Wall clock time and date at job start Tue Mar 31 2020 15:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46825 * 2 1 4 4 C 1.42902 * 113.99723 * 180.02562 * 3 2 1 5 5 H 1.08996 * 115.56564 * 355.68459 * 4 3 2 6 6 C 1.53073 * 117.49077 * 141.40065 * 4 3 2 7 7 C 1.52998 * 59.98419 * 107.48011 * 6 4 3 8 8 H 1.09002 * 117.49528 * 252.49079 * 7 6 4 9 9 C 1.50702 * 117.49974 * 107.50156 * 7 6 4 10 10 O 1.21289 * 119.99772 * 291.25040 * 9 7 6 11 11 N 1.34773 * 120.00128 * 111.24702 * 9 7 6 12 12 C 1.38894 * 119.99641 * 179.97438 * 11 9 7 13 13 N 1.29947 * 125.36116 * 180.02562 * 12 11 9 14 14 C 1.31594 * 117.13909 * 180.02562 * 13 12 11 15 15 C 1.50695 * 122.23339 * 179.72639 * 14 13 12 16 16 C 1.34660 * 115.53513 * 0.02562 * 14 13 12 17 17 S 1.76204 * 125.92669 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99622 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00355 * 0.02562 * 18 17 16 20 20 C 1.38429 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00106 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99981 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46953 * 90.00328 * 22 20 18 24 24 H 1.48495 * 109.47406 * 210.00270 * 22 20 18 25 25 H 1.48501 * 109.47003 * 330.00528 * 22 20 18 26 26 S 1.76137 * 125.37043 * 0.02930 * 12 11 9 27 27 H 1.08996 * 109.47174 * 60.00467 * 1 2 3 28 28 H 1.09007 * 109.46628 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47373 * 299.99845 * 1 2 3 30 30 H 1.09000 * 109.47373 * 240.00155 * 2 1 3 31 31 H 1.08996 * 109.47174 * 119.99533 * 2 1 3 32 32 H 1.08992 * 117.49470 * 359.97438 * 6 4 3 33 33 H 1.09004 * 117.52597 * 214.95250 * 6 4 3 34 34 H 0.96994 * 119.99994 * 0.02562 * 11 9 7 35 35 H 1.09005 * 109.47038 * 90.02956 * 15 14 13 36 36 H 1.09000 * 109.47570 * 210.03011 * 15 14 13 37 37 H 1.09004 * 109.47587 * 330.03067 * 15 14 13 38 38 H 0.96999 * 120.00020 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9772 0.5199 0.0730 6 6 4.0511 2.5740 -0.8478 7 6 4.0424 2.6876 0.6779 8 1 3.3582 3.4088 1.1250 9 6 5.3541 2.5040 1.3968 10 8 5.8837 1.4132 1.4232 11 7 5.9387 3.5519 2.0104 12 6 7.1474 3.3825 2.6734 13 7 7.8000 4.3167 3.2978 14 6 8.9340 3.9757 3.8719 15 6 9.7859 4.9679 4.6207 16 6 9.2854 2.6825 3.7403 17 16 10.7402 1.9346 4.3953 18 6 10.5135 0.2803 3.8328 19 1 9.6388 0.0216 3.2545 20 6 11.4569 -0.6877 4.1314 21 7 12.5247 -0.3719 4.8368 22 14 11.2162 -2.4418 3.5357 23 1 11.8404 -2.6002 2.1976 24 1 11.8529 -3.3815 4.4932 25 1 9.7641 -2.7381 3.4428 26 16 8.0371 1.8677 2.8002 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.3723 3.2199 -1.4047 33 1 5.0056 2.3668 -1.3317 34 1 5.5151 4.4242 1.9896 35 1 9.4863 4.9862 5.6686 36 1 10.8335 4.6757 4.5474 37 1 9.6543 5.9596 4.1879 38 1 13.1856 -1.0503 5.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193304287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:34 Heat of formation + Delta-G solvation = -39.363556 kcal Electronic energy + Delta-G solvation = -22168.546681 eV Core-core repulsion = 18650.110089 eV Total energy + Delta-G solvation = -3518.436592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67588 -40.29570 -39.27228 -36.34942 -36.06672 -34.82179 -32.13279 -31.68448 -28.81466 -27.73325 -26.83052 -23.96460 -23.82056 -23.13823 -22.31818 -21.02585 -19.75688 -19.27145 -18.64371 -17.57794 -17.36322 -17.07488 -16.78823 -16.52169 -16.51429 -15.82814 -15.53987 -15.25819 -14.94612 -14.40256 -13.86476 -13.76628 -13.49455 -13.45432 -13.41075 -13.28470 -13.09815 -13.07456 -12.88762 -12.35071 -12.19899 -12.14500 -12.04570 -11.93749 -11.72572 -11.35788 -11.33846 -10.81798 -10.49369 -10.49195 -10.28682 -9.54159 -8.58141 -8.37970 -6.30621 -0.26452 0.19668 0.81014 1.05332 1.25885 1.33626 1.38038 1.44499 1.60278 1.96925 2.13769 2.44085 2.70699 2.81100 3.08841 3.41454 3.60782 3.76303 3.90190 4.00263 4.16950 4.29008 4.42628 4.43585 4.49844 4.67602 4.77930 4.84457 4.85835 4.95567 4.97768 5.02200 5.04506 5.26988 5.28905 5.46124 5.91421 6.01539 6.13181 6.72681 6.85105 6.86514 8.49628 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003276 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.745047 B = 8545.051939 C =10466.160768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.364 6.364 4 C 0.047 3.953 5 H 0.115 0.885 6 C -0.130 4.130 7 C -0.185 4.185 8 H 0.162 0.838 9 C 0.538 3.462 10 O -0.542 6.542 11 N -0.598 5.598 12 C 0.225 3.775 13 N -0.482 5.482 14 C 0.037 3.963 15 C -0.062 4.062 16 C -0.281 4.281 17 S 0.100 5.900 18 C -0.576 4.576 19 H 0.080 0.920 20 C 0.035 3.965 21 N -0.896 5.896 22 Si 0.986 3.014 23 H -0.263 1.263 24 H -0.264 1.264 25 H -0.267 1.267 26 S 0.159 5.841 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.437 0.563 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.274 5.530 -10.282 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.283 6.283 4 C -0.012 4.012 5 H 0.133 0.867 6 C -0.168 4.168 7 C -0.206 4.206 8 H 0.180 0.820 9 C 0.326 3.674 10 O -0.418 6.418 11 N -0.249 5.249 12 C -0.148 4.148 13 N -0.204 5.204 14 C -0.105 4.105 15 C -0.122 4.122 16 C -0.517 4.517 17 S 0.348 5.652 18 C -0.724 4.724 19 H 0.098 0.902 20 C -0.172 4.172 21 N -0.530 5.530 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.188 1.188 25 H -0.192 1.192 26 S 0.403 5.597 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.279 0.721 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.256 4.701 -9.854 22.136 hybrid contribution -0.301 -0.683 -0.217 0.777 sum -19.557 4.018 -10.070 22.361 Atomic orbital electron populations 1.21767 0.92113 1.03580 1.03061 1.22797 0.96675 0.82297 1.01062 1.87786 1.18000 1.28511 1.93998 1.22641 0.82439 0.94155 1.01970 0.86723 1.23619 1.03412 1.00777 0.88962 1.22533 0.94010 1.06434 0.97663 0.82034 1.20632 0.86571 0.82546 0.77637 1.90703 1.64841 1.26301 1.59992 1.42460 1.17305 1.15023 1.50091 1.24126 0.94302 0.94211 1.02161 1.66024 1.08158 1.32970 1.13225 1.19710 0.93890 0.92228 1.04628 1.20250 0.96749 0.96343 0.98828 1.28595 1.08761 1.02232 1.12077 1.82893 1.15405 1.05073 1.61833 1.23444 1.11972 0.95450 1.41544 0.90157 1.25890 0.93476 1.04028 0.93824 1.70091 1.10245 1.36790 1.35885 0.85131 0.79074 0.76223 0.78908 1.18751 1.18830 1.19168 1.85989 1.12627 1.09804 1.51245 0.91504 0.89234 0.92189 0.91917 0.93215 0.84278 0.87211 0.72120 0.90315 0.91327 0.89458 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.70 6.53 71.98 0.47 1.17 16 3 O -0.36 -6.61 10.60 -148.98 -1.58 -8.19 16 4 C 0.05 0.86 5.96 30.62 0.18 1.05 16 5 H 0.12 2.41 7.45 -2.39 -0.02 2.39 16 6 C -0.13 -1.83 10.19 30.62 0.31 -1.52 16 7 C -0.19 -3.22 6.13 -11.54 -0.07 -3.29 16 8 H 0.16 1.99 8.14 -2.39 -0.02 1.97 16 9 C 0.54 14.33 7.57 87.66 0.66 14.99 16 10 O -0.54 -19.16 13.78 -3.06 -0.04 -19.20 16 11 N -0.60 -16.08 5.40 -309.57 -1.67 -17.75 16 12 C 0.22 8.35 8.40 179.15 1.50 9.86 16 13 N -0.48 -18.56 10.55 -184.87 -1.95 -20.51 16 14 C 0.04 1.53 6.73 41.77 0.28 1.81 16 15 C -0.06 -2.11 10.03 71.23 0.71 -1.39 16 16 C -0.28 -13.28 6.67 67.00 0.45 -12.83 16 17 S 0.10 5.26 20.74 -56.49 -1.17 4.09 16 18 C -0.58 -32.62 9.26 67.87 0.63 -31.99 16 19 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 20 C 0.04 1.92 5.49 84.74 0.47 2.39 16 21 N -0.90 -50.78 13.22 21.59 0.29 -50.50 16 22 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 S 0.16 7.11 18.35 -56.49 -1.04 6.07 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.44 8.24 8.82 -92.71 -0.82 7.42 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.07 2.39 7.37 -2.39 -0.02 2.37 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.28 14.71 8.32 -92.71 -0.77 13.94 16 Total: -1.00 -70.39 356.10 1.48 -68.91 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.28 Total: 12.59 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 6.34 Total: -20.63 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -3.34 Total: -88.76 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.62 Total: -27.40 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 12.37 SS G_CDS: -2.21 Total: 10.17 kcal Total: -70.39 1.48 -68.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193304287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.546 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds