Wall clock time and date at job start Tue Mar 31 2020 15:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99248 * 3 2 1 5 5 H 1.48493 * 109.47568 * 29.99532 * 3 2 1 6 6 H 1.48507 * 109.47045 * 149.99986 * 3 2 1 7 7 C 1.39101 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00107 * 205.61343 * 7 2 1 9 9 N 1.36701 * 119.99882 * 25.61875 * 7 2 1 10 10 C 1.34785 * 120.00172 * 47.58711 * 9 7 2 11 11 O 1.21726 * 119.99780 * 356.04877 * 10 9 7 12 12 C 1.46363 * 119.99976 * 176.04560 * 10 9 7 13 13 C 1.34868 * 119.99764 * 174.75590 * 12 10 9 14 14 C 1.47301 * 119.99837 * 185.20669 * 13 12 10 15 15 C 1.40251 * 120.94870 * 355.81924 * 14 13 12 16 16 C 1.37904 * 118.99762 * 179.97438 * 15 14 13 17 17 N 1.31937 * 120.94712 * 359.97438 * 16 15 14 18 18 C 1.31984 * 122.11044 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.55378 * 180.02562 * 18 17 16 20 20 C 1.38166 * 120.88843 * 359.97438 * 18 17 16 21 21 C 1.39669 * 119.99997 * 227.58473 * 9 7 2 22 22 C 1.38995 * 120.07956 * 86.56814 * 21 9 7 23 23 C 1.38078 * 119.91637 * 179.78797 * 22 21 9 24 24 C 1.38315 * 120.07999 * 0.47056 * 23 22 21 25 25 C 1.38307 * 120.16585 * 359.78234 * 24 23 22 26 26 C 1.38082 * 120.07843 * 359.97438 * 25 24 23 27 27 H 0.97005 * 119.99723 * 4.94433 * 1 2 3 28 28 H 1.07993 * 119.99746 * 354.75586 * 12 10 9 29 29 H 1.07998 * 120.00034 * 5.21586 * 13 12 10 30 30 H 1.08004 * 120.49976 * 359.95686 * 15 14 13 31 31 H 1.08001 * 119.52504 * 180.27656 * 16 15 14 32 32 H 1.07997 * 120.51990 * 179.97438 * 20 18 17 33 33 H 1.07999 * 120.03874 * 0.02562 * 22 21 9 34 34 H 1.07997 * 119.95695 * 180.23053 * 23 22 21 35 35 H 1.08000 * 119.91336 * 179.76346 * 24 23 22 36 36 H 1.07995 * 119.96534 * 179.97438 * 25 24 23 37 37 H 1.08002 * 120.03707 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4946 2.0464 -1.4001 5 1 1.4444 2.6527 0.6999 6 1 3.5446 1.4402 0.7001 7 6 2.0085 -1.2047 0.0005 8 1 3.0090 -1.2505 0.4049 9 7 1.4258 -2.3305 -0.5108 10 6 0.8129 -2.2867 -1.7105 11 8 0.7152 -1.2294 -2.3058 12 6 0.2649 -3.5104 -2.2974 13 6 -0.4402 -3.4505 -3.4456 14 6 -1.0886 -4.6622 -3.9758 15 6 -0.9142 -5.9057 -3.3510 16 6 -1.5405 -7.0139 -3.8813 17 7 -2.2947 -6.9161 -4.9594 18 6 -2.4865 -5.7669 -5.5795 19 17 -3.4929 -5.7142 -6.9930 20 6 -1.8980 -4.6051 -5.1181 21 6 1.4655 -3.5263 0.2098 22 6 0.4888 -3.7997 1.1602 23 6 0.5289 -4.9848 1.8676 24 6 1.5447 -5.8951 1.6382 25 6 2.5213 -5.6242 0.6970 26 6 2.4849 -4.4433 -0.0178 27 1 -0.4850 0.8370 -0.0724 28 1 0.4251 -4.4612 -1.8111 29 1 -0.5293 -2.5141 -3.9763 30 1 -0.2985 -5.9939 -2.4680 31 1 -1.4157 -7.9749 -3.4044 32 1 -2.0587 -3.6680 -5.6303 33 1 -0.3025 -3.0877 1.3424 34 1 -0.2318 -5.1996 2.6035 35 1 1.5756 -6.8195 2.1958 36 1 3.3132 -6.3370 0.5209 37 1 3.2480 -4.2322 -0.7523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179076033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:46 Heat of formation + Delta-G solvation = 37.114465 kcal Electronic energy + Delta-G solvation = -24177.014389 eV Core-core repulsion = 20524.406476 eV Total energy + Delta-G solvation = -3652.607913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35451 -40.98159 -39.20546 -37.74332 -36.39786 -35.60052 -34.06682 -32.31142 -31.69874 -31.53057 -30.23248 -27.50314 -25.55393 -24.64452 -23.58986 -23.29339 -22.28498 -20.42008 -19.25912 -18.77063 -17.85735 -17.45083 -17.01322 -16.86015 -16.71486 -16.05367 -15.93585 -15.57267 -15.49758 -15.02126 -14.73210 -14.53829 -14.38499 -14.17225 -13.59246 -13.55589 -13.24452 -13.07502 -12.91686 -12.80641 -12.55756 -12.38491 -12.30390 -12.11801 -11.95368 -11.92527 -10.87615 -10.78076 -10.55494 -10.09771 -9.83155 -9.73956 -9.55596 -9.31116 -8.37249 -6.16300 -0.65018 -0.12545 0.51945 0.59768 0.71467 0.97638 1.34733 1.43815 1.47350 2.24898 2.53512 2.71231 2.94289 3.01804 3.15165 3.38712 3.54572 3.79790 3.86621 3.87954 4.17000 4.21144 4.25745 4.34141 4.40846 4.54951 4.70534 4.73577 4.80747 4.81970 4.98765 5.26070 5.32943 5.37694 5.40201 5.42126 5.63256 5.71015 5.85384 6.09245 6.25431 6.61956 6.85340 7.04444 7.49912 8.12478 8.69161 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003683 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.680845 B = 7600.944684 C = 9498.625427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.372 4.372 8 H 0.080 0.920 9 N -0.416 5.416 10 C 0.492 3.508 11 O -0.589 6.589 12 C -0.149 4.149 13 C -0.068 4.068 14 C -0.003 4.003 15 C -0.156 4.156 16 C 0.128 3.872 17 N -0.500 5.500 18 C 0.166 3.834 19 Cl -0.029 7.029 20 C -0.147 4.147 21 C 0.124 3.876 22 C -0.137 4.137 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.102 4.102 26 C -0.140 4.140 27 H 0.265 0.735 28 H 0.145 0.855 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.206 0.794 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -17.117 -2.886 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.168 4.168 3 Si 0.788 3.212 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.498 4.498 8 H 0.098 0.902 9 N -0.133 5.133 10 C 0.284 3.716 11 O -0.472 6.472 12 C -0.170 4.170 13 C -0.089 4.089 14 C -0.011 4.011 15 C -0.176 4.176 16 C -0.028 4.028 17 N -0.212 5.212 18 C 0.003 3.997 19 Cl 0.000 7.000 20 C -0.168 4.168 21 C 0.034 3.966 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.159 4.159 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.140 0.860 30 H 0.180 0.820 31 H 0.222 0.778 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.917 -17.187 -3.537 17.651 hybrid contribution 0.353 2.474 0.087 2.501 sum -1.563 -14.713 -3.450 15.192 Atomic orbital electron populations 1.69968 1.08240 1.28816 1.42507 1.26053 0.95252 1.02710 0.92827 0.85411 0.79407 0.78499 0.77865 1.21330 1.20366 1.17617 1.19221 0.98352 0.87050 1.45170 0.90201 1.40849 1.50791 1.07373 1.14329 1.18743 0.82387 0.89029 0.81402 1.90600 1.60388 1.33536 1.62725 1.23246 0.98780 0.97999 0.96993 1.22055 0.94891 0.96645 0.95277 1.19334 0.94572 0.93527 0.93642 1.22771 1.01046 0.91966 1.01792 1.23160 0.89906 1.00186 0.89553 1.66983 1.17320 1.26836 1.10024 1.21550 0.95707 0.90433 0.92050 1.98398 1.66803 1.98302 1.36519 1.22126 0.98175 0.99403 0.97054 1.18422 0.95842 0.87246 0.95091 1.21453 0.98620 0.98076 0.97475 1.21290 0.99783 0.92658 0.99032 1.21502 0.93861 1.00198 0.98254 1.21343 0.99547 0.95790 0.95337 1.21497 0.97448 0.95139 1.01817 0.92578 0.83725 0.86016 0.82016 0.77772 0.82590 0.89244 0.83957 0.82245 0.82559 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.56 12.50 21.69 0.27 -51.28 16 2 C 0.04 2.27 4.14 84.98 0.35 2.62 16 3 Si 0.96 45.33 29.63 68.60 2.03 47.36 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.37 -20.82 9.06 84.14 0.76 -20.05 16 8 H 0.08 4.36 7.95 -2.91 -0.02 4.34 16 9 N -0.42 -21.05 2.48 -463.42 -1.15 -22.20 16 10 C 0.49 25.12 7.02 86.36 0.61 25.72 16 11 O -0.59 -35.09 14.39 -4.43 -0.06 -35.15 16 12 C -0.15 -5.70 8.73 23.61 0.21 -5.50 16 13 C -0.07 -2.34 9.50 23.88 0.23 -2.11 16 14 C 0.00 -0.07 5.90 -19.95 -0.12 -0.19 16 15 C -0.16 -3.39 9.49 22.68 0.22 -3.18 16 16 C 0.13 2.46 11.17 84.60 0.94 3.40 16 17 N -0.50 -12.07 10.32 -187.02 -1.93 -14.00 16 18 C 0.17 4.11 7.27 84.65 0.62 4.73 16 19 Cl -0.03 -0.64 29.10 -2.72 -0.08 -0.72 16 20 C -0.15 -3.71 9.67 22.71 0.22 -3.49 16 21 C 0.12 5.02 3.51 38.25 0.13 5.15 16 22 C -0.14 -5.15 9.97 22.41 0.22 -4.93 16 23 C -0.11 -2.91 10.04 22.25 0.22 -2.69 16 24 C -0.12 -2.52 10.04 22.30 0.22 -2.29 16 25 C -0.10 -2.31 10.04 22.25 0.22 -2.09 16 26 C -0.14 -4.47 9.64 22.41 0.22 -4.25 16 27 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 28 H 0.15 4.63 4.97 -2.91 -0.01 4.62 16 29 H 0.12 4.58 7.53 -2.91 -0.02 4.56 16 30 H 0.16 2.98 6.32 -2.91 -0.02 2.96 16 31 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.09 3.97 8.06 -2.91 -0.02 3.94 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -74.32 346.40 5.46 -68.86 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.11 Total: 16.27 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 5.27 Total: -9.14 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -2.81 Total: -87.48 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -74.32 5.46 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179076033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.974 kcal (2) G-P(sol) polarization free energy of solvation -74.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds