Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20768 * 120.00144 * 2 1 4 4 C 1.50702 * 120.00581 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47846 * 180.02562 * 4 2 1 6 6 C 1.52990 * 109.47353 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31813 * 119.99414 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47333 * 359.97438 * 20 18 16 22 22 H 1.48509 * 109.47241 * 119.99697 * 20 18 16 23 23 H 1.48504 * 109.47209 * 239.99607 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46860 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47071 * 60.00287 * 1 2 3 28 28 H 1.08999 * 109.46772 * 59.99276 * 4 2 1 29 29 H 1.09003 * 109.46720 * 300.00500 * 4 2 1 30 30 H 1.08998 * 109.47142 * 59.99444 * 5 4 2 31 31 H 1.09011 * 109.46657 * 300.00002 * 5 4 2 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5298 -2.3504 -0.0011 7 6 6.0114 -2.0751 -0.0009 8 8 6.4157 -0.9315 -0.0004 9 7 6.8873 -3.0995 -0.0024 10 6 8.2528 -2.8456 0.0035 11 7 9.1858 -3.7500 0.0079 12 6 10.4319 -3.3269 0.0127 13 6 11.6028 -4.2756 0.0187 14 6 10.5909 -1.9898 0.0130 15 16 12.1298 -1.1316 0.0195 16 6 11.5518 0.5329 0.0158 17 1 10.4912 0.7362 0.0112 18 6 12.4573 1.5800 0.0187 19 7 13.7518 1.3318 0.0248 20 14 11.8447 3.3446 0.0140 21 1 10.3597 3.3530 0.0066 22 1 12.3381 4.0432 1.2280 23 1 12.3492 4.0405 -1.1970 24 16 8.9926 -1.2471 -0.0015 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9972 -1.8762 -0.8908 29 1 1.9972 -1.8770 0.8891 30 1 4.0278 -0.4545 0.8906 31 1 4.0284 -0.4533 -0.8894 32 1 4.2667 -2.9211 -0.8917 33 1 4.2662 -2.9230 0.8882 34 1 6.5639 -4.0140 -0.0032 35 1 11.8898 -4.5050 -1.0076 36 1 12.4431 -3.8125 0.5360 37 1 11.3225 -5.1955 0.5318 38 1 14.3863 2.0656 0.0265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184659369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = -78.183751 kcal Electronic energy + Delta-G solvation = -21959.066029 eV Core-core repulsion = 18438.946067 eV Total energy + Delta-G solvation = -3520.119962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45871 -40.44398 -40.08672 -36.15182 -35.35973 -34.83447 -32.22649 -31.53755 -29.11562 -28.71027 -27.72559 -25.39143 -23.28475 -22.23505 -21.09615 -20.48443 -19.73249 -19.13468 -18.05200 -17.42670 -17.31953 -17.09483 -16.72179 -16.50361 -16.06470 -15.74256 -15.69744 -15.07542 -14.91686 -14.79624 -14.40642 -13.56987 -13.44366 -13.37903 -13.26990 -13.11789 -13.08869 -12.91532 -12.76278 -12.73597 -12.47878 -12.29103 -12.12402 -12.05678 -11.72190 -11.35107 -11.31868 -10.80469 -10.53792 -10.47840 -10.46627 -9.53300 -8.59901 -8.37276 -6.31467 -0.22163 0.23221 0.83480 1.09380 1.24924 1.25385 1.31032 1.38764 1.52847 1.70951 2.03642 2.12623 2.78987 3.07807 3.19484 3.48980 3.78033 4.04104 4.06175 4.13516 4.43311 4.51457 4.56600 4.64931 4.73116 4.73175 4.80933 4.84644 4.90743 4.97440 5.08505 5.16353 5.26532 5.28234 5.38261 5.48663 6.00289 6.02232 6.68122 6.82422 6.85404 6.92206 8.48191 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.003137 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.051567 B = 8924.237721 C =11170.909139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.345 3.655 3 O -0.521 6.521 4 C -0.164 4.164 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.496 3.504 8 O -0.551 6.551 9 N -0.603 5.603 10 C 0.230 3.770 11 N -0.482 5.482 12 C 0.038 3.962 13 C -0.062 4.062 14 C -0.284 4.284 15 S 0.099 5.901 16 C -0.575 4.575 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.894 5.894 20 Si 0.984 3.016 21 H -0.273 1.273 22 H -0.262 1.262 23 H -0.262 1.262 24 S 0.145 5.855 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.439 0.561 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.766 -12.845 -0.066 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.225 3.775 3 O -0.399 6.399 4 C -0.200 4.200 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.285 3.715 8 O -0.427 6.427 9 N -0.256 5.256 10 C -0.143 4.143 11 N -0.204 5.204 12 C -0.104 4.104 13 C -0.121 4.121 14 C -0.519 4.519 15 S 0.346 5.654 16 C -0.724 4.724 17 H 0.096 0.904 18 C -0.171 4.171 19 N -0.529 5.529 20 Si 0.805 3.195 21 H -0.197 1.197 22 H -0.186 1.186 23 H -0.186 1.186 24 S 0.389 5.611 25 H 0.135 0.865 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.281 0.719 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.323 -11.227 -0.072 26.789 hybrid contribution -0.442 0.914 0.001 1.015 sum -24.765 -10.313 -0.070 26.827 Atomic orbital electron populations 1.22302 0.91784 1.06875 1.04750 1.25501 0.93730 0.90408 0.67896 1.90480 1.73356 1.37616 1.38476 1.22253 0.92665 0.96981 1.08123 1.21152 0.95113 0.95910 1.02080 1.21749 0.84018 1.00328 1.09003 1.22391 0.91262 0.83518 0.74319 1.90747 1.79795 1.23253 1.48921 1.42722 0.99167 1.12715 1.70970 1.24210 0.90140 0.93258 1.06738 1.66054 0.99015 1.34750 1.20611 1.19733 0.92148 0.90506 1.07977 1.20246 0.91877 0.96886 1.03106 1.28573 1.05727 1.01897 1.15698 1.82818 0.97988 0.99391 1.85189 1.23465 0.96279 0.92466 1.60156 0.90426 1.25854 0.94599 1.04125 0.92557 1.70097 1.01714 1.34924 1.46165 0.85111 0.78546 0.76611 0.79187 1.19745 1.18624 1.18628 1.86195 0.94392 1.06900 1.73595 0.86466 0.89101 0.89091 0.84473 0.84482 0.93785 0.93790 0.83857 0.83854 0.71890 0.90298 0.91451 0.89349 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 10.33 71.23 0.74 -0.43 16 2 C 0.34 4.83 7.27 29.10 0.21 5.04 16 3 O -0.52 -14.17 16.72 -1.47 -0.02 -14.19 16 4 C -0.16 -1.11 5.55 29.85 0.17 -0.95 16 5 C -0.10 -1.75 3.79 30.59 0.12 -1.64 16 6 C -0.11 -1.19 5.70 29.85 0.17 -1.02 16 7 C 0.50 12.35 7.79 87.66 0.68 13.03 16 8 O -0.55 -20.52 13.50 -3.07 -0.04 -20.56 16 9 N -0.60 -15.05 5.40 -309.56 -1.67 -16.72 16 10 C 0.23 8.51 8.40 179.15 1.50 10.01 16 11 N -0.48 -18.46 10.55 -184.87 -1.95 -20.41 16 12 C 0.04 1.58 6.73 41.77 0.28 1.86 16 13 C -0.06 -2.10 10.02 71.24 0.71 -1.39 16 14 C -0.28 -13.69 6.67 67.00 0.45 -13.24 16 15 S 0.10 5.29 20.74 -56.49 -1.17 4.12 16 16 C -0.58 -33.60 9.26 67.87 0.63 -32.97 16 17 H 0.08 4.58 5.97 -2.91 -0.02 4.56 16 18 C 0.04 2.03 5.49 84.74 0.46 2.49 16 19 N -0.89 -51.70 13.22 21.59 0.29 -51.41 16 20 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 24 S 0.14 6.71 18.35 -56.49 -1.04 5.67 16 25 H 0.12 -0.16 8.00 -2.39 -0.02 -0.18 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.04 1.04 8.06 -2.39 -0.02 1.02 16 31 H 0.04 1.04 8.06 -2.38 -0.02 1.02 16 32 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.44 6.72 8.82 -92.71 -0.82 5.91 16 35 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.07 2.37 7.37 -2.39 -0.02 2.35 16 37 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 38 H 0.28 14.96 8.32 -92.71 -0.77 14.18 16 Total: -1.00 -85.96 356.10 2.82 -83.14 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 0.28 Total: 2.66 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 6.12 Total: -19.19 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -3.34 Total: -88.55 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.07 Total: -34.75 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 12.00 SS G_CDS: -2.21 Total: 9.80 kcal Total: -85.96 2.82 -83.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184659369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.955 kcal (2) G-P(sol) polarization free energy of solvation -85.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds