Wall clock time and date at job start Tue Mar 31 2020 14:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74700 * 2 1 4 4 S 1.76200 * 107.92469 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28006 * 0.02562 * 4 3 2 6 6 C 1.50701 * 124.91441 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47342 * 180.02562 * 6 5 4 8 8 C 1.47202 * 109.47369 * 60.02054 * 6 5 4 9 9 N 5.34044 * 146.92846 * 133.04225 * 2 1 3 10 10 C 1.50702 * 109.47159 * 300.02227 * 6 5 4 11 11 O 1.21309 * 119.99858 * 29.99962 * 10 6 5 12 12 C 1.46762 * 120.00486 * 210.00208 * 10 6 5 13 13 C 1.39997 * 120.22521 * 359.72504 * 12 10 6 14 14 C 1.37712 * 119.88894 * 179.67969 * 13 12 10 15 15 C 1.38654 * 120.36266 * 0.61654 * 14 13 12 16 16 C 1.38020 * 120.46980 * 359.68183 * 15 14 13 17 17 C 1.38820 * 120.09654 * 359.97438 * 16 15 14 18 18 O 1.35463 * 120.18513 * 180.02562 * 17 16 15 19 19 C 1.34793 * 116.99591 * 354.40154 * 18 17 16 20 20 H 1.08008 * 120.00212 * 5.06036 * 19 18 17 21 21 C 1.38727 * 120.00317 * 185.06230 * 19 18 17 22 22 N 1.31495 * 119.99605 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00316 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47154 * 59.99875 * 23 21 19 25 25 H 1.48502 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47149 * 299.99999 * 23 21 19 27 27 N 1.29027 * 110.16741 * 359.73258 * 5 4 3 28 28 H 1.09000 * 109.47364 * 90.00413 * 1 2 3 29 29 H 1.09003 * 109.47079 * 210.00013 * 1 2 3 30 30 H 1.09001 * 109.47258 * 329.99743 * 1 2 3 31 31 H 1.07995 * 126.03988 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.05584 * 359.97438 * 13 12 10 33 33 H 1.07993 * 119.81786 * 180.34332 * 14 13 12 34 34 H 1.08000 * 119.76763 * 179.69970 * 15 14 13 35 35 H 1.07996 * 119.95120 * 180.02562 * 16 15 14 36 36 H 0.97000 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6733 -0.0007 5 6 3.5039 -0.9818 -0.0018 6 6 4.4835 -2.1270 -0.0022 7 1 3.9388 -3.0711 -0.0033 8 6 5.3293 -2.0498 1.2001 9 7 5.9822 -1.9891 2.1298 10 6 5.3505 -2.0459 -1.2322 11 8 5.6027 -0.9672 -1.7265 12 6 5.8896 -3.2720 -1.8322 13 6 5.6062 -4.5190 -1.2625 14 6 6.1102 -5.6656 -1.8351 15 6 6.9082 -5.5916 -2.9665 16 6 7.2022 -4.3696 -3.5369 17 6 6.6985 -3.2021 -2.9798 18 8 6.9854 -2.0019 -3.5385 19 6 7.8592 -1.9979 -4.5648 20 1 8.2332 -2.9312 -4.9593 21 6 8.2783 -0.7951 -5.1144 22 7 7.8227 0.3412 -4.6345 23 14 9.4899 -0.7896 -6.5362 24 1 8.9066 -1.5257 -7.6865 25 1 9.7755 0.6113 -6.9378 26 1 10.7512 -1.4499 -6.1143 27 7 2.2199 -1.1083 0.0042 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.8391 2.1308 0.0004 32 1 4.9894 -4.5821 -0.3782 33 1 5.8863 -6.6273 -1.3978 34 1 7.3024 -6.4965 -3.4048 35 1 7.8243 -4.3217 -4.4184 36 1 8.1159 1.1823 -5.0185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193595130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:47 Heat of formation + Delta-G solvation = 48.575015 kcal Electronic energy + Delta-G solvation = -24321.202045 eV Core-core repulsion = 20671.134805 eV Total energy + Delta-G solvation = -3650.067240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22666 -39.53016 -38.23819 -36.53759 -36.44277 -33.21570 -32.51914 -31.22998 -29.75528 -29.07750 -27.57788 -25.59432 -24.16738 -22.97117 -21.59738 -20.14020 -19.76762 -18.46921 -18.21646 -17.30279 -16.88127 -15.90810 -15.82342 -14.85488 -14.75948 -14.68597 -14.33468 -14.11545 -13.94816 -13.83730 -13.42198 -13.23491 -13.14748 -12.80066 -12.70762 -12.56659 -12.43398 -12.29781 -11.88269 -11.81684 -11.43470 -11.30580 -11.13009 -10.99410 -10.87482 -10.57598 -9.83636 -9.64963 -9.45594 -9.01906 -8.88555 -8.64330 -8.41599 -7.47389 -6.61893 -4.20344 0.68172 1.29739 1.44853 1.89539 2.21286 2.49523 2.56195 2.70261 3.03505 3.04240 3.06285 3.08224 3.62422 3.81040 4.13511 4.42341 4.46706 4.78722 4.88996 5.00840 5.09873 5.14553 5.25327 5.44862 5.47392 5.53122 5.64102 5.69645 5.81191 5.98621 6.01713 6.22548 6.43516 6.56865 6.78205 6.94368 7.11814 7.16893 7.38363 7.55860 7.71953 7.76362 8.07412 8.78213 9.45861 10.51313 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.004342 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.295951 B = 6447.171247 C = 7843.043590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 C -0.277 4.277 4 S 0.215 5.785 5 C 0.037 3.963 6 C 0.044 3.956 7 H 0.160 0.840 8 C 0.219 3.781 9 N -0.397 5.397 10 C 0.393 3.607 11 O -0.398 6.398 12 C -0.255 4.255 13 C -0.028 4.028 14 C -0.227 4.227 15 C -0.044 4.044 16 C -0.234 4.234 17 C 0.190 3.810 18 O -0.121 6.121 19 C -0.402 4.402 20 H 0.097 0.903 21 C 0.047 3.953 22 N -0.828 5.828 23 Si 0.943 3.057 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.267 1.267 27 N -0.459 5.459 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.177 0.823 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -3.222 6.063 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.417 4.417 4 S 0.472 5.528 5 C -0.241 4.241 6 C 0.018 3.982 7 H 0.177 0.823 8 C -0.100 4.100 9 N -0.073 5.073 10 C 0.266 3.734 11 O -0.270 6.270 12 C -0.258 4.258 13 C -0.046 4.046 14 C -0.246 4.246 15 C -0.062 4.062 16 C -0.253 4.253 17 C 0.129 3.871 18 O -0.019 6.019 19 C -0.477 4.477 20 H 0.114 0.886 21 C -0.162 4.162 22 N -0.458 5.458 23 Si 0.766 3.234 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.192 1.192 27 N -0.175 5.175 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.194 0.806 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.775 -1.941 7.193 10.769 hybrid contribution -0.611 -0.262 -1.151 1.329 sum -8.386 -2.203 6.043 10.569 Atomic orbital electron populations 1.20322 0.87093 1.03084 1.02948 1.20166 0.98114 0.86352 1.02710 1.27120 0.96873 1.04119 1.13547 1.84531 1.04582 1.00535 1.63117 1.25679 0.93557 0.97975 1.06872 1.17686 0.91906 0.99143 0.89420 0.82264 1.27954 0.93993 0.94447 0.93645 1.81264 1.08352 1.07002 1.10705 1.21330 0.79182 0.90003 0.82851 1.90762 1.48724 1.29751 1.57762 1.18940 1.12549 0.93334 1.01001 1.20946 0.95694 0.91188 0.96810 1.20516 1.06253 0.97453 1.00360 1.20989 0.94409 0.96630 0.94199 1.21182 1.07829 0.91922 1.04359 1.19352 0.91332 0.86523 0.89858 1.84072 1.51993 1.23919 1.41909 1.21520 1.21849 0.94879 1.09455 0.88582 1.25421 0.97869 0.94049 0.98902 1.70074 1.39333 0.97716 1.38707 0.85759 0.79689 0.78234 0.79704 1.19194 1.20012 1.19217 1.66008 1.03735 1.32170 1.15580 0.90658 0.90647 0.90914 0.80571 0.86394 0.86894 0.86917 0.84905 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.31 36.00 0.37 -0.34 16 2 C 0.06 0.81 6.74 -84.23 -0.57 0.25 16 3 C -0.28 -3.58 11.13 29.12 0.32 -3.26 16 4 S 0.22 3.42 21.49 -107.50 -2.31 1.11 16 5 C 0.04 0.60 5.85 -13.46 -0.08 0.52 16 6 C 0.04 0.70 2.43 -95.71 -0.23 0.46 16 7 H 0.16 1.99 6.48 -51.93 -0.34 1.65 16 8 C 0.22 3.58 14.47 -20.70 -0.30 3.28 16 9 N -0.40 -6.96 18.55 42.22 0.78 -6.18 16 10 C 0.39 7.81 6.11 -30.86 -0.19 7.62 16 11 O -0.40 -9.50 13.88 -16.35 -0.23 -9.73 16 12 C -0.26 -5.10 5.88 -104.91 -0.62 -5.72 16 13 C -0.03 -0.45 9.36 -39.11 -0.37 -0.81 16 14 C -0.23 -3.45 10.02 -39.62 -0.40 -3.85 16 15 C -0.04 -0.71 10.03 -39.51 -0.40 -1.11 16 16 C -0.23 -4.66 9.16 -39.45 -0.36 -5.02 16 17 C 0.19 4.36 6.67 -38.49 -0.26 4.10 16 18 O -0.12 -3.32 7.84 -20.86 -0.16 -3.49 16 19 C -0.40 -10.65 9.49 30.91 0.29 -10.36 16 20 H 0.10 2.30 5.21 -52.48 -0.27 2.02 16 21 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 22 N -0.83 -23.44 13.67 55.48 0.76 -22.68 16 23 Si 0.94 19.43 29.55 -169.99 -5.02 14.40 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 N -0.46 -7.12 10.53 -8.06 -0.08 -7.20 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.12 1.46 6.36 -52.49 -0.33 1.12 16 33 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 36 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.06 340.54 -6.91 -38.98 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.91 Total: 2.79 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.87 Total: -13.13 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 1.46 Total: -36.06 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.39 Total: -13.21 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.31 Total: 1.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.06 -6.91 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193595130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.552 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds