Wall clock time and date at job start Tue Mar 31 2020 15:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99248 * 3 2 1 5 5 H 1.48493 * 109.47568 * 29.99532 * 3 2 1 6 6 H 1.48507 * 109.47045 * 149.99986 * 3 2 1 7 7 C 1.39101 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00107 * 205.61343 * 7 2 1 9 9 N 1.36701 * 119.99882 * 25.61875 * 7 2 1 10 10 C 1.34785 * 120.00172 * 47.58711 * 9 7 2 11 11 O 1.21726 * 119.99780 * 356.04877 * 10 9 7 12 12 C 1.46363 * 119.99976 * 176.04560 * 10 9 7 13 13 C 1.34868 * 119.99764 * 174.75590 * 12 10 9 14 14 C 1.47301 * 119.99837 * 185.20669 * 13 12 10 15 15 C 1.40251 * 120.94870 * 355.81924 * 14 13 12 16 16 C 1.37904 * 118.99762 * 179.97438 * 15 14 13 17 17 N 1.31937 * 120.94712 * 359.97438 * 16 15 14 18 18 C 1.31984 * 122.11044 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.55378 * 180.02562 * 18 17 16 20 20 C 1.38166 * 120.88843 * 359.97438 * 18 17 16 21 21 C 1.39669 * 119.99997 * 227.58473 * 9 7 2 22 22 C 1.38995 * 120.07956 * 86.56814 * 21 9 7 23 23 C 1.38078 * 119.91637 * 179.78797 * 22 21 9 24 24 C 1.38315 * 120.07999 * 0.47056 * 23 22 21 25 25 C 1.38307 * 120.16585 * 359.78234 * 24 23 22 26 26 C 1.38082 * 120.07843 * 359.97438 * 25 24 23 27 27 H 0.97005 * 119.99723 * 4.94433 * 1 2 3 28 28 H 1.07993 * 119.99746 * 354.75586 * 12 10 9 29 29 H 1.07998 * 120.00034 * 5.21586 * 13 12 10 30 30 H 1.08004 * 120.49976 * 359.95686 * 15 14 13 31 31 H 1.08001 * 119.52504 * 180.27656 * 16 15 14 32 32 H 1.07997 * 120.51990 * 179.97438 * 20 18 17 33 33 H 1.07999 * 120.03874 * 0.02562 * 22 21 9 34 34 H 1.07997 * 119.95695 * 180.23053 * 23 22 21 35 35 H 1.08000 * 119.91336 * 179.76346 * 24 23 22 36 36 H 1.07995 * 119.96534 * 179.97438 * 25 24 23 37 37 H 1.08002 * 120.03707 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4946 2.0464 -1.4001 5 1 1.4444 2.6527 0.6999 6 1 3.5446 1.4402 0.7001 7 6 2.0085 -1.2047 0.0005 8 1 3.0090 -1.2505 0.4049 9 7 1.4258 -2.3305 -0.5108 10 6 0.8129 -2.2867 -1.7105 11 8 0.7152 -1.2294 -2.3058 12 6 0.2649 -3.5104 -2.2974 13 6 -0.4402 -3.4505 -3.4456 14 6 -1.0886 -4.6622 -3.9758 15 6 -0.9142 -5.9057 -3.3510 16 6 -1.5405 -7.0139 -3.8813 17 7 -2.2947 -6.9161 -4.9594 18 6 -2.4865 -5.7669 -5.5795 19 17 -3.4929 -5.7142 -6.9930 20 6 -1.8980 -4.6051 -5.1181 21 6 1.4655 -3.5263 0.2098 22 6 0.4888 -3.7997 1.1602 23 6 0.5289 -4.9848 1.8676 24 6 1.5447 -5.8951 1.6382 25 6 2.5213 -5.6242 0.6970 26 6 2.4849 -4.4433 -0.0178 27 1 -0.4850 0.8370 -0.0724 28 1 0.4251 -4.4612 -1.8111 29 1 -0.5293 -2.5141 -3.9763 30 1 -0.2985 -5.9939 -2.4680 31 1 -1.4157 -7.9749 -3.4044 32 1 -2.0587 -3.6680 -5.6303 33 1 -0.3025 -3.0877 1.3424 34 1 -0.2318 -5.1996 2.6035 35 1 1.5756 -6.8195 2.1958 36 1 3.3132 -6.3370 0.5209 37 1 3.2480 -4.2322 -0.7523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179076033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:47 Heat of formation + Delta-G solvation = 53.929047 kcal Electronic energy + Delta-G solvation = -24176.285254 eV Core-core repulsion = 20524.406476 eV Total energy + Delta-G solvation = -3651.878778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.24368 -39.50167 -37.70996 -36.75972 -34.90095 -34.08962 -32.21758 -31.25762 -30.47077 -30.25326 -28.80204 -25.79947 -24.11206 -23.60568 -22.23208 -22.06332 -20.87737 -18.89528 -17.65109 -17.39287 -16.61273 -16.26507 -15.77629 -15.58632 -15.17344 -14.55744 -14.49715 -14.27249 -14.15897 -13.90297 -13.17049 -13.08953 -12.96938 -12.89817 -12.27684 -12.12877 -11.93602 -11.63520 -11.42763 -11.36167 -11.14099 -11.05784 -10.87646 -10.69153 -10.63318 -10.33442 -9.76566 -9.11758 -8.94048 -8.75975 -8.53425 -8.47155 -8.07959 -7.51409 -6.38771 -4.12924 0.54753 0.86215 1.69922 1.76811 1.82822 2.29320 3.24016 3.30971 3.34411 3.64790 4.06528 4.20095 4.33692 4.45227 4.54335 4.77584 4.84150 4.89465 5.04153 5.08270 5.30597 5.39921 5.46053 5.49104 5.55596 5.64285 5.86064 5.90778 5.97259 6.02999 6.32029 6.39658 6.48381 6.66135 6.73520 6.82260 6.91044 7.18290 7.34348 7.47312 7.60780 8.11805 8.74526 8.89873 9.36012 9.94604 10.68036 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003683 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.680845 B = 7600.944684 C = 9498.625427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.352 4.352 8 H 0.085 0.915 9 N -0.405 5.405 10 C 0.502 3.498 11 O -0.533 6.533 12 C -0.126 4.126 13 C -0.101 4.101 14 C 0.019 3.981 15 C -0.168 4.168 16 C 0.121 3.879 17 N -0.490 5.490 18 C 0.177 3.823 19 Cl -0.038 7.038 20 C -0.149 4.149 21 C 0.159 3.841 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.134 4.134 27 H 0.270 0.730 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -12.991 -3.557 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.128 4.128 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.103 0.897 9 N -0.124 5.124 10 C 0.293 3.707 11 O -0.412 6.412 12 C -0.149 4.149 13 C -0.121 4.121 14 C 0.011 3.989 15 C -0.188 4.188 16 C -0.035 4.035 17 N -0.202 5.202 18 C 0.013 3.987 19 Cl -0.010 7.010 20 C -0.170 4.170 21 C 0.068 3.932 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.159 4.159 25 C -0.137 4.137 26 C -0.154 4.154 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.166 0.834 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.509 -13.026 -4.237 13.926 hybrid contribution 0.581 1.463 0.385 1.620 sum -1.929 -11.564 -3.852 12.340 Atomic orbital electron populations 1.69878 1.06943 1.28713 1.39873 1.25286 0.94653 0.99863 0.93046 0.86239 0.79663 0.81790 0.78688 1.19842 1.21150 1.19518 1.19056 0.98129 0.85280 1.45154 0.89725 1.40789 1.51206 1.06447 1.13922 1.17933 0.83383 0.87994 0.81423 1.90660 1.58218 1.31182 1.61141 1.23588 0.96189 0.99296 0.95781 1.22009 0.97286 0.96004 0.96824 1.19470 0.93239 0.93830 0.92393 1.22540 1.01690 0.92697 1.01887 1.22527 0.91472 0.98969 0.90510 1.66881 1.17066 1.26871 1.09419 1.21443 0.95300 0.90433 0.91492 1.98395 1.67164 1.98308 1.37135 1.22016 0.98761 0.98751 0.97425 1.18262 0.93555 0.87457 0.93889 1.21638 0.99076 0.96658 0.95946 1.21020 0.98641 0.94262 0.99677 1.21007 0.95876 0.99567 0.99446 1.20921 0.98863 0.96932 0.96946 1.21462 0.98445 0.94419 1.01066 0.92002 0.86357 0.84275 0.83647 0.81733 0.83441 0.85511 0.86570 0.86794 0.86565 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.04 12.50 55.50 0.69 -22.35 16 2 C 0.08 2.27 4.14 -17.46 -0.07 2.20 16 3 Si 0.91 21.06 29.63 -169.99 -5.04 16.02 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.35 -9.29 9.06 -15.06 -0.14 -9.43 16 8 H 0.09 2.19 7.95 -52.48 -0.42 1.77 16 9 N -0.41 -9.71 2.48 -60.47 -0.15 -9.86 16 10 C 0.50 12.08 7.02 -12.99 -0.09 11.99 16 11 O -0.53 -14.79 14.39 5.17 0.07 -14.72 16 12 C -0.13 -2.36 8.73 -37.51 -0.33 -2.69 16 13 C -0.10 -1.69 9.50 -37.09 -0.35 -2.04 16 14 C 0.02 0.27 5.90 -104.75 -0.62 -0.35 16 15 C -0.17 -2.08 9.49 -38.95 -0.37 -2.45 16 16 C 0.12 1.40 11.17 -17.63 -0.20 1.20 16 17 N -0.49 -6.63 10.32 -10.46 -0.11 -6.74 16 18 C 0.18 2.36 7.27 -17.51 -0.13 2.23 16 19 Cl -0.04 -0.46 29.10 -51.86 -1.51 -1.97 16 20 C -0.15 -1.96 9.67 -38.90 -0.38 -2.34 16 21 C 0.16 3.17 3.51 -83.73 -0.29 2.87 16 22 C -0.11 -2.11 9.97 -39.36 -0.39 -2.51 16 23 C -0.12 -1.73 10.04 -39.61 -0.40 -2.13 16 24 C -0.14 -1.85 10.04 -39.53 -0.40 -2.25 16 25 C -0.12 -1.61 10.04 -39.61 -0.40 -2.01 16 26 C -0.13 -2.24 9.64 -39.36 -0.38 -2.62 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.12 1.93 4.97 -52.49 -0.26 1.67 16 29 H 0.14 2.47 7.53 -52.49 -0.40 2.07 16 30 H 0.15 1.61 6.32 -52.48 -0.33 1.28 16 31 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -31.04 346.40 -9.24 -40.28 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.50 Total: 4.43 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.93 Total: -10.32 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.95 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.07 Total: -14.72 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.04 -9.24 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179076033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.209 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds