95988 6.21802 6.26077 6.53665 6.91838 7.22611 7.64817 8.62607 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.005210 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.561252 B = 5373.371687 C = 6340.854869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.289 3.711 3 C 0.045 3.955 4 C -0.095 4.095 5 C 0.149 3.851 6 F -0.131 7.131 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.577 6.577 10 N -0.373 5.373 11 C -0.385 4.385 12 H 0.096 0.904 13 C 0.032 3.968 14 N -0.863 5.863 15 Si 0.970 3.030 16 H -0.251 1.251 17 H -0.272 1.272 18 H -0.274 1.274 19 C 0.158 3.842 20 C -0.206 4.206 21 C -0.117 4.117 22 C -0.160 4.160 23 C -0.119 4.119 24 C -0.119 4.119 25 C 0.143 3.857 26 F -0.128 7.128 27 C -0.089 4.089 28 H 0.185 0.815 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -0.044 3.131 5.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.026 4.026 3 C 0.041 3.959 4 C -0.116 4.116 5 C 0.129 3.871 6 F -0.109 7.109 7 C -0.143 4.143 8 C 0.303 3.697 9 O -0.463 6.463 10 N -0.080 5.080 11 C -0.512 4.512 12 H 0.114 0.886 13 C -0.177 4.177 14 N -0.495 5.495 15 Si 0.792 3.208 16 H -0.175 1.175 17 H -0.198 1.198 18 H -0.199 1.199 19 C 0.062 3.938 20 C -0.225 4.225 21 C -0.136 4.136 22 C -0.179 4.179 23 C -0.138 4.138 24 C -0.139 4.139 25 C 0.123 3.877 26 F -0.107 7.107 27 C -0.110 4.110 28 H 0.203 0.797 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.448 -0.513 3.088 7.167 hybrid contribution 0.818 0.734 -0.592 1.249 sum -5.629 0.221 2.496 6.162 Atomic orbital electron populations 1.81326 1.12289 1.08821 1.07788 1.24872 0.91427 0.93143 0.93195 1.15084 0.84393 1.02886 0.93515 1.21187 0.89964 1.00014 1.00406 1.17148 0.89992 0.99178 0.80796 1.91575 1.80878 1.89466 1.49022 1.20094 0.94206 1.04978 0.95000 1.18825 0.87549 0.82564 0.80801 1.90427 1.68670 1.35514 1.51663 1.41069 1.03232 1.10765 1.52886 1.19544 1.28082 1.03393 1.00171 0.88612 1.26292 0.95583 1.01961 0.93839 1.70045 1.34793 1.37815 1.06826 0.85208 0.78792 0.77561 0.79195 1.17471 1.19754 1.19938 1.18496 0.83742 0.94433 0.97093 1.22366 0.96138 0.98572 1.05474 1.21209 0.93094 0.99229 1.00032 1.21233 1.00472 0.92322 1.03869 1.21156 0.93196 0.98930 1.00495 1.20810 0.94080 0.97079 1.01968 1.17073 0.89995 0.99514 0.81123 1.91548 1.80790 1.89687 1.48626 1.21194 0.89912 0.99571 1.00280 0.79748 0.91363 0.83722 0.84622 0.83766 0.84492 0.86976 0.79026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.11 18.54 19.00 0.35 -9.75 16 2 C 0.29 5.71 15.31 88.33 1.35 7.07 16 3 C 0.04 0.90 5.73 -21.34 -0.12 0.78 16 4 C -0.09 -2.19 9.71 22.54 0.22 -1.97 16 5 C 0.15 5.07 7.28 22.64 0.16 5.24 16 6 F -0.13 -5.32 16.82 44.97 0.76 -4.56 16 7 C -0.14 -5.29 4.39 -19.98 -0.09 -5.37 16 8 C 0.51 24.75 6.23 86.66 0.54 25.29 16 9 O -0.58 -29.97 13.63 -4.07 -0.06 -30.03 16 10 N -0.37 -18.84 2.65 -462.35 -1.23 -20.06 16 11 C -0.39 -18.53 7.43 84.10 0.63 -17.90 16 12 H 0.10 4.42 7.83 -2.91 -0.02 4.39 16 13 C 0.03 1.50 3.85 84.95 0.33 1.83 16 14 N -0.86 -43.80 11.62 21.67 0.25 -43.55 16 15 Si 0.97 36.44 29.56 68.60 2.03 38.47 16 16 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 17 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 C 0.16 7.97 5.71 38.24 0.22 8.19 16 20 C -0.21 -9.91 8.96 22.41 0.20 -9.71 16 21 C -0.12 -4.65 10.04 22.25 0.22 -4.43 16 22 C -0.16 -5.75 10.04 22.31 0.22 -5.52 16 23 C -0.12 -4.62 10.04 22.25 0.22 -4.40 16 24 C -0.12 -5.51 7.85 22.41 0.18 -5.34 16 25 C 0.14 4.44 7.28 22.64 0.16 4.61 16 26 F -0.13 -4.37 16.82 44.97 0.76 -3.61 16 27 C -0.09 -1.85 9.71 22.55 0.22 -1.63 16 28 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 30 H 0.15 7.46 4.75 -43.40 -0.21 7.25 16 31 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 34 H 0.11 5.36 6.03 -2.91 -0.02 5.34 16 35 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.20 327.72 8.52 -55.68 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.99 Total: 20.70 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.67 Total: -3.28 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -0.62 Total: -73.37 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 1.51 Total: -8.17 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -64.20 8.52 -55.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176102862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.118 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds