Wall clock time and date at job start Tue Mar 31 2020 15:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47006 * 2 1 4 4 C 1.42904 * 114.00317 * 180.02562 * 3 2 1 5 5 H 1.09005 * 115.55666 * 4.30577 * 4 3 2 6 6 C 1.53068 * 117.49241 * 218.60186 * 4 3 2 7 7 C 1.52998 * 59.98615 * 252.51158 * 6 4 3 8 8 H 1.08993 * 117.50243 * 107.50125 * 7 6 4 9 9 C 1.50701 * 117.49900 * 252.50621 * 7 6 4 10 10 O 1.21288 * 120.00388 * 68.74027 * 9 7 6 11 11 N 1.34776 * 119.99662 * 248.74024 * 9 7 6 12 12 C 1.38892 * 119.99903 * 180.02562 * 11 9 7 13 13 N 1.29954 * 125.36519 * 180.02562 * 12 11 9 14 14 C 1.31587 * 117.13946 * 180.02562 * 13 12 11 15 15 C 1.50699 * 122.23144 * 179.97438 * 14 13 12 16 16 C 1.34662 * 115.53864 * 0.02562 * 14 13 12 17 17 S 1.76194 * 125.93046 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99975 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99863 * 359.97438 * 18 17 16 20 20 C 1.38435 * 119.99800 * 180.02562 * 18 17 16 21 21 N 1.31813 * 119.99800 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99985 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47198 * 90.00366 * 22 20 18 24 24 H 1.48507 * 109.47071 * 209.99966 * 22 20 18 25 25 H 1.48502 * 109.47467 * 329.99823 * 22 20 18 26 26 S 1.76143 * 125.36616 * 0.02562 * 12 11 9 27 27 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47366 * 300.00022 * 1 2 3 29 29 H 1.09002 * 109.47203 * 60.00373 * 1 2 3 30 30 H 1.08999 * 109.47366 * 239.99977 * 2 1 3 31 31 H 1.09002 * 109.47203 * 119.99627 * 2 1 3 32 32 H 1.09002 * 117.51401 * 145.03572 * 6 4 3 33 33 H 1.09002 * 117.51676 * 359.97438 * 6 4 3 34 34 H 0.97003 * 120.00031 * 0.02562 * 11 9 7 35 35 H 1.08994 * 109.47258 * 90.02379 * 15 14 13 36 36 H 1.09000 * 109.47251 * 210.02656 * 15 14 13 37 37 H 1.08998 * 109.46987 * 330.02391 * 15 14 13 38 38 H 0.96995 * 119.99632 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5199 -0.0748 6 6 4.0517 2.5738 0.8465 7 6 4.0419 2.6878 -0.6792 8 1 3.3574 3.4090 -1.1256 9 6 5.3530 2.5042 -1.3991 10 8 5.8826 1.4134 -1.4261 11 7 5.9372 3.5523 -2.0130 12 6 7.1453 3.3830 -2.6770 13 7 7.7980 4.3176 -3.3011 14 6 8.9308 3.9764 -3.8771 15 6 9.7794 4.9675 -4.6313 16 6 9.2808 2.6824 -3.7487 17 16 10.7339 1.9342 -4.4068 18 6 10.5065 0.2793 -3.8464 19 1 9.6325 0.0206 -3.2671 20 6 11.4488 -0.6891 -4.1477 21 7 11.2789 -1.9271 -3.7281 22 14 12.9615 -0.2412 -5.1478 23 1 14.0523 0.1815 -4.2331 24 1 13.4035 -1.4219 -5.9327 25 1 12.6315 0.8727 -6.0728 26 16 8.0343 1.8678 -2.8059 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0065 2.3661 1.3295 33 1 3.3736 3.2203 1.4037 34 1 5.5139 4.4248 -1.9911 35 1 10.4916 5.4301 -3.9481 36 1 10.3197 4.4528 -5.4258 37 1 9.1405 5.7365 -5.0656 38 1 11.9389 -2.6057 -3.9395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193304298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:36 Heat of formation + Delta-G solvation = -37.849404 kcal Electronic energy + Delta-G solvation = -22161.690830 eV Core-core repulsion = 18643.319897 eV Total energy + Delta-G solvation = -3518.370933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71398 -40.35705 -39.29109 -36.37682 -36.10336 -34.83094 -32.18853 -31.69634 -28.83297 -27.92086 -26.87659 -24.00480 -23.82728 -23.15222 -22.38423 -21.09016 -19.76637 -19.32658 -18.66506 -17.60331 -17.39840 -17.22913 -16.82834 -16.52766 -16.51083 -15.84603 -15.57214 -15.27820 -15.00831 -14.50892 -13.87955 -13.77731 -13.56043 -13.47687 -13.45304 -13.38243 -13.18828 -13.10637 -13.09281 -12.36974 -12.20406 -12.17705 -11.94690 -11.94328 -11.74391 -11.43621 -11.29989 -10.90623 -10.62044 -10.58162 -10.29684 -9.64094 -8.62542 -8.54917 -6.35641 -0.33110 0.12392 0.73830 1.02341 1.04156 1.28543 1.37960 1.40968 1.61400 1.91789 2.13398 2.42053 2.50034 2.69079 2.76349 3.38598 3.58705 3.72637 3.88420 3.99326 4.16282 4.28269 4.35427 4.42705 4.49340 4.63961 4.76860 4.84266 4.84797 4.92650 4.96420 5.01748 5.01796 5.26616 5.42453 5.59930 5.88039 6.06775 6.11886 6.69533 6.75755 6.79409 8.50105 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.003003 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.669763 B = 9320.799682 C =10784.018935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.363 6.363 4 C 0.045 3.955 5 H 0.113 0.887 6 C -0.129 4.129 7 C -0.184 4.184 8 H 0.165 0.835 9 C 0.537 3.463 10 O -0.542 6.542 11 N -0.597 5.597 12 C 0.231 3.769 13 N -0.484 5.484 14 C 0.052 3.948 15 C -0.065 4.065 16 C -0.276 4.276 17 S 0.062 5.938 18 C -0.567 4.567 19 H 0.068 0.932 20 C 0.048 3.952 21 N -0.907 5.907 22 Si 0.914 3.086 23 H -0.252 1.252 24 H -0.254 1.254 25 H -0.219 1.219 26 S 0.165 5.835 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.438 0.562 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.661 11.342 6.573 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.282 6.282 4 C -0.014 4.014 5 H 0.130 0.870 6 C -0.167 4.167 7 C -0.205 4.205 8 H 0.182 0.818 9 C 0.325 3.675 10 O -0.418 6.418 11 N -0.248 5.248 12 C -0.141 4.141 13 N -0.206 5.206 14 C -0.089 4.089 15 C -0.124 4.124 16 C -0.511 4.511 17 S 0.307 5.693 18 C -0.715 4.715 19 H 0.086 0.914 20 C -0.158 4.158 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.176 1.176 24 H -0.178 1.178 25 H -0.143 1.143 26 S 0.411 5.589 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.280 0.720 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.809 10.363 6.279 19.919 hybrid contribution 0.007 -0.426 0.014 0.426 sum -15.802 9.938 6.292 19.699 Atomic orbital electron populations 1.21762 0.91993 1.03595 1.03106 1.22798 0.96755 0.82307 1.01014 1.87779 1.17921 1.28472 1.94004 1.22638 0.82486 0.94148 1.02120 0.86960 1.23623 1.03391 1.00711 0.88949 1.22537 0.93940 1.06391 0.97639 0.81792 1.20688 0.86623 0.82532 0.77634 1.90733 1.64783 1.26423 1.59862 1.42482 1.17327 1.15050 1.49975 1.24258 0.94104 0.94314 1.01446 1.66090 1.08232 1.32758 1.13529 1.19854 0.93580 0.91998 1.03456 1.20325 0.97462 0.96083 0.98581 1.28120 1.08123 1.01943 1.12932 1.81892 1.19350 1.04390 1.63661 1.22841 1.12788 0.94703 1.41200 0.91441 1.25728 1.00884 0.93737 0.95499 1.70116 1.37216 1.02625 1.44317 0.85894 0.79137 0.81144 0.80511 1.17621 1.17785 1.14255 1.86511 1.12670 1.09187 1.50573 0.89250 0.91440 0.92125 0.93317 0.91985 0.87301 0.84097 0.71956 0.89777 0.90795 0.89294 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.74 6.53 71.98 0.47 1.21 16 3 O -0.36 -6.91 10.60 -148.98 -1.58 -8.49 16 4 C 0.05 0.88 5.96 30.62 0.18 1.06 16 5 H 0.11 2.56 7.45 -2.38 -0.02 2.54 16 6 C -0.13 -1.92 10.19 30.62 0.31 -1.60 16 7 C -0.18 -3.32 6.13 -11.54 -0.07 -3.39 16 8 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 9 C 0.54 14.73 7.57 87.66 0.66 15.40 16 10 O -0.54 -20.11 13.78 -3.05 -0.04 -20.16 16 11 N -0.60 -16.08 5.40 -309.56 -1.67 -17.75 16 12 C 0.23 8.52 8.40 179.15 1.50 10.02 16 13 N -0.48 -17.96 10.55 -184.86 -1.95 -19.91 16 14 C 0.05 2.06 6.73 41.77 0.28 2.34 16 15 C -0.07 -1.98 10.02 71.24 0.71 -1.26 16 16 C -0.28 -12.62 6.67 67.00 0.45 -12.17 16 17 S 0.06 2.99 18.70 -56.49 -1.06 1.93 16 18 C -0.57 -32.98 9.80 67.87 0.67 -32.31 16 19 H 0.07 4.32 6.21 -2.91 -0.02 4.30 16 20 C 0.05 2.76 5.49 84.74 0.47 3.22 16 21 N -0.91 -54.62 13.98 21.59 0.30 -54.32 16 22 Si 0.91 40.83 27.73 68.60 1.90 42.73 16 23 H -0.25 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.22 -9.12 6.73 99.48 0.67 -8.45 16 26 S 0.16 7.56 18.35 -56.49 -1.04 6.53 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.44 8.10 8.82 -92.71 -0.82 7.28 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.23 7.38 -2.39 -0.02 2.21 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.28 15.48 8.32 -92.71 -0.77 14.71 16 Total: -1.00 -73.49 353.41 1.49 -72.00 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.25 Total: 15.91 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 6.37 Total: -18.46 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -3.32 Total: -91.98 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.62 Total: -28.65 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.90 Total: 42.73 kcal Atomic # 16 Polarization: 10.55 SS G_CDS: -2.09 Total: 8.46 kcal Total: -73.49 1.49 -72.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193304298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds