Wall clock time and date at job start Tue Mar 31 2020 15:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47497 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47247 * 119.99291 * 3 2 1 7 7 C 1.37876 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00071 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47184 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47057 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99472 * 180.02562 * 12 11 10 14 14 O 1.21358 * 120.00429 * 359.97438 * 13 12 11 15 15 C 1.49355 * 119.99374 * 179.97438 * 13 12 11 16 16 O 1.21378 * 120.00187 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99933 * 179.97438 * 15 13 12 18 18 C 1.39713 * 120.00346 * 184.61747 * 17 15 13 19 19 C 1.38922 * 120.05646 * 324.88042 * 18 17 15 20 20 C 1.38300 * 119.92715 * 180.02562 * 19 18 17 21 21 F 1.35098 * 119.98033 * 179.97438 * 20 19 18 22 22 C 1.38522 * 120.03634 * 359.97438 * 20 19 18 23 23 C 1.38349 * 120.11861 * 359.97438 * 22 20 19 24 24 Cl 1.73592 * 119.96729 * 180.02562 * 23 22 20 25 25 C 1.38246 * 120.07095 * 0.02562 * 23 22 20 26 26 H 0.97002 * 119.99666 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47054 * 60.00265 * 9 7 2 28 28 H 1.09000 * 109.47182 * 300.00546 * 9 7 2 29 29 H 1.09001 * 109.47064 * 60.00098 * 10 9 7 30 30 H 1.09000 * 109.47379 * 300.00251 * 10 9 7 31 31 H 1.08994 * 109.47453 * 59.99588 * 11 10 9 32 32 H 1.09003 * 109.46827 * 299.99243 * 11 10 9 33 33 H 0.96997 * 120.00063 * 359.97438 * 12 11 10 34 34 H 0.97007 * 120.00087 * 4.62395 * 17 15 13 35 35 H 1.08003 * 120.03746 * 0.02562 * 19 18 17 36 36 H 1.08004 * 119.94145 * 180.27180 * 22 20 19 37 37 H 1.07998 * 120.02164 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0030 13 6 1.9827 -7.3713 0.0023 14 8 0.7896 -7.5930 0.0006 15 6 2.9533 -8.5065 0.0036 16 8 4.1466 -8.2848 0.0049 17 7 2.5040 -9.7772 0.0034 18 6 3.4080 -10.8379 0.1021 19 6 4.6575 -10.7452 -0.4980 20 6 5.5501 -11.7970 -0.3991 21 9 6.7653 -11.7082 -0.9827 22 6 5.1988 -12.9414 0.2979 23 6 3.9553 -13.0350 0.8970 24 17 3.5194 -14.4707 1.7701 25 6 3.0595 -11.9865 0.8012 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8711 -3.6040 0.8923 30 1 2.8725 -3.6048 -0.8877 31 1 0.8544 -5.0450 -0.8894 32 1 0.8525 -5.0447 0.8906 33 1 3.3857 -5.9235 0.0040 34 1 1.5529 -9.9554 -0.0653 35 1 4.9316 -9.8528 -1.0411 36 1 5.8988 -13.7600 0.3779 37 1 2.0888 -12.0606 1.2688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177718823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:27 Heat of formation + Delta-G solvation = -104.031828 kcal Electronic energy + Delta-G solvation = -23574.751355 eV Core-core repulsion = 19485.253655 eV Total energy + Delta-G solvation = -4089.497701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.39001 -41.44557 -39.75185 -38.55205 -37.09291 -35.99196 -35.10952 -33.41132 -31.36043 -31.05762 -30.47386 -27.39727 -25.41501 -23.71358 -23.27233 -22.29278 -20.93186 -20.41183 -19.16118 -18.34278 -17.31080 -16.91381 -16.77010 -16.45034 -16.21482 -16.06503 -15.88769 -15.32846 -15.19105 -14.73584 -14.49764 -14.07433 -14.02058 -13.83582 -13.61213 -12.82416 -12.51990 -12.35466 -12.15783 -11.96772 -11.90061 -11.75155 -11.63181 -10.93054 -10.84338 -10.81310 -10.67052 -10.00860 -9.97116 -9.49627 -9.28632 -9.20136 -9.15662 -8.94107 -8.41647 -6.06570 -4.09894 0.29977 0.43121 1.15453 1.37995 1.98310 2.75455 3.00470 3.26428 3.29816 3.34710 3.36932 3.70588 4.18534 4.33381 4.37404 4.40986 4.47459 4.60168 4.93233 5.29404 5.34976 5.44378 5.47170 5.53514 5.59006 5.61131 5.98124 6.08462 6.17324 6.45263 6.45718 6.64196 6.87524 7.09451 7.37871 7.56191 7.67326 7.80308 7.91322 8.31981 8.96250 9.54677 11.04573 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.001777 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.613469 B =15753.538615 C =16486.256959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.686 5.686 13 C 0.504 3.496 14 O -0.519 6.519 15 C 0.512 3.488 16 O -0.493 6.493 17 N -0.647 5.647 18 C 0.189 3.811 19 C -0.154 4.154 20 C 0.136 3.864 21 F -0.126 7.126 22 C -0.161 4.161 23 C 0.011 3.989 24 Cl -0.049 7.049 25 C -0.143 4.143 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.430 0.570 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -29.471 0.725 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.396 6.396 15 C 0.294 3.706 16 O -0.366 6.366 17 N -0.294 5.294 18 C 0.093 3.907 19 C -0.175 4.175 20 C 0.116 3.884 21 F -0.105 7.105 22 C -0.181 4.181 23 C -0.016 4.016 24 Cl -0.020 7.020 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.248 0.752 34 H 0.269 0.731 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.400 -29.349 0.791 30.278 hybrid contribution 0.605 0.822 -0.020 1.021 sum 8.006 -28.527 0.771 29.639 Atomic orbital electron populations 1.69951 1.06055 1.26882 1.50349 1.25025 0.94881 0.99346 0.95179 0.86623 0.79551 0.82979 0.78639 1.20222 1.21258 1.20213 1.21150 0.93017 0.90865 1.51251 0.92609 1.19029 0.93772 0.90741 0.97751 1.21942 0.99932 0.92852 1.01402 1.21916 0.91664 0.84521 1.02774 1.46086 1.12465 1.04793 1.70433 1.19616 0.88123 0.84261 0.79688 1.90799 1.15610 1.84476 1.48724 1.20671 0.89202 0.84049 0.76630 1.90791 1.16160 1.84401 1.45242 1.43126 1.11496 1.03709 1.71088 1.17124 0.90322 0.87604 0.95604 1.21373 0.93523 1.00259 1.02354 1.17137 0.81502 0.94142 0.95643 1.91561 1.40750 1.96398 1.81752 1.20982 0.97080 0.98969 1.01098 1.20185 0.94226 0.89493 0.97735 1.98407 1.92820 1.36408 1.74389 1.20839 1.01644 0.92537 1.01411 0.92826 0.96163 0.96170 0.92347 0.92353 0.90823 0.90845 0.75153 0.73121 0.82204 0.83331 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 12 N -0.69 -9.12 5.55 -60.76 -0.34 -9.46 16 13 C 0.50 6.53 7.89 -11.63 -0.09 6.44 16 14 O -0.52 -7.75 16.48 5.49 0.09 -7.66 16 15 C 0.51 5.70 7.73 -11.63 -0.09 5.61 16 16 O -0.49 -6.25 13.91 5.47 0.08 -6.18 16 17 N -0.65 -5.57 5.32 -10.30 -0.05 -5.62 16 18 C 0.19 1.60 6.29 -83.77 -0.53 1.07 16 19 C -0.15 -1.45 8.67 -39.31 -0.34 -1.79 16 20 C 0.14 1.19 7.30 -39.45 -0.29 0.90 16 21 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 22 C -0.16 -1.17 9.80 -39.44 -0.39 -1.55 16 23 C 0.01 0.08 6.31 -39.54 -0.25 -0.17 16 24 Cl -0.05 -0.32 28.95 -51.86 -1.50 -1.82 16 25 C -0.14 -0.99 9.75 -39.33 -0.38 -1.38 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.41 4.93 7.94 -40.82 -0.32 4.60 16 34 H 0.43 2.92 8.30 -40.82 -0.34 2.58 16 35 H 0.16 1.67 6.22 -52.48 -0.33 1.35 16 36 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -30.62 349.33 -7.69 -38.31 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.91 Total: 1.82 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.07 Total: -4.15 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.34 Total: -40.56 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.17 Total: -13.84 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.62 -7.69 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177718823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.718 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds