Wall clock time and date at job start Tue Mar 31 2020 15:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34721 * 117.00052 * 2 1 4 4 O 1.21476 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47663 * 119.99820 * 180.02562 * 3 2 1 6 6 C 1.39690 * 120.13667 * 359.97438 * 5 3 2 7 7 C 1.37850 * 119.86305 * 180.02562 * 6 5 3 8 8 C 1.38546 * 120.13970 * 0.02562 * 7 6 5 9 9 Cl 1.73597 * 119.86518 * 179.97438 * 8 7 6 10 10 C 1.38502 * 120.26982 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.93040 * 179.97438 * 10 8 7 12 12 S 1.81401 * 109.47002 * 89.99626 * 11 10 8 13 13 C 1.81397 * 102.99785 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47087 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46753 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00366 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99543 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99632 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47243 * 90.00000 * 20 18 16 22 22 H 1.48505 * 109.47175 * 209.99913 * 20 18 16 23 23 H 1.48496 * 109.47465 * 329.99915 * 20 18 16 24 24 C 1.37903 * 120.13908 * 0.27164 * 10 8 7 25 25 H 1.09001 * 109.47170 * 59.99252 * 1 2 3 26 26 H 1.08997 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47122 * 299.99623 * 1 2 3 28 28 H 1.08005 * 120.06685 * 359.97438 * 6 5 3 29 29 H 1.08008 * 119.93215 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47152 * 329.99726 * 11 10 8 31 31 H 1.09001 * 109.46980 * 209.99827 * 11 10 8 32 32 H 1.09004 * 109.47371 * 299.99984 * 13 12 11 33 33 H 1.09000 * 109.47527 * 60.00229 * 13 12 11 34 34 H 1.08991 * 109.47137 * 300.00517 * 14 13 12 35 35 H 1.09000 * 109.46480 * 60.00238 * 14 13 12 36 36 H 1.09004 * 109.47426 * 299.99978 * 15 14 13 37 37 H 1.09000 * 109.47550 * 60.00271 * 15 14 13 38 38 H 0.97001 * 119.99667 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.06790 * 179.73125 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5382 1.2776 -0.0006 6 6 4.3018 0.1078 -0.0006 7 6 5.6780 0.1865 -0.0006 8 6 6.3042 1.4224 0.0000 9 17 8.0378 1.5132 0.0006 10 6 5.5527 2.5858 0.0000 11 6 6.2417 3.9261 0.0011 12 16 6.5195 4.4646 -1.7087 13 6 7.3428 6.0678 -1.5028 14 6 7.6504 6.6635 -2.8782 15 6 8.3442 8.0161 -2.7045 16 6 8.6466 8.6030 -4.0592 17 1 8.3712 8.0654 -4.9544 18 6 9.2751 9.8265 -4.1556 19 7 9.6100 10.4815 -3.0655 20 14 9.6506 10.5537 -5.8348 21 1 8.5046 11.3860 -6.2813 22 1 10.8702 11.3965 -5.7477 23 1 9.8755 9.4569 -6.8102 24 6 4.1752 2.5203 0.0051 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8148 -0.8562 0.0003 29 1 6.2695 -0.7172 -0.0010 30 1 7.1989 3.8421 0.5157 31 1 5.6159 4.6559 0.5148 32 1 6.6890 6.7439 -0.9516 33 1 8.2724 5.9307 -0.9505 34 1 8.3042 5.9874 -3.4289 35 1 6.7210 6.8007 -3.4308 36 1 7.6899 8.6920 -2.1539 37 1 9.2736 7.8794 -2.1516 38 1 10.0518 11.3424 -3.1334 39 1 3.5903 3.4282 0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180759703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:24 Heat of formation + Delta-G solvation = -103.898327 kcal Electronic energy + Delta-G solvation = -21497.942988 eV Core-core repulsion = 17942.371501 eV Total energy + Delta-G solvation = -3555.571487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74466 -40.24792 -37.69470 -37.44020 -36.36907 -34.28707 -34.05074 -32.35120 -29.50908 -28.96986 -28.11313 -25.37157 -25.21793 -23.31247 -22.19062 -21.72723 -18.95574 -18.54190 -18.36817 -17.57524 -17.46255 -17.07560 -16.84534 -16.56505 -16.17722 -15.82190 -15.36266 -14.82721 -14.58015 -14.52173 -14.41169 -14.20036 -14.10057 -13.61384 -13.48564 -13.26751 -13.07599 -12.78668 -12.75097 -12.63692 -12.58600 -12.37583 -11.90198 -11.85435 -11.74324 -11.66167 -11.51158 -11.24570 -10.92380 -10.57061 -10.11646 -9.89506 -8.67373 -8.21937 -6.32839 -0.68104 -0.13897 0.79099 0.96044 1.31377 1.39766 1.40900 1.52274 1.56965 1.62185 2.40326 2.51712 3.11308 3.31580 3.52496 3.56337 3.87357 4.00017 4.03528 4.09306 4.22863 4.25368 4.31695 4.34109 4.51263 4.58532 4.70431 4.73937 4.81204 4.88228 4.96641 5.00966 5.04865 5.12611 5.23274 5.45740 5.48075 5.67440 5.81342 6.21575 6.56198 6.82617 7.36148 8.89699 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.002210 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.286165 B =12664.735356 C =13865.381851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.534 6.534 5 C -0.136 4.136 6 C -0.031 4.031 7 C -0.116 4.116 8 C 0.005 3.995 9 Cl -0.049 7.049 10 C -0.082 4.082 11 C -0.048 4.048 12 S -0.274 6.274 13 C -0.069 4.069 14 C -0.080 4.080 15 C 0.031 3.969 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.032 4.032 25 H 0.061 0.939 26 H 0.138 0.862 27 H 0.063 0.937 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.054 0.946 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 -28.119 10.958 33.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.359 3.641 4 O -0.425 6.425 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.134 4.134 8 C -0.024 4.024 9 Cl -0.020 7.020 10 C -0.084 4.084 11 C -0.195 4.195 12 S -0.044 6.044 13 C -0.217 4.217 14 C -0.119 4.119 15 C -0.008 4.008 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.052 4.052 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.082 0.918 28 H 0.196 0.804 29 H 0.192 0.808 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.073 0.927 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.252 -28.171 10.077 33.140 hybrid contribution 0.599 1.793 0.428 1.939 sum -13.653 -26.378 10.506 31.505 Atomic orbital electron populations 1.23628 0.74031 1.06135 1.02647 1.86513 1.25350 1.31098 1.83717 1.21222 0.89167 0.81718 0.72016 1.90860 1.67414 1.37175 1.47075 1.19168 0.89277 0.95181 1.10089 1.21735 0.92662 0.98746 0.91837 1.21380 0.94808 0.96676 1.00533 1.21386 0.85645 0.95012 1.00311 1.98417 1.08849 1.98554 1.96171 1.18962 0.92839 0.92970 1.03657 1.22334 1.04584 0.96563 0.96028 1.87061 1.79084 1.25796 1.12473 1.23381 1.02155 0.94396 1.01774 1.21159 1.00031 0.96810 0.93914 1.18978 0.94334 0.91587 0.95871 1.21660 1.38527 1.04391 0.93719 0.92362 1.25970 0.95418 0.97533 1.00861 1.70086 1.42010 1.15198 1.29818 0.85445 0.77853 0.78424 0.79327 1.19737 1.20554 1.18881 1.21085 0.92754 0.97929 0.93470 0.92063 0.84349 0.91797 0.80427 0.80813 0.87806 0.87565 0.90019 0.90058 0.92675 0.92736 0.98504 0.98435 0.92693 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.10 9.82 -56.31 -0.55 -5.65 16 3 C 0.51 10.14 7.90 70.31 0.56 10.70 16 4 O -0.53 -14.01 16.14 19.92 0.32 -13.68 16 5 C -0.14 -2.41 5.87 -20.10 -0.12 -2.53 16 6 C -0.03 -0.37 9.61 22.53 0.22 -0.15 16 7 C -0.12 -1.44 9.81 22.25 0.22 -1.22 16 8 C 0.01 0.10 6.32 22.41 0.14 0.24 16 9 Cl -0.05 -0.95 27.27 -2.72 -0.07 -1.02 16 10 C -0.08 -1.70 5.14 -19.88 -0.10 -1.80 16 11 C -0.05 -1.10 5.66 71.24 0.40 -0.69 16 12 S -0.27 -8.31 21.72 -56.49 -1.23 -9.53 16 13 C -0.07 -2.38 5.94 71.98 0.43 -1.96 16 14 C -0.08 -3.42 5.16 30.60 0.16 -3.27 16 15 C 0.03 1.66 4.97 29.85 0.15 1.81 16 16 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 17 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 20 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 C -0.03 -0.66 9.24 22.53 0.21 -0.45 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.18 1.07 7.61 -2.91 -0.02 1.05 16 29 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 30 H 0.10 2.25 6.89 -2.39 -0.02 2.24 16 31 H 0.11 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.14 3.08 7.65 -2.91 -0.02 3.06 16 Total: -1.00 -70.44 367.45 5.98 -64.46 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.05 Total: 3.92 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.15 Total: -28.75 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.23 Total: -19.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.23 Total: -9.53 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.07 Total: -1.02 kcal Total: -70.44 5.98 -64.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180759703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.438 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds