Wall clock time and date at job start Tue Mar 31 2020 14:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35960 * 117.00068 * 2 1 4 4 C 1.38663 * 120.05979 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.96913 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.09618 * 0.02562 * 5 4 3 7 7 S 1.76197 * 119.93979 * 179.97438 * 6 5 4 8 8 O 1.42094 * 106.40348 * 228.54291 * 7 6 5 9 9 O 1.42103 * 106.40102 * 1.46769 * 7 6 5 10 10 N 1.65607 * 107.21572 * 115.00277 * 7 6 5 11 11 C 1.36939 * 119.99740 * 90.00091 * 10 7 6 12 12 H 1.08001 * 120.00107 * 8.45028 * 11 10 7 13 13 C 1.38809 * 119.99908 * 188.44575 * 11 10 7 14 14 N 1.31619 * 119.99904 * 23.57678 * 13 11 10 15 15 Si 1.86800 * 120.00089 * 203.57281 * 13 11 10 16 16 H 1.48493 * 109.47167 * 85.10431 * 15 13 11 17 17 H 1.48500 * 109.47157 * 205.10459 * 15 13 11 18 18 H 1.48502 * 109.47226 * 325.10169 * 15 13 11 19 19 C 1.46494 * 120.00289 * 270.00316 * 10 7 6 20 20 C 1.47195 * 109.47104 * 93.20219 * 19 10 7 21 21 N 5.98511 * 107.08614 * 44.80549 * 2 1 3 22 22 C 1.38259 * 120.12457 * 0.25832 * 6 5 4 23 23 C 1.50695 * 119.98836 * 179.72289 * 22 6 5 24 24 C 1.38343 * 120.02825 * 359.45001 * 22 6 5 25 25 F 1.35096 * 120.04760 * 180.27852 * 24 22 6 26 26 H 1.08999 * 109.47167 * 300.00128 * 1 2 3 27 27 H 1.09001 * 109.47113 * 59.99815 * 1 2 3 28 28 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.01820 * 359.94884 * 4 3 2 30 30 H 1.08002 * 119.95714 * 179.97438 * 5 4 3 31 31 H 0.97000 * 119.99749 * 180.02562 * 14 13 11 32 32 H 1.08994 * 109.47300 * 213.20922 * 19 10 7 33 33 H 1.09007 * 109.46723 * 333.20514 * 19 10 7 34 34 H 1.09000 * 109.47158 * 89.99388 * 23 22 6 35 35 H 1.08993 * 109.47594 * 210.00206 * 23 22 6 36 36 H 1.09008 * 109.47187 * 330.00067 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0011 6 6 3.3023 3.6778 0.0005 7 16 4.1004 5.2486 0.0005 8 8 5.0863 5.1978 -1.0214 9 8 3.0672 6.2236 0.0361 10 7 4.9191 5.3825 1.4339 11 6 6.2155 4.9510 1.5247 12 1 6.7485 4.6511 0.6345 13 6 6.8448 4.8992 2.7609 14 7 6.1280 4.8042 3.8607 15 14 8.7088 4.9643 2.8636 16 1 9.1557 6.3804 2.8572 17 1 9.1586 4.3090 4.1180 18 1 9.2939 4.2552 1.6974 19 6 4.2563 5.9623 2.6046 20 6 3.6541 4.8874 3.4100 21 7 3.1874 4.0590 4.0316 22 6 4.0579 2.5200 -0.0059 23 6 5.5626 2.6026 -0.0128 24 6 3.4333 1.2856 -0.0004 25 9 4.1713 0.1540 -0.0010 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2136 2.3201 0.0001 30 1 1.3341 4.5116 0.0011 31 1 6.5677 4.7683 4.7245 32 1 4.9880 6.5010 3.2066 33 1 3.4774 6.6510 2.2772 34 1 5.9302 2.6200 1.0132 35 1 5.9717 1.7352 -0.5307 36 1 5.8742 3.5125 -0.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181671951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:29 Heat of formation + Delta-G solvation = -96.293797 kcal Electronic energy + Delta-G solvation = -27037.574606 eV Core-core repulsion = 22950.456157 eV Total energy + Delta-G solvation = -4087.118448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.96348 -41.15672 -38.87599 -38.41690 -37.93394 -36.42984 -36.23683 -33.58732 -33.39160 -31.51992 -29.32948 -28.64941 -27.62083 -25.84067 -24.07341 -22.80446 -20.44852 -19.80973 -19.47616 -18.77301 -18.45926 -18.10749 -17.83025 -17.35910 -16.78926 -16.35719 -16.24801 -16.12050 -15.86729 -15.37496 -14.90862 -14.75036 -14.51052 -14.40804 -13.98785 -13.95496 -13.56739 -13.51094 -13.32728 -13.12227 -12.99681 -12.92707 -12.79254 -12.58706 -12.46311 -12.25413 -12.11023 -12.07307 -11.93291 -11.73182 -11.61465 -11.20784 -10.19746 -9.87167 -9.58438 -8.44138 -5.84688 -0.34158 -0.09149 -0.02172 1.58542 1.64412 1.71329 1.92542 1.97629 2.21508 2.34937 2.43961 2.78766 2.89008 3.07520 3.17217 3.49832 3.67507 3.72623 3.85219 4.05318 4.12353 4.27613 4.27710 4.41601 4.49551 4.60118 4.70378 4.78578 4.82356 4.89986 4.92593 5.08109 5.23961 5.30915 5.48186 5.51588 6.08845 6.33433 6.74418 7.14850 7.15871 8.54100 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.005592 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.249097 B = 5006.363741 C = 5321.695084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.007 4.007 6 C -0.702 4.702 7 S 2.561 3.439 8 O -0.991 6.991 9 O -0.999 6.999 10 N -0.803 5.803 11 C -0.266 4.266 12 H 0.132 0.868 13 C 0.009 3.991 14 N -0.857 5.857 15 Si 0.986 3.014 16 H -0.261 1.261 17 H -0.290 1.290 18 H -0.260 1.260 19 C 0.225 3.775 20 C 0.256 3.744 21 N -0.514 5.514 22 C 0.017 3.983 23 C -0.165 4.165 24 C 0.007 3.993 25 F -0.141 7.141 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.178 0.822 30 H 0.160 0.840 31 H 0.282 0.718 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -1.621 -4.063 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.026 4.026 6 C -0.782 4.782 7 S 2.660 3.340 8 O -0.981 6.981 9 O -0.989 6.989 10 N -0.627 5.627 11 C -0.412 4.412 12 H 0.150 0.850 13 C -0.200 4.200 14 N -0.497 5.497 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.216 1.216 18 H -0.184 1.184 19 C 0.096 3.904 20 C -0.062 4.062 21 N -0.195 5.195 22 C 0.015 3.985 23 C -0.221 4.221 24 C -0.013 4.013 25 F -0.120 7.120 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.195 0.805 30 H 0.177 0.823 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.812 -2.507 -3.827 8.206 hybrid contribution 0.605 -1.071 0.418 1.299 sum -6.208 -3.578 -3.409 7.935 Atomic orbital electron populations 1.23558 0.75107 1.06438 1.03058 1.86118 1.24751 1.25338 1.87801 1.19229 0.90411 0.86646 0.95115 1.21535 1.01889 0.90402 1.08941 1.21091 0.92460 0.99123 0.89942 1.31951 1.05354 1.23850 1.17013 1.10231 0.72081 0.74995 0.76654 1.93301 1.58933 1.87201 1.58671 1.93328 1.58350 1.59561 1.87635 1.55133 1.16742 1.64446 1.26349 1.20465 0.82866 1.41486 0.96344 0.85043 1.26127 1.04365 0.95265 0.94284 1.69955 1.37885 1.42444 0.99403 0.85006 0.76804 0.79443 0.77865 1.18579 1.21568 1.18432 1.19258 0.97565 0.88589 0.85013 1.29916 0.88892 0.94576 0.92827 1.80866 1.16158 1.11076 1.11394 1.19553 0.97610 0.89890 0.91466 1.21840 0.88781 1.06363 1.05149 1.17164 0.87024 0.82687 1.14439 1.91409 1.76776 1.48955 1.94854 0.91336 0.90440 0.85377 0.80479 0.82250 0.90705 0.84005 0.85447 0.88575 0.90067 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -9.90 10.36 -93.11 -0.96 -10.87 16 3 C 0.13 4.65 6.69 22.53 0.15 4.80 16 4 C -0.21 -6.38 9.04 22.36 0.20 -6.18 16 5 C -0.01 -0.25 9.54 22.26 0.21 -0.03 16 6 C -0.70 -28.17 5.91 22.28 0.13 -28.04 16 7 S 2.56 105.74 5.17 -56.49 -0.29 105.44 16 8 O -0.99 -44.52 14.39 -128.00 -1.84 -46.36 16 9 O -1.00 -41.50 15.53 -128.00 -1.99 -43.48 16 10 N -0.80 -32.75 2.88 -352.53 -1.02 -33.76 16 11 C -0.27 -11.08 6.80 84.03 0.57 -10.51 16 12 H 0.13 5.42 5.54 -2.91 -0.02 5.40 16 13 C 0.01 0.38 4.94 84.86 0.42 0.80 16 14 N -0.86 -36.96 8.89 21.65 0.19 -36.77 16 15 Si 0.99 33.68 29.61 68.60 2.03 35.71 16 16 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 17 H -0.29 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 19 C 0.23 8.42 5.45 84.57 0.46 8.88 16 20 C 0.26 10.91 13.24 89.44 1.18 12.10 16 21 N -0.51 -23.96 18.54 20.00 0.37 -23.59 16 22 C 0.02 0.69 5.88 -19.84 -0.12 0.58 16 23 C -0.17 -6.54 7.83 71.23 0.56 -5.98 16 24 C 0.01 0.29 7.25 22.45 0.16 0.45 16 25 F -0.14 -5.70 16.33 44.97 0.73 -4.97 16 26 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 27 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 28 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.18 3.78 6.30 -2.91 -0.02 3.76 16 30 H 0.16 4.91 7.33 -2.91 -0.02 4.89 16 31 H 0.28 11.83 8.31 -92.71 -0.77 11.06 16 32 H 0.14 5.09 6.48 -2.39 -0.02 5.08 16 33 H 0.13 4.06 6.95 -2.38 -0.02 4.04 16 34 H 0.10 3.96 6.73 -2.39 -0.02 3.94 16 35 H 0.08 2.89 7.64 -2.39 -0.02 2.88 16 36 H 0.11 4.60 3.50 -2.38 -0.01 4.59 16 Total: -1.00 -59.99 317.65 3.44 -56.55 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 1.16 Total: 23.91 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 5.05 Total: -21.82 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -0.45 Total: -94.12 kcal Atomic # 8 Polarization: -95.92 SS G_CDS: -4.79 Total: -100.71 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.73 Total: -4.97 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 2.03 Total: 35.71 kcal Atomic # 16 Polarization: 105.74 SS G_CDS: -0.29 Total: 105.44 kcal Total: -59.99 3.44 -56.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181671951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.745 kcal (2) G-P(sol) polarization free energy of solvation -59.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds