Wall clock time and date at job start Tue Mar 31 2020 15:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34721 * 117.00052 * 2 1 4 4 O 1.21476 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47663 * 119.99820 * 180.02562 * 3 2 1 6 6 C 1.39690 * 120.13667 * 359.97438 * 5 3 2 7 7 C 1.37850 * 119.86305 * 180.02562 * 6 5 3 8 8 C 1.38546 * 120.13970 * 0.02562 * 7 6 5 9 9 Cl 1.73597 * 119.86518 * 179.97438 * 8 7 6 10 10 C 1.38502 * 120.26982 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.93040 * 179.97438 * 10 8 7 12 12 S 1.81401 * 109.47002 * 89.99626 * 11 10 8 13 13 C 1.81397 * 102.99785 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47087 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46753 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00366 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99632 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47243 * 90.00000 * 20 18 16 22 22 H 1.48505 * 109.47175 * 209.99913 * 20 18 16 23 23 H 1.48496 * 109.47465 * 329.99915 * 20 18 16 24 24 C 1.37903 * 120.13908 * 0.27164 * 10 8 7 25 25 H 1.09001 * 109.47170 * 59.99252 * 1 2 3 26 26 H 1.08997 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47122 * 299.99623 * 1 2 3 28 28 H 1.08005 * 120.06685 * 359.97438 * 6 5 3 29 29 H 1.08008 * 119.93215 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47152 * 329.99726 * 11 10 8 31 31 H 1.09001 * 109.46980 * 209.99827 * 11 10 8 32 32 H 1.09004 * 109.47371 * 299.99984 * 13 12 11 33 33 H 1.09000 * 109.47527 * 60.00229 * 13 12 11 34 34 H 1.08991 * 109.47137 * 300.00517 * 14 13 12 35 35 H 1.09000 * 109.46480 * 60.00238 * 14 13 12 36 36 H 1.09004 * 109.47426 * 299.99978 * 15 14 13 37 37 H 1.09000 * 109.47550 * 60.00271 * 15 14 13 38 38 H 0.97001 * 119.99667 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.06790 * 179.73125 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5382 1.2776 -0.0006 6 6 4.3018 0.1078 -0.0006 7 6 5.6780 0.1865 -0.0006 8 6 6.3042 1.4224 0.0000 9 17 8.0378 1.5132 0.0006 10 6 5.5527 2.5858 0.0000 11 6 6.2417 3.9261 0.0011 12 16 6.5195 4.4646 -1.7087 13 6 7.3428 6.0678 -1.5028 14 6 7.6504 6.6635 -2.8782 15 6 8.3442 8.0161 -2.7045 16 6 8.6466 8.6030 -4.0592 17 1 8.3712 8.0654 -4.9544 18 6 9.2751 9.8265 -4.1556 19 7 9.6100 10.4815 -3.0655 20 14 9.6506 10.5537 -5.8348 21 1 8.5046 11.3860 -6.2813 22 1 10.8702 11.3965 -5.7477 23 1 9.8755 9.4569 -6.8102 24 6 4.1752 2.5203 0.0051 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8148 -0.8562 0.0003 29 1 6.2695 -0.7172 -0.0010 30 1 7.1989 3.8421 0.5157 31 1 5.6159 4.6559 0.5148 32 1 6.6890 6.7439 -0.9516 33 1 8.2724 5.9307 -0.9505 34 1 8.3042 5.9874 -3.4289 35 1 6.7210 6.8007 -3.4308 36 1 7.6899 8.6920 -2.1539 37 1 9.2736 7.8794 -2.1516 38 1 10.0518 11.3424 -3.1334 39 1 3.5903 3.4282 0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180759703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:25 Heat of formation + Delta-G solvation = -88.426704 kcal Electronic energy + Delta-G solvation = -21497.272088 eV Core-core repulsion = 17942.371501 eV Total energy + Delta-G solvation = -3554.900587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00072 -39.51856 -36.94995 -36.66569 -34.45281 -33.50234 -32.01976 -31.63344 -28.41904 -27.69825 -27.15653 -24.52000 -23.45029 -22.51462 -21.14781 -20.22387 -18.17620 -17.65087 -16.85783 -16.76475 -16.45807 -16.06645 -15.81030 -15.07709 -14.62865 -14.59909 -14.32412 -14.15832 -13.83693 -13.61982 -13.21326 -13.06883 -12.65115 -12.58682 -12.43712 -12.01833 -11.85579 -11.69167 -11.65035 -11.22784 -11.12908 -10.95568 -10.90333 -10.86999 -10.55252 -9.96985 -9.79022 -9.39996 -9.31294 -9.15516 -9.01346 -8.36468 -7.45084 -6.01548 -4.03913 0.06920 0.64944 1.72061 1.77926 2.17418 2.23450 2.81479 3.25386 3.32454 3.38479 3.42533 4.10225 4.21501 4.26378 4.45763 4.63077 4.67191 4.72020 4.78232 4.93585 5.02079 5.11663 5.33417 5.34414 5.46299 5.50640 5.55194 5.63295 5.70794 5.75367 5.93507 6.12196 6.14256 6.55457 6.71704 7.01936 7.30177 7.63558 7.75661 7.97428 8.39314 9.02480 9.60222 11.09748 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.002210 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.286165 B =12664.735356 C =13865.381851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.498 6.498 5 C -0.125 4.125 6 C -0.050 4.050 7 C -0.123 4.123 8 C 0.012 3.988 9 Cl -0.043 7.043 10 C -0.067 4.067 11 C -0.060 4.060 12 S -0.258 6.258 13 C -0.074 4.074 14 C -0.095 4.095 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.025 4.025 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 -25.737 11.231 31.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.387 6.387 5 C -0.127 4.127 6 C -0.069 4.069 7 C -0.142 4.142 8 C -0.017 4.017 9 Cl -0.013 7.013 10 C -0.069 4.069 11 C -0.208 4.208 12 S -0.027 6.027 13 C -0.222 4.222 14 C -0.134 4.134 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.045 4.045 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.083 0.917 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.696 -25.770 10.355 30.967 hybrid contribution 0.518 1.199 0.265 1.333 sum -13.178 -24.572 10.620 29.836 Atomic orbital electron populations 1.23321 0.75571 1.03927 1.02892 1.86523 1.23869 1.32450 1.84364 1.21062 0.88892 0.81617 0.72930 1.90875 1.66642 1.35947 1.45213 1.19082 0.89363 0.94729 1.09478 1.21413 0.92887 0.98349 0.94225 1.21042 0.94550 0.96540 1.02075 1.21203 0.85970 0.94413 1.00142 1.98416 1.08264 1.98516 1.96120 1.19067 0.92746 0.93239 1.01856 1.22321 1.03858 0.95586 0.98993 1.87097 1.79487 1.27484 1.08676 1.23671 1.01455 0.92867 1.04232 1.21466 1.00994 0.99259 0.91644 1.19103 0.95284 0.89335 0.97399 1.21221 1.38278 1.03756 0.92597 0.92541 1.25028 0.95739 0.97078 0.96646 1.69964 1.41376 1.14718 1.27442 0.86568 0.77802 0.79139 0.84360 1.20625 1.21219 1.19823 1.21121 0.92832 0.97556 0.92966 0.91583 0.87800 0.91678 0.83397 0.83682 0.88356 0.88575 0.90414 0.90422 0.92349 0.92365 0.96422 0.96410 0.92977 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.95 9.82 -40.55 -0.40 -3.35 16 3 C 0.51 5.31 7.90 34.58 0.27 5.58 16 4 O -0.50 -6.52 16.14 -19.25 -0.31 -6.83 16 5 C -0.13 -1.21 5.87 -104.98 -0.62 -1.82 16 6 C -0.05 -0.37 9.61 -39.18 -0.38 -0.75 16 7 C -0.12 -0.96 9.81 -39.61 -0.39 -1.35 16 8 C 0.01 0.11 6.32 -39.37 -0.25 -0.13 16 9 Cl -0.04 -0.44 27.27 -51.86 -1.41 -1.86 16 10 C -0.07 -0.73 5.14 -104.65 -0.54 -1.26 16 11 C -0.06 -0.71 5.66 36.01 0.20 -0.50 16 12 S -0.26 -3.94 21.72 -107.50 -2.33 -6.27 16 13 C -0.07 -1.27 5.94 37.16 0.22 -1.05 16 14 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 15 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 16 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.02 -0.26 9.24 -39.18 -0.36 -0.62 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.15 0.77 7.61 -52.48 -0.40 0.37 16 29 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.10 1.11 6.89 -51.92 -0.36 0.75 16 31 H 0.10 1.01 8.08 -51.92 -0.42 0.59 16 32 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.15 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -32.26 367.45 -10.00 -42.26 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.35 Total: -4.32 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.45 Total: -15.78 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.71 Total: -10.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.33 Total: -6.27 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.41 Total: -1.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.26 -10.00 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180759703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.165 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds