Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20768 * 120.00144 * 2 1 4 4 C 1.50702 * 120.00581 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47846 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47353 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31813 * 119.99414 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47333 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47241 * 119.99697 * 20 18 16 23 23 H 1.48504 * 109.47209 * 239.99607 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46860 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47071 * 60.00287 * 1 2 3 28 28 H 1.08999 * 109.46772 * 59.99276 * 4 2 1 29 29 H 1.09003 * 109.46720 * 300.00500 * 4 2 1 30 30 H 1.08998 * 109.47142 * 59.99444 * 5 4 2 31 31 H 1.09011 * 109.46657 * 300.00002 * 5 4 2 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5298 -2.3504 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4157 -0.9315 -0.0004 9 7 6.8873 -3.0995 -0.0024 10 6 8.2528 -2.8456 0.0035 11 7 9.1858 -3.7500 0.0079 12 6 10.4319 -3.3269 0.0127 13 6 11.6028 -4.2756 0.0187 14 6 10.5909 -1.9898 0.0130 15 16 12.1298 -1.1316 0.0195 16 6 11.5518 0.5329 0.0158 17 1 10.4912 0.7362 0.0112 18 6 12.4573 1.5800 0.0187 19 7 13.7518 1.3318 0.0248 20 14 11.8447 3.3446 0.0140 21 1 10.3597 3.3530 0.0066 22 1 12.3381 4.0432 1.2280 23 1 12.3492 4.0405 -1.1970 24 16 8.9926 -1.2471 -0.0015 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9972 -1.8762 -0.8908 29 1 1.9972 -1.8770 0.8891 30 1 4.0278 -0.4545 0.8906 31 1 4.0284 -0.4533 -0.8894 32 1 4.2667 -2.9211 -0.8917 33 1 4.2662 -2.9230 0.8882 34 1 6.5639 -4.0140 -0.0032 35 1 11.8898 -4.5050 -1.0076 36 1 12.4431 -3.8125 0.5360 37 1 11.3225 -5.1955 0.5318 38 1 14.3863 2.0656 0.0265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184659369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = -53.641859 kcal Electronic energy + Delta-G solvation = -21958.001813 eV Core-core repulsion = 18438.946067 eV Total energy + Delta-G solvation = -3519.055745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24694 -39.65348 -38.50806 -34.86658 -34.51784 -32.79444 -31.23466 -30.48818 -28.40675 -27.04726 -25.74174 -24.16998 -22.21372 -20.92277 -19.96594 -19.51736 -18.05487 -17.59301 -16.72131 -16.51054 -16.06964 -15.68167 -15.56591 -15.21899 -15.07737 -14.46208 -14.37685 -13.83042 -13.76026 -13.17239 -12.96490 -12.73367 -12.66385 -12.27190 -12.26169 -11.96874 -11.85413 -11.76277 -11.34442 -11.25274 -11.07890 -11.05384 -10.77557 -10.54807 -10.21683 -9.99002 -9.78787 -9.51293 -9.04430 -8.72317 -8.62520 -7.77468 -6.57747 -6.47693 -4.25259 1.41708 1.65928 1.92033 2.49791 2.57477 2.89638 3.11264 3.11983 3.21076 3.39821 3.64444 3.70552 4.00952 4.36261 4.62471 4.62803 4.68278 4.85021 4.91684 4.92117 5.06344 5.09173 5.15288 5.22254 5.26880 5.29495 5.61030 5.81770 5.99598 6.08560 6.18091 6.24585 6.47517 6.52127 6.99477 7.20290 7.22043 7.36332 8.02140 8.07520 8.54099 8.91296 10.48071 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.003137 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.051567 B = 8924.237721 C =11170.909139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.349 3.651 3 O -0.452 6.452 4 C -0.172 4.172 5 C -0.101 4.101 6 C -0.129 4.129 7 C 0.501 3.499 8 O -0.502 6.502 9 N -0.617 5.617 10 C 0.187 3.813 11 N -0.477 5.477 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.252 4.252 15 S 0.147 5.853 16 C -0.555 4.555 17 H 0.089 0.911 18 C 0.082 3.918 19 N -0.863 5.863 20 Si 0.924 3.076 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.275 1.275 24 S 0.201 5.799 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.165 -9.798 -0.035 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.224 3.776 3 O -0.325 6.325 4 C -0.210 4.210 5 C -0.139 4.139 6 C -0.169 4.169 7 C 0.287 3.713 8 O -0.375 6.375 9 N -0.267 5.267 10 C -0.184 4.184 11 N -0.198 5.198 12 C -0.124 4.124 13 C -0.120 4.120 14 C -0.489 4.489 15 S 0.398 5.602 16 C -0.704 4.704 17 H 0.107 0.893 18 C -0.129 4.129 19 N -0.496 5.496 20 Si 0.748 3.252 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.200 1.200 24 S 0.445 5.555 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.653 -8.102 -0.040 22.185 hybrid contribution -1.216 0.202 -0.006 1.233 sum -21.868 -7.900 -0.046 23.252 Atomic orbital electron populations 1.22275 0.94608 1.04501 1.04787 1.24642 0.91880 0.90439 0.70626 1.90482 1.71823 1.35201 1.34959 1.22189 0.96392 0.97676 1.04719 1.21203 0.91671 0.95662 1.05408 1.21597 0.89863 1.00561 1.04918 1.20967 0.88983 0.84656 0.76741 1.90737 1.78828 1.20823 1.47159 1.42475 1.01719 1.10802 1.71684 1.23816 0.87802 0.95150 1.11651 1.65820 0.99430 1.35803 1.18754 1.19032 0.90656 0.90651 1.12082 1.20113 0.93394 0.96769 1.01760 1.28776 1.06765 1.01314 1.12014 1.83053 0.95911 0.99630 1.81643 1.23308 0.96586 0.91051 1.59439 0.89276 1.25029 0.94448 1.00509 0.92934 1.70028 1.00874 1.33696 1.45047 0.85994 0.79826 0.81040 0.78316 1.18727 1.19995 1.19999 1.85911 0.93274 1.03837 1.72512 0.90059 0.89124 0.89118 0.88191 0.88197 0.90216 0.90222 0.88266 0.88262 0.74911 0.91908 0.91060 0.91971 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.88 10.33 36.00 0.37 -0.50 16 2 C 0.35 2.71 7.27 -29.04 -0.21 2.50 16 3 O -0.45 -5.87 16.72 5.99 0.10 -5.77 16 4 C -0.17 -0.94 5.55 -27.88 -0.15 -1.09 16 5 C -0.10 -0.94 3.79 -26.74 -0.10 -1.04 16 6 C -0.13 -0.99 5.70 -27.89 -0.16 -1.15 16 7 C 0.50 6.82 7.79 -10.98 -0.09 6.73 16 8 O -0.50 -9.26 13.50 5.55 0.07 -9.18 16 9 N -0.62 -8.70 5.40 -11.78 -0.06 -8.76 16 10 C 0.19 3.60 8.40 -87.19 -0.73 2.87 16 11 N -0.48 -9.61 10.55 -9.78 -0.10 -9.72 16 12 C 0.02 0.39 6.73 -83.96 -0.57 -0.18 16 13 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 14 C -0.25 -5.92 6.67 29.47 0.20 -5.72 16 15 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 16 C -0.56 -15.41 9.26 30.81 0.29 -15.13 16 17 H 0.09 2.48 5.97 -52.49 -0.31 2.16 16 18 C 0.08 2.22 5.49 -17.49 -0.10 2.13 16 19 N -0.86 -24.12 13.22 55.47 0.73 -23.38 16 20 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 S 0.20 4.53 18.35 -107.50 -1.97 2.55 16 25 H 0.08 0.15 8.00 -51.93 -0.42 -0.27 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.08 0.93 8.06 -51.92 -0.42 0.51 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.41 4.20 8.82 -40.82 -0.36 3.84 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.28 7.14 8.32 -40.82 -0.34 6.80 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -35.37 356.10 -8.83 -44.20 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.83 Total: -1.69 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.57 Total: -41.86 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.18 Total: -14.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 8.29 SS G_CDS: -4.20 Total: 4.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.37 -8.83 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184659369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.439 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds