Wall clock time and date at job start Tue Mar 31 2020 14:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.97916 * 2 1 4 4 C 1.38703 * 119.95535 * 179.76826 * 3 2 1 5 5 O 1.35948 * 120.04450 * 180.27973 * 4 3 2 6 6 C 1.34261 * 116.99477 * 262.79044 * 5 4 3 7 7 O 1.20826 * 120.00491 * 5.68871 * 6 5 4 8 8 C 1.50703 * 119.99459 * 185.68999 * 6 5 4 9 9 S 1.80997 * 109.46974 * 180.02562 * 8 6 5 10 10 C 1.76200 * 99.99868 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00601 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31639 * 120.00128 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99975 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47117 * 90.00061 * 14 12 10 16 16 H 1.48498 * 109.47021 * 210.00017 * 14 12 10 17 17 H 1.48497 * 109.47274 * 329.99785 * 14 12 10 18 18 C 1.38742 * 119.91719 * 0.51145 * 4 3 2 19 19 C 1.50704 * 120.02481 * 179.76816 * 18 4 3 20 20 C 1.52999 * 109.47406 * 119.72233 * 19 18 4 21 21 C 1.53002 * 109.47160 * 239.72439 * 19 18 4 22 22 C 1.38118 * 119.95870 * 359.49245 * 18 4 3 23 23 C 1.38350 * 119.97896 * 180.02562 * 2 1 3 24 24 Cl 1.73595 * 119.95705 * 359.97438 * 23 2 1 25 25 H 1.09007 * 109.46582 * 269.97740 * 1 2 3 26 26 H 1.08996 * 109.46829 * 29.97104 * 1 2 3 27 27 H 1.09000 * 109.46839 * 149.97766 * 1 2 3 28 28 H 1.07994 * 120.02095 * 0.03494 * 3 2 1 29 29 H 1.09003 * 109.47378 * 299.99868 * 8 6 5 30 30 H 1.09004 * 109.47360 * 60.00143 * 8 6 5 31 31 H 0.96993 * 120.00218 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47003 * 359.72087 * 19 18 4 33 33 H 1.09001 * 109.47159 * 59.99949 * 20 19 18 34 34 H 1.09000 * 109.46965 * 300.00181 * 20 19 18 35 35 H 1.09002 * 109.47127 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46875 * 299.99726 * 21 19 18 37 37 H 1.08999 * 109.47142 * 59.99802 * 21 19 18 38 38 H 1.08997 * 109.46877 * 179.97438 * 21 19 18 39 39 H 1.07999 * 119.98303 * 180.23539 * 22 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1962 0.0049 5 8 4.2655 2.3727 0.0106 6 6 4.7049 2.8283 -1.1734 7 8 4.4019 2.2536 -2.1922 8 6 5.5763 4.0565 -1.2318 9 16 5.9998 4.4144 -2.9547 10 6 6.9927 5.8531 -2.7331 11 1 7.1673 6.2412 -1.7405 12 6 7.5504 6.4878 -3.8344 13 7 8.2925 7.5623 -3.6689 14 14 7.2489 5.8163 -5.5512 15 1 6.0286 6.4423 -6.1204 16 1 8.4148 6.1282 -6.4165 17 1 7.0639 4.3445 -5.4817 18 6 4.2759 -0.0066 -0.0010 19 6 5.7829 -0.0100 -0.0010 20 6 6.2914 -0.7325 1.2481 21 6 6.2913 -0.7324 -1.2504 22 6 3.5823 -1.2010 -0.0011 23 6 2.1983 -1.1984 -0.0005 24 17 1.3287 -2.7008 -0.0005 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6574 2.1320 0.0006 29 1 5.0386 4.9040 -0.8066 30 1 6.4888 3.8821 -0.6616 31 1 8.6819 8.0061 -4.4384 32 1 6.1486 1.0168 -0.0010 33 1 5.9257 -1.7593 1.2481 34 1 5.9292 -0.2179 2.1381 35 1 7.3814 -0.7353 1.2478 36 1 5.9257 -1.7592 -1.2504 37 1 5.9291 -0.2177 -2.1403 38 1 7.3813 -0.7344 -1.2506 39 1 4.1202 -2.1375 -0.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192504952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:15 Heat of formation + Delta-G solvation = -78.308717 kcal Electronic energy + Delta-G solvation = -23115.313270 eV Core-core repulsion = 19560.851432 eV Total energy + Delta-G solvation = -3554.461838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48443 -39.32291 -37.10141 -36.47307 -35.82326 -32.54250 -31.88232 -30.90142 -29.46485 -27.24296 -27.02247 -25.74632 -23.64763 -23.17986 -20.99252 -20.16813 -18.12107 -17.77069 -17.32330 -16.64285 -16.29536 -15.26221 -15.10038 -14.64205 -14.44160 -14.33583 -14.21543 -14.02575 -13.54598 -13.39900 -13.16089 -12.89120 -12.66607 -12.63248 -12.42141 -12.31189 -12.05434 -11.58628 -11.56222 -11.38803 -11.22621 -11.12037 -11.09692 -10.88989 -10.82201 -10.60260 -10.39801 -9.93346 -9.10545 -9.05791 -8.70950 -8.63516 -7.09392 -6.38398 -4.13665 0.66741 0.94967 1.83768 2.29736 2.36752 2.96803 3.25227 3.34758 3.41088 3.49560 4.22894 4.26925 4.40438 4.51876 4.62722 4.77289 4.88610 5.00209 5.01347 5.04773 5.20747 5.25290 5.33197 5.38831 5.50839 5.53045 5.57803 5.67284 5.69444 5.73462 5.80660 5.84180 5.93945 6.01777 6.02055 6.20907 6.25278 6.26871 6.66995 7.84330 7.94586 8.33064 9.06376 10.70591 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.003037 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.110388 B = 9217.796473 C = 9681.185960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.105 4.105 4 C 0.102 3.898 5 O -0.295 6.295 6 C 0.474 3.526 7 O -0.466 6.466 8 C -0.099 4.099 9 S -0.135 6.135 10 C -0.524 4.524 11 H 0.092 0.908 12 C 0.098 3.902 13 N -0.876 5.876 14 Si 0.855 3.145 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.236 1.236 18 C -0.069 4.069 19 C -0.060 4.060 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.034 4.034 24 Cl -0.067 7.067 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.273 0.727 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 -18.659 10.547 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.124 4.124 4 C 0.061 3.939 5 O -0.212 6.212 6 C 0.316 3.684 7 O -0.348 6.348 8 C -0.247 4.247 9 S 0.091 5.909 10 C -0.671 4.671 11 H 0.110 0.890 12 C -0.111 4.111 13 N -0.512 5.512 14 Si 0.680 3.320 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.160 1.160 18 C -0.070 4.070 19 C -0.079 4.079 20 C -0.198 4.198 21 C -0.203 4.203 22 C -0.108 4.108 23 C -0.061 4.061 24 Cl -0.038 7.038 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.751 -19.369 9.175 24.442 hybrid contribution 0.261 0.554 0.349 0.705 sum -11.490 -18.814 9.524 24.015 Atomic orbital electron populations 1.20871 0.89727 1.03780 1.03040 1.19548 0.96908 0.90578 0.99912 1.21045 0.92455 0.98363 1.00510 1.18391 0.90108 0.84031 1.01411 1.84654 1.66029 1.35320 1.35193 1.23751 0.78327 0.85600 0.80723 1.90704 1.52731 1.57025 1.34386 1.23051 1.00802 0.94796 1.06012 1.84851 1.66475 1.38340 1.01193 1.22247 1.35403 1.11127 0.98353 0.88965 1.24686 0.93368 0.93865 0.99177 1.69927 1.31383 1.18122 1.31728 0.86766 0.78964 0.82281 0.84018 1.19080 1.19710 1.15970 1.19991 0.96546 0.91395 0.99084 1.20115 0.89335 1.01690 0.96720 1.21838 1.01291 1.00074 0.96583 1.21876 1.01307 1.00031 0.97103 1.20683 0.91509 0.98319 1.00327 1.20770 0.92210 0.86759 1.06358 1.98353 1.76669 1.31897 1.96884 0.90456 0.90799 0.90620 0.84197 0.86891 0.86875 0.91746 0.89992 0.92456 0.92339 0.91807 0.92543 0.91688 0.91795 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.61 36.01 0.35 -0.63 16 2 C -0.07 -0.76 5.88 -104.61 -0.62 -1.37 16 3 C -0.11 -1.31 9.64 -39.44 -0.38 -1.69 16 4 C 0.10 1.45 4.92 -39.22 -0.19 1.26 16 5 O -0.30 -4.54 9.13 -23.69 -0.22 -4.76 16 6 C 0.47 8.39 6.94 36.01 0.25 8.64 16 7 O -0.47 -9.42 15.61 -18.75 -0.29 -9.71 16 8 C -0.10 -1.85 6.27 36.01 0.23 -1.62 16 9 S -0.13 -3.23 18.55 -107.50 -1.99 -5.23 16 10 C -0.52 -14.49 10.04 30.94 0.31 -14.18 16 11 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 12 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -25.69 13.97 55.49 0.78 -24.91 16 14 Si 0.86 20.98 27.74 -169.99 -4.71 16.26 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 18 C -0.07 -0.89 4.78 -104.48 -0.50 -1.39 16 19 C -0.06 -0.72 2.91 -91.77 -0.27 -0.99 16 20 C -0.14 -1.33 9.01 37.16 0.33 -0.99 16 21 C -0.15 -1.71 9.01 37.16 0.33 -1.38 16 22 C -0.09 -1.01 8.49 -39.57 -0.34 -1.34 16 23 C -0.03 -0.38 6.31 -39.48 -0.25 -0.63 16 24 Cl -0.07 -0.64 27.29 -51.86 -1.41 -2.05 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.96 8.14 -51.91 -0.42 1.54 16 30 H 0.11 1.95 8.14 -51.91 -0.42 1.52 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.11 6.38 -51.93 -0.33 0.78 16 33 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.14 1.30 7.10 -52.49 -0.37 0.93 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -30.58 357.19 -8.52 -39.10 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.21 Total: -0.45 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.84 Total: -13.63 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.78 Total: -24.91 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.51 Total: -14.47 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.99 Total: -5.23 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.41 Total: -2.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.58 -8.52 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192504952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.207 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds