Wall clock time and date at job start Tue Mar 31 2020 14:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33641 * 122.74970 * 2 1 4 4 S 1.76190 * 107.92427 * 180.02562 * 3 2 1 5 5 C 1.70975 * 90.28768 * 359.97438 * 4 3 2 6 6 C 1.50694 * 124.92200 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47272 * 180.02562 * 6 5 4 8 8 C 1.47198 * 109.47062 * 300.02552 * 6 5 4 9 9 N 5.34041 * 146.93890 * 226.97749 * 2 1 3 10 10 C 1.50702 * 109.47061 * 60.02641 * 6 5 4 11 11 O 1.21305 * 120.00001 * 334.99842 * 10 6 5 12 12 C 1.46760 * 120.00121 * 155.00397 * 10 6 5 13 13 C 1.39984 * 120.23188 * 359.72167 * 12 10 6 14 14 C 1.37712 * 119.89385 * 179.72031 * 13 12 10 15 15 C 1.38652 * 120.36157 * 0.58039 * 14 13 12 16 16 C 1.38024 * 120.46872 * 359.67623 * 15 14 13 17 17 C 1.38816 * 120.09573 * 0.04044 * 16 15 14 18 18 O 1.35457 * 120.17940 * 180.02562 * 17 16 15 19 19 C 1.34800 * 117.00119 * 354.40150 * 18 17 16 20 20 H 1.08000 * 119.99783 * 5.06404 * 19 18 17 21 21 C 1.38729 * 120.00144 * 185.06327 * 19 18 17 22 22 N 1.31505 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00093 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47445 * 120.00076 * 23 21 19 26 26 H 1.48500 * 109.47077 * 240.00429 * 23 21 19 27 27 N 1.29034 * 110.16162 * 0.24514 * 5 4 3 28 28 H 1.09005 * 109.47074 * 89.99977 * 1 2 3 29 29 H 1.09000 * 109.47219 * 209.99661 * 1 2 3 30 30 H 1.09000 * 109.47280 * 330.00205 * 1 2 3 31 31 H 1.08004 * 126.03310 * 0.03780 * 3 2 1 32 32 H 1.08006 * 120.05207 * 0.02562 * 13 12 10 33 33 H 1.07998 * 119.81815 * 180.27572 * 14 13 12 34 34 H 1.07994 * 119.76462 * 179.69210 * 15 14 13 35 35 H 1.07994 * 119.95091 * 180.02562 * 16 15 14 36 36 H 0.96993 * 119.99659 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4835 -2.1270 -0.0010 7 1 3.9387 -3.0711 -0.0009 8 6 5.3290 -2.0486 -1.2034 9 7 5.9827 -1.9877 -2.1299 10 6 5.3506 -2.0473 1.2290 11 8 5.5289 -0.9800 1.7772 12 6 5.9793 -3.2609 1.7635 13 6 5.7722 -4.4960 1.1381 14 6 6.3702 -5.6294 1.6422 15 6 7.1677 -5.5567 2.7741 16 6 7.3778 -4.3476 3.4057 17 6 6.7891 -3.1921 2.9106 18 8 6.9945 -2.0045 3.5289 19 6 7.6853 -2.0284 4.6862 20 1 8.1172 -2.9535 5.0382 21 6 7.8414 -0.8646 5.4250 22 7 7.3151 0.2618 4.9966 23 14 8.7993 -0.8976 7.0283 24 1 9.2851 -2.2770 7.2864 25 1 9.9581 0.0259 6.9318 26 1 7.9155 -0.4683 8.1418 27 7 2.2199 -1.1083 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.8390 2.1308 0.0006 32 1 5.1483 -4.5591 0.2587 33 1 6.2132 -6.5810 1.1561 34 1 7.6280 -6.4524 3.1641 35 1 8.0009 -4.3005 4.2865 36 1 7.4240 1.0753 5.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193595113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:44 Heat of formation + Delta-G solvation = 48.553481 kcal Electronic energy + Delta-G solvation = -24331.159292 eV Core-core repulsion = 20681.091118 eV Total energy + Delta-G solvation = -3650.068174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22539 -39.52580 -38.23703 -36.56046 -36.47616 -33.20967 -32.51756 -31.23344 -29.75343 -29.07787 -27.57042 -25.59708 -24.17203 -22.95354 -21.58765 -20.14550 -19.76620 -18.47240 -18.21494 -17.30749 -16.87157 -15.90882 -15.81998 -14.87627 -14.75218 -14.68437 -14.33988 -14.07004 -13.94898 -13.84558 -13.46262 -13.21112 -13.15191 -12.81418 -12.69148 -12.60371 -12.39838 -12.32370 -11.89051 -11.82499 -11.44813 -11.29630 -11.13013 -11.02626 -10.86051 -10.54090 -9.83254 -9.64277 -9.45026 -9.02922 -8.87950 -8.63286 -8.41833 -7.47427 -6.62241 -4.20518 0.69401 1.29842 1.45373 1.89803 2.20948 2.50526 2.56046 2.71349 3.02946 3.03942 3.04998 3.10253 3.63314 3.80737 4.12891 4.41932 4.46625 4.79343 4.90163 4.98711 5.11903 5.15911 5.26389 5.44231 5.47247 5.52180 5.65507 5.69613 5.82391 5.98650 6.01757 6.23462 6.43409 6.56744 6.78410 6.94603 7.11743 7.17197 7.37298 7.55755 7.72943 7.76402 8.07478 8.78222 9.45992 10.51161 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004430 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.400594 B = 6318.525719 C = 7860.045405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 C -0.276 4.276 4 S 0.213 5.787 5 C 0.038 3.962 6 C 0.044 3.956 7 H 0.161 0.839 8 C 0.220 3.780 9 N -0.397 5.397 10 C 0.393 3.607 11 O -0.398 6.398 12 C -0.255 4.255 13 C -0.028 4.028 14 C -0.227 4.227 15 C -0.044 4.044 16 C -0.234 4.234 17 C 0.190 3.810 18 O -0.122 6.122 19 C -0.401 4.401 20 H 0.098 0.902 21 C 0.046 3.954 22 N -0.828 5.828 23 Si 0.943 3.057 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.273 1.273 27 N -0.460 5.460 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -3.118 -6.723 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.416 4.416 4 S 0.470 5.530 5 C -0.240 4.240 6 C 0.018 3.982 7 H 0.178 0.822 8 C -0.100 4.100 9 N -0.073 5.073 10 C 0.266 3.734 11 O -0.269 6.269 12 C -0.258 4.258 13 C -0.046 4.046 14 C -0.246 4.246 15 C -0.062 4.062 16 C -0.253 4.253 17 C 0.130 3.870 18 O -0.020 6.020 19 C -0.476 4.476 20 H 0.115 0.885 21 C -0.163 4.163 22 N -0.458 5.458 23 Si 0.767 3.233 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.175 5.175 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.194 0.806 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.996 -1.858 -7.791 10.635 hybrid contribution -0.719 -0.267 1.204 1.428 sum -7.715 -2.125 -6.587 10.365 Atomic orbital electron populations 1.20319 0.87096 1.03357 1.02668 1.20163 0.98111 0.86348 1.02697 1.27098 0.96754 1.04118 1.13589 1.84453 1.04791 1.00592 1.63117 1.25666 0.93559 0.97963 1.06787 1.17689 0.91907 0.99158 0.89443 0.82206 1.27866 0.93993 0.94477 0.93649 1.81172 1.08382 1.06975 1.10788 1.21327 0.79380 0.89718 0.82947 1.90765 1.51375 1.29858 1.54939 1.18944 1.10801 0.93906 1.02192 1.20934 0.95772 0.91251 0.96686 1.20516 1.05674 0.97803 1.00572 1.20989 0.94801 0.96602 0.93833 1.21186 1.07222 0.92400 1.04481 1.19351 0.90703 0.86308 0.90654 1.84072 1.60852 1.23987 1.33065 1.21615 1.31827 0.97494 0.96677 0.88479 1.25429 0.97222 0.94218 0.99425 1.70098 1.38792 0.99419 1.37519 0.85621 0.78890 0.79127 0.79687 1.18824 1.19871 1.19850 1.66009 1.03743 1.32173 1.15596 0.90876 0.90547 0.90811 0.80568 0.86469 0.86903 0.86916 0.84889 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.31 36.00 0.37 -0.35 16 2 C 0.06 0.83 6.74 -84.23 -0.57 0.26 16 3 C -0.28 -3.60 11.13 29.12 0.32 -3.28 16 4 S 0.21 3.39 21.51 -107.50 -2.31 1.08 16 5 C 0.04 0.62 5.81 -13.46 -0.08 0.54 16 6 C 0.04 0.69 2.30 -95.71 -0.22 0.47 16 7 H 0.16 2.00 6.73 -51.93 -0.35 1.65 16 8 C 0.22 3.54 14.46 -20.78 -0.30 3.24 16 9 N -0.40 -6.86 18.53 42.14 0.78 -6.08 16 10 C 0.39 7.80 6.17 -30.87 -0.19 7.61 16 11 O -0.40 -9.48 13.81 -16.35 -0.23 -9.71 16 12 C -0.26 -5.11 5.88 -104.92 -0.62 -5.73 16 13 C -0.03 -0.45 9.36 -39.12 -0.37 -0.82 16 14 C -0.23 -3.47 10.02 -39.62 -0.40 -3.87 16 15 C -0.04 -0.71 10.03 -39.51 -0.40 -1.11 16 16 C -0.23 -4.67 9.16 -39.45 -0.36 -5.03 16 17 C 0.19 4.37 6.67 -38.48 -0.26 4.11 16 18 O -0.12 -3.34 7.84 -20.86 -0.16 -3.51 16 19 C -0.40 -10.62 9.49 30.91 0.29 -10.33 16 20 H 0.10 2.33 5.21 -52.49 -0.27 2.06 16 21 C 0.05 1.20 5.49 -17.51 -0.10 1.11 16 22 N -0.83 -23.43 13.67 55.48 0.76 -22.67 16 23 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 27 N -0.46 -7.19 10.53 -8.06 -0.08 -7.27 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.12 1.46 6.47 -52.48 -0.34 1.13 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -32.06 340.69 -6.92 -38.99 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.93 Total: 2.80 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.86 Total: -13.17 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 1.45 Total: -36.02 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.39 Total: -13.21 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.31 Total: 1.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.06 -6.92 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193595113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.540 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds