Wall clock time and date at job start Tue Mar 31 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47006 * 2 1 4 4 C 1.42904 * 114.00317 * 180.02562 * 3 2 1 5 5 H 1.09005 * 115.55666 * 4.30577 * 4 3 2 6 6 C 1.53068 * 117.49241 * 218.60186 * 4 3 2 7 7 C 1.52998 * 59.98615 * 252.51158 * 6 4 3 8 8 H 1.08993 * 117.50243 * 107.50125 * 7 6 4 9 9 C 1.50701 * 117.49900 * 252.50621 * 7 6 4 10 10 O 1.21288 * 120.00388 * 68.74027 * 9 7 6 11 11 N 1.34776 * 119.99662 * 248.74024 * 9 7 6 12 12 C 1.38892 * 119.99903 * 180.02562 * 11 9 7 13 13 N 1.29954 * 125.36519 * 180.02562 * 12 11 9 14 14 C 1.31587 * 117.13946 * 180.02562 * 13 12 11 15 15 C 1.50699 * 122.23144 * 179.97438 * 14 13 12 16 16 C 1.34662 * 115.53864 * 0.02562 * 14 13 12 17 17 S 1.76194 * 125.93046 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99975 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99863 * 359.97438 * 18 17 16 20 20 C 1.38435 * 119.99800 * 180.02562 * 18 17 16 21 21 N 1.31813 * 119.99800 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99985 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47198 * 90.00366 * 22 20 18 24 24 H 1.48507 * 109.47071 * 209.99966 * 22 20 18 25 25 H 1.48502 * 109.47467 * 329.99823 * 22 20 18 26 26 S 1.76143 * 125.36616 * 0.02562 * 12 11 9 27 27 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47366 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47203 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47366 * 239.99977 * 2 1 3 31 31 H 1.09002 * 109.47203 * 119.99627 * 2 1 3 32 32 H 1.09002 * 117.51401 * 145.03572 * 6 4 3 33 33 H 1.09002 * 117.51676 * 359.97438 * 6 4 3 34 34 H 0.97003 * 120.00031 * 0.02562 * 11 9 7 35 35 H 1.08994 * 109.47258 * 90.02379 * 15 14 13 36 36 H 1.09000 * 109.47251 * 210.02656 * 15 14 13 37 37 H 1.08998 * 109.46987 * 330.02391 * 15 14 13 38 38 H 0.96995 * 119.99632 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5199 -0.0748 6 6 4.0517 2.5738 0.8465 7 6 4.0419 2.6878 -0.6792 8 1 3.3574 3.4090 -1.1256 9 6 5.3530 2.5042 -1.3991 10 8 5.8826 1.4134 -1.4261 11 7 5.9372 3.5523 -2.0130 12 6 7.1453 3.3830 -2.6770 13 7 7.7980 4.3176 -3.3011 14 6 8.9308 3.9764 -3.8771 15 6 9.7794 4.9675 -4.6313 16 6 9.2808 2.6824 -3.7487 17 16 10.7339 1.9342 -4.4068 18 6 10.5065 0.2793 -3.8464 19 1 9.6325 0.0206 -3.2671 20 6 11.4488 -0.6891 -4.1477 21 7 11.2789 -1.9271 -3.7281 22 14 12.9615 -0.2412 -5.1478 23 1 14.0523 0.1815 -4.2331 24 1 13.4035 -1.4219 -5.9327 25 1 12.6315 0.8727 -6.0728 26 16 8.0343 1.8678 -2.8059 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0065 2.3661 1.3295 33 1 3.3736 3.2203 1.4037 34 1 5.5139 4.4248 -1.9911 35 1 10.4916 5.4301 -3.9481 36 1 10.3197 4.4528 -5.4258 37 1 9.1405 5.7365 -5.0656 38 1 11.9389 -2.6057 -3.9395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193304298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:37 Heat of formation + Delta-G solvation = -16.178534 kcal Electronic energy + Delta-G solvation = -22160.751111 eV Core-core repulsion = 18643.319897 eV Total energy + Delta-G solvation = -3517.431214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48252 -38.90591 -38.30092 -35.47135 -34.77816 -32.76588 -31.16333 -30.61458 -27.21491 -25.91887 -25.63625 -23.20894 -22.75966 -22.29490 -20.98656 -19.61041 -18.22316 -17.94952 -17.32796 -16.35224 -15.95696 -15.84882 -15.53728 -15.38468 -15.19609 -14.60812 -14.06962 -14.00233 -13.23389 -13.13191 -13.02401 -12.78819 -12.73475 -12.47795 -12.19817 -12.02067 -11.58455 -11.54084 -11.36148 -11.30792 -11.28732 -10.94414 -10.79022 -10.64623 -10.14873 -9.96471 -9.53328 -9.47542 -9.17945 -8.86963 -8.78831 -7.90462 -6.74002 -6.56779 -4.29919 1.27335 1.77621 2.26276 2.42166 2.64318 2.81133 3.09572 3.19159 3.25932 3.37620 3.41896 3.62722 4.02086 4.38128 4.45720 4.47603 4.67196 4.76731 4.77087 4.83215 4.92798 5.08294 5.12113 5.17948 5.39969 5.49031 5.58260 5.62888 5.78790 5.85237 6.04666 6.11822 6.33182 6.38967 6.86176 6.86700 7.10712 7.66217 7.92124 8.22662 8.41337 8.82991 10.51136 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.003003 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.669763 B = 9320.799682 C =10784.018935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.356 6.356 4 C 0.057 3.943 5 H 0.129 0.871 6 C -0.152 4.152 7 C -0.188 4.188 8 H 0.135 0.865 9 C 0.537 3.463 10 O -0.503 6.503 11 N -0.610 5.610 12 C 0.192 3.808 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.063 4.063 16 C -0.239 4.239 17 S 0.055 5.945 18 C -0.545 4.545 19 H 0.105 0.895 20 C 0.102 3.898 21 N -0.857 5.857 22 Si 0.852 3.148 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.236 1.236 26 S 0.231 5.769 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.417 0.583 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 8.346 6.513 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.275 6.275 4 C -0.002 4.002 5 H 0.147 0.853 6 C -0.190 4.190 7 C -0.210 4.210 8 H 0.153 0.847 9 C 0.323 3.677 10 O -0.378 6.378 11 N -0.259 5.259 12 C -0.178 4.178 13 N -0.202 5.202 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.475 4.475 17 S 0.302 5.698 18 C -0.693 4.693 19 H 0.122 0.878 20 C -0.110 4.110 21 N -0.491 5.491 22 Si 0.676 3.324 23 H -0.185 1.185 24 H -0.190 1.190 25 H -0.160 1.160 26 S 0.477 5.523 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.640 7.324 6.198 17.504 hybrid contribution 0.001 0.382 -0.135 0.405 sum -14.639 7.705 6.063 17.619 Atomic orbital electron populations 1.21755 0.93471 1.02519 1.03119 1.22612 0.95538 0.82987 1.00925 1.87796 1.18341 1.27442 1.93910 1.22655 0.82210 0.94377 1.00910 0.85317 1.23519 1.03353 1.01933 0.90179 1.22495 0.96151 1.05528 0.96810 0.84710 1.19802 0.85800 0.83500 0.78644 1.90722 1.63597 1.24666 1.58797 1.42326 1.19014 1.13582 1.50939 1.23986 0.93725 0.96214 1.03882 1.65865 1.08129 1.33643 1.12560 1.19116 0.93896 0.92223 1.05818 1.20148 0.97250 0.96418 0.98466 1.28170 1.07789 1.01102 1.10461 1.82460 1.17928 1.07345 1.62067 1.22662 1.13628 0.91841 1.41177 0.87775 1.24745 0.97687 0.94057 0.94493 1.70009 1.35532 1.01263 1.42266 0.86809 0.83341 0.80561 0.81696 1.18544 1.18978 1.15996 1.86155 1.10759 1.06272 1.49163 0.90809 0.91841 0.91776 0.92616 0.92742 0.87065 0.86782 0.74583 0.91681 0.91077 0.91694 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.15 0.38 -0.61 16 2 C 0.06 0.46 6.53 37.15 0.24 0.70 16 3 O -0.36 -3.68 10.60 -35.23 -0.37 -4.05 16 4 C 0.06 0.60 5.96 -26.70 -0.16 0.44 16 5 H 0.13 1.44 7.45 -51.93 -0.39 1.05 16 6 C -0.15 -1.33 10.19 -26.70 -0.27 -1.60 16 7 C -0.19 -1.93 6.13 -91.77 -0.56 -2.49 16 8 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 9 C 0.54 7.68 7.57 -10.98 -0.08 7.60 16 10 O -0.50 -9.18 13.78 5.55 0.08 -9.10 16 11 N -0.61 -8.84 5.40 -11.78 -0.06 -8.91 16 12 C 0.19 3.65 8.40 -87.19 -0.73 2.92 16 13 N -0.48 -9.42 10.55 -9.78 -0.10 -9.52 16 14 C 0.03 0.64 6.73 -83.96 -0.57 0.08 16 15 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 16 C -0.24 -5.42 6.67 29.47 0.20 -5.22 16 17 S 0.05 1.30 18.70 -107.50 -2.01 -0.71 16 18 C -0.54 -15.14 9.80 30.81 0.30 -14.84 16 19 H 0.10 3.10 6.21 -52.49 -0.33 2.78 16 20 C 0.10 2.80 5.49 -17.49 -0.10 2.71 16 21 N -0.86 -24.68 13.98 55.47 0.78 -23.91 16 22 Si 0.85 19.64 27.73 -169.99 -4.71 14.92 16 23 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.24 -5.20 6.73 56.52 0.38 -4.82 16 26 S 0.23 5.13 18.35 -107.50 -1.97 3.16 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.42 4.55 8.82 -40.82 -0.36 4.19 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.28 7.31 8.32 -40.82 -0.34 6.97 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -32.28 353.41 -8.89 -41.17 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.84 Total: 2.63 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.99 Total: -11.01 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.61 Total: -42.34 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.30 Total: -13.15 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -3.98 Total: 2.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.28 -8.89 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193304298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.987 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds