Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46825 * 2 1 4 4 C 1.42902 * 113.99723 * 180.02562 * 3 2 1 5 5 H 1.08996 * 115.56564 * 355.68459 * 4 3 2 6 6 C 1.53073 * 117.49077 * 141.40065 * 4 3 2 7 7 C 1.52998 * 59.98419 * 107.48011 * 6 4 3 8 8 H 1.09002 * 117.49528 * 252.49079 * 7 6 4 9 9 C 1.50702 * 117.49974 * 107.50156 * 7 6 4 10 10 O 1.21289 * 119.99772 * 291.25040 * 9 7 6 11 11 N 1.34773 * 120.00128 * 111.24702 * 9 7 6 12 12 C 1.38894 * 119.99641 * 179.97438 * 11 9 7 13 13 N 1.29947 * 125.36116 * 180.02562 * 12 11 9 14 14 C 1.31594 * 117.13909 * 180.02562 * 13 12 11 15 15 C 1.50695 * 122.23339 * 179.72639 * 14 13 12 16 16 C 1.34660 * 115.53513 * 0.02562 * 14 13 12 17 17 S 1.76204 * 125.92669 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99622 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00355 * 0.02562 * 18 17 16 20 20 C 1.38429 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00106 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99981 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46953 * 90.00328 * 22 20 18 24 24 H 1.48495 * 109.47406 * 210.00270 * 22 20 18 25 25 H 1.48501 * 109.47003 * 330.00528 * 22 20 18 26 26 S 1.76137 * 125.37043 * 0.02930 * 12 11 9 27 27 H 1.08996 * 109.47174 * 60.00467 * 1 2 3 28 28 H 1.09007 * 109.46628 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47373 * 299.99845 * 1 2 3 30 30 H 1.09000 * 109.47373 * 240.00155 * 2 1 3 31 31 H 1.08996 * 109.47174 * 119.99533 * 2 1 3 32 32 H 1.08992 * 117.49470 * 359.97438 * 6 4 3 33 33 H 1.09004 * 117.52597 * 214.95250 * 6 4 3 34 34 H 0.96994 * 119.99994 * 0.02562 * 11 9 7 35 35 H 1.09005 * 109.47038 * 90.02956 * 15 14 13 36 36 H 1.09000 * 109.47570 * 210.03011 * 15 14 13 37 37 H 1.09004 * 109.47587 * 330.03067 * 15 14 13 38 38 H 0.96999 * 120.00020 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9772 0.5199 0.0730 6 6 4.0511 2.5740 -0.8478 7 6 4.0424 2.6876 0.6779 8 1 3.3582 3.4088 1.1250 9 6 5.3541 2.5040 1.3968 10 8 5.8837 1.4132 1.4232 11 7 5.9387 3.5519 2.0104 12 6 7.1474 3.3825 2.6734 13 7 7.8000 4.3167 3.2978 14 6 8.9340 3.9757 3.8719 15 6 9.7859 4.9679 4.6207 16 6 9.2854 2.6825 3.7403 17 16 10.7402 1.9346 4.3953 18 6 10.5135 0.2803 3.8328 19 1 9.6388 0.0216 3.2545 20 6 11.4569 -0.6877 4.1314 21 7 12.5247 -0.3719 4.8368 22 14 11.2162 -2.4418 3.5357 23 1 11.8404 -2.6002 2.1976 24 1 11.8529 -3.3815 4.4932 25 1 9.7641 -2.7381 3.4428 26 16 8.0371 1.8677 2.8002 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.3723 3.2199 -1.4047 33 1 5.0056 2.3668 -1.3317 34 1 5.5151 4.4242 1.9896 35 1 9.4863 4.9862 5.6686 36 1 10.8335 4.6757 4.5474 37 1 9.6543 5.9596 4.1879 38 1 13.1856 -1.0503 5.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193304287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -19.076136 kcal Electronic energy + Delta-G solvation = -22167.666952 eV Core-core repulsion = 18650.110089 eV Total energy + Delta-G solvation = -3517.556863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45489 -38.83929 -38.26331 -35.47205 -34.72752 -32.82734 -31.17740 -30.50760 -27.13886 -25.81101 -25.56706 -23.23317 -22.71786 -22.28636 -20.92613 -19.52365 -18.22260 -17.89400 -17.32282 -16.35476 -15.92810 -15.87070 -15.50247 -15.29468 -15.11038 -14.60285 -14.03589 -13.94198 -13.20800 -13.14838 -13.03511 -12.75323 -12.68153 -12.48799 -12.10659 -11.88709 -11.56195 -11.39291 -11.31283 -11.27258 -11.08851 -10.93720 -10.77844 -10.58374 -10.27033 -9.91859 -9.54498 -9.53720 -9.07387 -8.75474 -8.66334 -7.80895 -6.60602 -6.50670 -4.28270 1.35559 1.87391 2.29756 2.50374 2.68916 3.06745 3.09249 3.16186 3.25314 3.37059 3.46245 3.68274 3.97438 4.37817 4.45931 4.66325 4.74158 4.76496 4.81990 4.91105 5.03199 5.05392 5.15116 5.22807 5.38449 5.47188 5.55678 5.62023 5.76475 5.97969 6.14243 6.23444 6.45085 6.49126 6.84737 6.96437 7.17264 7.32560 7.95673 8.03680 8.51509 8.87900 10.45190 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003276 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.745047 B = 8545.051939 C =10466.160768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.356 6.356 4 C 0.057 3.943 5 H 0.128 0.872 6 C -0.152 4.152 7 C -0.188 4.188 8 H 0.135 0.865 9 C 0.537 3.463 10 O -0.508 6.508 11 N -0.609 5.609 12 C 0.187 3.813 13 N -0.474 5.474 14 C 0.019 3.981 15 C -0.061 4.061 16 C -0.251 4.251 17 S 0.149 5.851 18 C -0.556 4.556 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.265 1.265 26 S 0.199 5.801 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 4.475 -8.880 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.275 6.275 4 C -0.002 4.002 5 H 0.146 0.854 6 C -0.190 4.190 7 C -0.209 4.209 8 H 0.153 0.847 9 C 0.322 3.678 10 O -0.383 6.383 11 N -0.257 5.257 12 C -0.184 4.184 13 N -0.196 5.196 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.488 4.488 17 S 0.400 5.600 18 C -0.705 4.705 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.496 5.496 22 Si 0.749 3.251 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.189 1.189 26 S 0.443 5.557 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.663 3.602 -8.430 19.019 hybrid contribution -0.785 -0.522 -0.530 1.082 sum -17.449 3.080 -8.960 19.855 Atomic orbital electron populations 1.21758 0.93463 1.02506 1.03149 1.22607 0.95552 0.83022 1.00856 1.87801 1.18364 1.27389 1.93918 1.22644 0.82171 0.94359 1.01030 0.85403 1.23512 1.03313 1.01916 0.90257 1.22500 0.96229 1.05412 0.96789 0.84747 1.19752 0.85757 0.83535 0.78709 1.90700 1.63748 1.24732 1.59072 1.42277 1.19023 1.13471 1.50948 1.23772 0.93933 0.95842 1.04879 1.65810 1.08092 1.33625 1.12036 1.19039 0.94087 0.92353 1.06846 1.20119 0.97573 0.96154 0.98235 1.28771 1.08761 1.01469 1.09764 1.83074 1.12820 1.05060 1.59055 1.23260 1.11853 0.94268 1.41099 0.89350 1.25027 0.93843 1.00275 0.93754 1.70013 1.09441 1.35481 1.34663 0.86034 0.79360 0.80804 0.78897 1.19617 1.20261 1.18912 1.85810 1.11612 1.07647 1.50607 0.91818 0.90828 0.91762 0.92783 0.92669 0.86802 0.87103 0.74660 0.91865 0.91032 0.91916 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.45 6.53 37.16 0.24 0.69 16 3 O -0.36 -3.63 10.60 -35.23 -0.37 -4.00 16 4 C 0.06 0.58 5.96 -26.69 -0.16 0.42 16 5 H 0.13 1.39 7.45 -51.93 -0.39 1.00 16 6 C -0.15 -1.32 10.19 -26.69 -0.27 -1.59 16 7 C -0.19 -1.92 6.13 -91.77 -0.56 -2.48 16 8 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 9 C 0.54 7.69 7.57 -10.99 -0.08 7.61 16 10 O -0.51 -9.14 13.78 5.55 0.08 -9.07 16 11 N -0.61 -8.97 5.40 -11.78 -0.06 -9.04 16 12 C 0.19 3.61 8.40 -87.19 -0.73 2.88 16 13 N -0.47 -9.58 10.55 -9.78 -0.10 -9.68 16 14 C 0.02 0.41 6.73 -83.96 -0.57 -0.16 16 15 C -0.06 -1.08 10.03 36.00 0.36 -0.72 16 16 C -0.25 -5.82 6.67 29.47 0.20 -5.62 16 17 S 0.15 3.76 20.74 -107.50 -2.23 1.54 16 18 C -0.56 -15.16 9.26 30.80 0.29 -14.88 16 19 H 0.09 2.39 5.97 -52.49 -0.31 2.08 16 20 C 0.08 2.19 5.49 -17.49 -0.10 2.10 16 21 N -0.86 -23.78 13.22 55.47 0.73 -23.05 16 22 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 26 S 0.20 4.41 18.35 -107.50 -1.97 2.44 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.42 4.68 8.82 -40.82 -0.36 4.32 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -31.73 356.10 -9.40 -41.13 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.81 Total: 1.07 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.00 Total: -12.34 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.57 Total: -41.77 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.30 Total: -13.07 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 8.18 SS G_CDS: -4.20 Total: 3.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.73 -9.40 -41.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193304287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.054 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds