Wall clock time and date at job start Tue Mar 31 2020 14:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33641 * 122.74970 * 2 1 4 4 S 1.76190 * 107.92427 * 180.02562 * 3 2 1 5 5 C 1.70975 * 90.28768 * 359.97438 * 4 3 2 6 6 C 1.50694 * 124.92200 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47272 * 180.02562 * 6 5 4 8 8 C 1.47198 * 109.47062 * 300.02552 * 6 5 4 9 9 N 5.34041 * 146.93890 * 226.97749 * 2 1 3 10 10 C 1.50702 * 109.47061 * 60.02641 * 6 5 4 11 11 O 1.21305 * 120.00001 * 334.99842 * 10 6 5 12 12 C 1.46760 * 120.00121 * 155.00397 * 10 6 5 13 13 C 1.39984 * 120.23188 * 359.72167 * 12 10 6 14 14 C 1.37712 * 119.89385 * 179.72031 * 13 12 10 15 15 C 1.38652 * 120.36157 * 0.58039 * 14 13 12 16 16 C 1.38024 * 120.46872 * 359.67623 * 15 14 13 17 17 C 1.38816 * 120.09573 * 0.04044 * 16 15 14 18 18 O 1.35457 * 120.17940 * 180.02562 * 17 16 15 19 19 C 1.34800 * 117.00119 * 354.40150 * 18 17 16 20 20 H 1.08000 * 119.99783 * 5.06404 * 19 18 17 21 21 C 1.38729 * 120.00144 * 185.06327 * 19 18 17 22 22 N 1.31505 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00093 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47049 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47445 * 120.00076 * 23 21 19 26 26 H 1.48500 * 109.47077 * 240.00429 * 23 21 19 27 27 N 1.29034 * 110.16162 * 0.24514 * 5 4 3 28 28 H 1.09005 * 109.47074 * 89.99977 * 1 2 3 29 29 H 1.09000 * 109.47219 * 209.99661 * 1 2 3 30 30 H 1.09000 * 109.47280 * 330.00205 * 1 2 3 31 31 H 1.08004 * 126.03310 * 0.03780 * 3 2 1 32 32 H 1.08006 * 120.05207 * 0.02562 * 13 12 10 33 33 H 1.07998 * 119.81815 * 180.27572 * 14 13 12 34 34 H 1.07994 * 119.76462 * 179.69210 * 15 14 13 35 35 H 1.07994 * 119.95091 * 180.02562 * 16 15 14 36 36 H 0.96993 * 119.99659 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4835 -2.1270 -0.0010 7 1 3.9387 -3.0711 -0.0009 8 6 5.3290 -2.0486 -1.2034 9 7 5.9827 -1.9877 -2.1299 10 6 5.3506 -2.0473 1.2290 11 8 5.5289 -0.9800 1.7772 12 6 5.9793 -3.2609 1.7635 13 6 5.7722 -4.4960 1.1381 14 6 6.3702 -5.6294 1.6422 15 6 7.1677 -5.5567 2.7741 16 6 7.3778 -4.3476 3.4057 17 6 6.7891 -3.1921 2.9106 18 8 6.9945 -2.0045 3.5289 19 6 7.6853 -2.0284 4.6862 20 1 8.1172 -2.9535 5.0382 21 6 7.8414 -0.8646 5.4250 22 7 7.3151 0.2618 4.9966 23 14 8.7993 -0.8976 7.0283 24 1 9.2851 -2.2770 7.2864 25 1 9.9581 0.0259 6.9318 26 1 7.9155 -0.4683 8.1418 27 7 2.2199 -1.1083 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.8390 2.1308 0.0006 32 1 5.1483 -4.5591 0.2587 33 1 6.2132 -6.5810 1.1561 34 1 7.6280 -6.4524 3.1641 35 1 8.0009 -4.3005 4.2865 36 1 7.4240 1.0753 5.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193595113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:44 Heat of formation + Delta-G solvation = 29.112064 kcal Electronic energy + Delta-G solvation = -24332.002335 eV Core-core repulsion = 20681.091118 eV Total energy + Delta-G solvation = -3650.911217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63894 -40.86216 -39.81538 -38.10085 -37.90101 -34.50141 -34.32823 -32.58094 -30.98085 -30.60516 -28.54415 -27.43285 -25.52725 -24.27886 -23.12385 -21.63271 -20.92135 -19.91171 -19.74257 -18.82287 -18.27916 -17.36380 -17.13899 -16.36395 -16.22691 -16.01812 -15.86572 -15.61707 -15.35030 -15.04799 -14.97248 -14.65071 -14.38130 -14.32320 -14.04900 -13.92881 -13.57147 -13.30073 -13.27298 -13.15300 -13.02256 -12.71924 -12.56285 -12.28869 -12.20557 -12.09836 -11.50174 -10.89663 -10.85517 -10.80067 -10.26815 -9.87713 -9.77277 -9.07852 -8.48328 -6.17591 -0.48230 -0.18797 0.28286 0.72341 0.76591 1.14439 1.24090 1.34384 1.43566 1.45909 1.52779 1.73724 2.14027 2.34070 2.77448 2.91109 3.05028 3.18512 3.38269 3.70231 3.89597 4.06558 4.19602 4.24658 4.30546 4.32264 4.52444 4.65550 4.82468 4.85891 4.92994 4.95585 5.07754 5.14109 5.36941 5.47037 5.59788 5.69364 5.93853 6.05854 6.14866 6.53559 6.57157 6.92372 7.72018 8.71326 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004430 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.400594 B = 6318.525719 C = 7860.045405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.045 3.955 3 C -0.255 4.255 4 S 0.152 5.848 5 C 0.022 3.978 6 C 0.058 3.942 7 H 0.199 0.801 8 C 0.234 3.766 9 N -0.416 5.416 10 C 0.393 3.607 11 O -0.444 6.444 12 C -0.270 4.270 13 C -0.024 4.024 14 C -0.202 4.202 15 C -0.030 4.030 16 C -0.258 4.258 17 C 0.158 3.842 18 O -0.183 6.183 19 C -0.425 4.425 20 H 0.109 0.891 21 C -0.016 4.016 22 N -0.898 5.898 23 Si 1.017 2.983 24 H -0.246 1.246 25 H -0.270 1.270 26 H -0.269 1.269 27 N -0.461 5.461 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.211 0.789 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 -6.474 -8.036 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.394 4.394 4 S 0.408 5.592 5 C -0.256 4.256 6 C 0.033 3.967 7 H 0.216 0.784 8 C -0.085 4.085 9 N -0.091 5.091 10 C 0.269 3.731 11 O -0.318 6.318 12 C -0.272 4.272 13 C -0.042 4.042 14 C -0.220 4.220 15 C -0.048 4.048 16 C -0.277 4.277 17 C 0.102 3.898 18 O -0.085 6.085 19 C -0.500 4.500 20 H 0.126 0.874 21 C -0.216 4.216 22 N -0.533 5.533 23 Si 0.836 3.164 24 H -0.169 1.169 25 H -0.196 1.196 26 H -0.194 1.194 27 N -0.177 5.177 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.227 0.773 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.143 0.857 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.669 -5.298 -9.146 13.670 hybrid contribution -0.398 0.454 1.303 1.436 sum -9.067 -4.844 -7.843 12.931 Atomic orbital electron populations 1.20465 0.83992 1.04447 1.04201 1.20873 0.99984 0.85797 1.02140 1.27452 0.94252 1.05742 1.11986 1.84703 1.08206 1.02066 1.64226 1.25690 0.93981 0.97605 1.08300 1.17573 0.91161 1.00993 0.86989 0.78405 1.27814 0.93512 0.93797 0.93383 1.81186 1.08701 1.07728 1.11529 1.21872 0.78713 0.88961 0.83584 1.90774 1.52734 1.31536 1.56725 1.19464 1.10271 0.95865 1.01637 1.21481 0.95648 0.89635 0.97400 1.21199 1.02423 0.99413 0.98967 1.21514 0.93618 0.96345 0.93333 1.21328 1.08001 0.93147 1.05242 1.20136 0.91532 0.86612 0.91511 1.84079 1.63889 1.26141 1.34384 1.22065 1.32416 0.98208 0.97361 0.87400 1.26657 0.98254 0.93570 1.03116 1.70263 1.42802 1.00334 1.39875 0.84552 0.77213 0.79842 0.74744 1.16925 1.19553 1.19417 1.66048 1.03335 1.33178 1.15159 0.89014 0.90554 0.88671 0.77251 0.82056 0.81865 0.82781 0.85690 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.31 71.23 0.73 -0.43 16 2 C 0.04 1.14 6.74 41.52 0.28 1.42 16 3 C -0.26 -6.36 11.13 66.78 0.74 -5.62 16 4 S 0.15 4.98 21.51 -56.49 -1.22 3.76 16 5 C 0.02 0.70 5.81 88.52 0.51 1.21 16 6 C 0.06 1.76 2.30 -14.09 -0.03 1.73 16 7 H 0.20 4.28 6.73 -2.39 -0.02 4.27 16 8 C 0.23 7.30 14.46 89.45 1.29 8.59 16 9 N -0.42 -13.96 18.53 20.00 0.37 -13.59 16 10 C 0.39 15.91 6.17 27.92 0.17 16.09 16 11 O -0.44 -22.59 13.81 17.82 0.25 -22.35 16 12 C -0.27 -10.68 5.88 -20.06 -0.12 -10.79 16 13 C -0.02 -0.67 9.36 22.57 0.21 -0.45 16 14 C -0.20 -5.01 10.02 22.24 0.22 -4.78 16 15 C -0.03 -0.86 10.03 22.32 0.22 -0.64 16 16 C -0.26 -10.24 9.16 22.36 0.20 -10.03 16 17 C 0.16 7.50 6.67 22.98 0.15 7.65 16 18 O -0.18 -10.77 7.84 1.69 0.01 -10.76 16 19 C -0.42 -24.13 9.49 67.94 0.64 -23.48 16 20 H 0.11 5.51 5.21 -2.91 -0.02 5.49 16 21 C -0.02 -0.87 5.49 84.86 0.47 -0.40 16 22 N -0.90 -55.23 13.67 21.63 0.30 -54.94 16 23 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 24 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 27 N -0.46 -13.77 10.53 -179.41 -1.89 -15.65 16 28 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.15 8.12 -2.39 -0.02 1.13 16 31 H 0.21 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.16 3.07 6.47 -2.91 -0.02 3.06 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.13 5.05 5.64 -2.91 -0.02 5.03 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.48 340.69 6.72 -72.76 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.16 Total: 16.64 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 5.71 Total: -19.95 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.22 Total: -84.18 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: 0.26 Total: -33.10 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.22 Total: 3.76 kcal Total: -79.48 6.72 -72.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193595113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.877 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds