Wall clock time and date at job start Tue Mar 31 2020 14:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74700 * 2 1 4 4 S 1.76200 * 107.92469 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28006 * 0.02562 * 4 3 2 6 6 C 1.50701 * 124.91441 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47342 * 180.02562 * 6 5 4 8 8 C 1.47202 * 109.47369 * 60.02054 * 6 5 4 9 9 N 5.34044 * 146.92846 * 133.04225 * 2 1 3 10 10 C 1.50702 * 109.47159 * 300.02227 * 6 5 4 11 11 O 1.21309 * 119.99858 * 29.99962 * 10 6 5 12 12 C 1.46762 * 120.00486 * 210.00208 * 10 6 5 13 13 C 1.39997 * 120.22521 * 359.72504 * 12 10 6 14 14 C 1.37712 * 119.88894 * 179.67969 * 13 12 10 15 15 C 1.38654 * 120.36266 * 0.61654 * 14 13 12 16 16 C 1.38020 * 120.46980 * 359.68183 * 15 14 13 17 17 C 1.38820 * 120.09654 * 359.97438 * 16 15 14 18 18 O 1.35463 * 120.18513 * 180.02562 * 17 16 15 19 19 C 1.34793 * 116.99591 * 354.40154 * 18 17 16 20 20 H 1.08008 * 120.00212 * 5.06036 * 19 18 17 21 21 C 1.38727 * 120.00317 * 185.06230 * 19 18 17 22 22 N 1.31495 * 119.99605 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00316 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47154 * 59.99875 * 23 21 19 25 25 H 1.48502 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47149 * 299.99999 * 23 21 19 27 27 N 1.29027 * 110.16741 * 359.73258 * 5 4 3 28 28 H 1.09000 * 109.47364 * 90.00413 * 1 2 3 29 29 H 1.09003 * 109.47079 * 210.00013 * 1 2 3 30 30 H 1.09001 * 109.47258 * 329.99743 * 1 2 3 31 31 H 1.07995 * 126.03988 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.05584 * 359.97438 * 13 12 10 33 33 H 1.07993 * 119.81786 * 180.34332 * 14 13 12 34 34 H 1.08000 * 119.76763 * 179.69970 * 15 14 13 35 35 H 1.07996 * 119.95120 * 180.02562 * 16 15 14 36 36 H 0.97000 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6733 -0.0007 5 6 3.5039 -0.9818 -0.0018 6 6 4.4835 -2.1270 -0.0022 7 1 3.9388 -3.0711 -0.0033 8 6 5.3293 -2.0498 1.2001 9 7 5.9822 -1.9891 2.1298 10 6 5.3505 -2.0459 -1.2322 11 8 5.6027 -0.9672 -1.7265 12 6 5.8896 -3.2720 -1.8322 13 6 5.6062 -4.5190 -1.2625 14 6 6.1102 -5.6656 -1.8351 15 6 6.9082 -5.5916 -2.9665 16 6 7.2022 -4.3696 -3.5369 17 6 6.6985 -3.2021 -2.9798 18 8 6.9854 -2.0019 -3.5385 19 6 7.8592 -1.9979 -4.5648 20 1 8.2332 -2.9312 -4.9593 21 6 8.2783 -0.7951 -5.1144 22 7 7.8227 0.3412 -4.6345 23 14 9.4899 -0.7896 -6.5362 24 1 8.9066 -1.5257 -7.6865 25 1 9.7755 0.6113 -6.9378 26 1 10.7512 -1.4499 -6.1143 27 7 2.2199 -1.1083 0.0042 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.8391 2.1308 0.0004 32 1 4.9894 -4.5821 -0.3782 33 1 5.8863 -6.6273 -1.3978 34 1 7.3024 -6.4965 -3.4048 35 1 7.8243 -4.3217 -4.4184 36 1 8.1159 1.1823 -5.0185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193595130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:46 Heat of formation + Delta-G solvation = 29.073816 kcal Electronic energy + Delta-G solvation = -24322.047681 eV Core-core repulsion = 20671.134805 eV Total energy + Delta-G solvation = -3650.912876 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63629 -40.86321 -39.81795 -38.09206 -37.86323 -34.50746 -34.33032 -32.57211 -30.98056 -30.60119 -28.54377 -27.42836 -25.51894 -24.29289 -23.13213 -21.62705 -20.91948 -19.91720 -19.72649 -18.83055 -18.27737 -17.36933 -17.13553 -16.37010 -16.20366 -15.99868 -15.88911 -15.65396 -15.33269 -15.03422 -14.96105 -14.65642 -14.37035 -14.34146 -14.02286 -13.93029 -13.57044 -13.30936 -13.26074 -13.15051 -12.99155 -12.71952 -12.51858 -12.31743 -12.19888 -12.14384 -11.50581 -10.89296 -10.83663 -10.80030 -10.27621 -9.87324 -9.77875 -9.07493 -8.48017 -6.17456 -0.49282 -0.18353 0.27819 0.73048 0.76901 1.12945 1.22747 1.34020 1.44883 1.45871 1.50433 1.74083 2.14370 2.33059 2.77707 2.91683 3.04635 3.18782 3.39158 3.70255 3.87341 4.06612 4.20773 4.24924 4.30634 4.32558 4.53325 4.65933 4.83322 4.85219 4.93430 4.96015 5.07453 5.14600 5.37152 5.47502 5.60111 5.69876 5.93565 6.05544 6.15491 6.53504 6.56571 6.92385 7.72054 8.71171 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.004342 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.295951 B = 6447.171247 C = 7843.043590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.045 3.955 3 C -0.255 4.255 4 S 0.151 5.849 5 C 0.021 3.979 6 C 0.059 3.941 7 H 0.199 0.801 8 C 0.233 3.767 9 N -0.418 5.418 10 C 0.393 3.607 11 O -0.444 6.444 12 C -0.270 4.270 13 C -0.024 4.024 14 C -0.202 4.202 15 C -0.030 4.030 16 C -0.259 4.259 17 C 0.157 3.843 18 O -0.183 6.183 19 C -0.427 4.427 20 H 0.109 0.891 21 C -0.015 4.015 22 N -0.898 5.898 23 Si 1.017 2.983 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.256 1.256 27 N -0.459 5.459 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.211 0.789 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -6.630 7.224 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.394 4.394 4 S 0.407 5.593 5 C -0.256 4.256 6 C 0.033 3.967 7 H 0.216 0.784 8 C -0.086 4.086 9 N -0.094 5.094 10 C 0.269 3.731 11 O -0.318 6.318 12 C -0.273 4.273 13 C -0.041 4.041 14 C -0.220 4.220 15 C -0.048 4.048 16 C -0.278 4.278 17 C 0.102 3.898 18 O -0.085 6.085 19 C -0.502 4.502 20 H 0.126 0.874 21 C -0.215 4.215 22 N -0.533 5.533 23 Si 0.836 3.164 24 H -0.178 1.178 25 H -0.199 1.199 26 H -0.181 1.181 27 N -0.175 5.175 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.228 0.772 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.143 0.857 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.718 -5.435 8.387 13.940 hybrid contribution -0.265 0.459 -1.237 1.346 sum -9.983 -4.976 7.150 13.249 Atomic orbital electron populations 1.20468 0.83955 1.04746 1.03934 1.20878 0.99989 0.85779 1.02136 1.27472 0.94284 1.05760 1.11877 1.84803 1.08110 1.02105 1.64293 1.25679 0.93978 0.97536 1.08444 1.17580 0.91152 1.01036 0.86888 0.78398 1.27952 0.93504 0.93713 0.93410 1.81276 1.08722 1.07821 1.11531 1.21881 0.78445 0.89288 0.83525 1.90771 1.50141 1.31448 1.59473 1.19467 1.11954 0.95359 1.00472 1.21504 0.95391 0.89551 0.97697 1.21204 1.02972 0.99212 0.98594 1.21520 0.93003 0.96427 0.93863 1.21330 1.08809 0.92649 1.04973 1.20145 0.91978 0.86733 0.90989 1.84078 1.54537 1.26043 1.43792 1.21987 1.22553 0.95638 1.10055 0.87424 1.26654 0.99743 0.93383 1.01770 1.70248 1.42834 0.98387 1.41787 0.84684 0.77245 0.78315 0.76206 1.17767 1.19870 1.18059 1.66047 1.03271 1.33160 1.15063 0.89878 0.90082 0.88244 0.77237 0.81883 0.81813 0.82774 0.85675 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.31 71.24 0.73 -0.40 16 2 C 0.05 1.12 6.74 41.52 0.28 1.40 16 3 C -0.25 -6.27 11.13 66.78 0.74 -5.53 16 4 S 0.15 4.94 21.49 -56.49 -1.21 3.73 16 5 C 0.02 0.67 5.85 88.52 0.52 1.19 16 6 C 0.06 1.78 2.43 -14.09 -0.03 1.75 16 7 H 0.20 4.25 6.48 -2.39 -0.02 4.24 16 8 C 0.23 7.41 14.47 89.42 1.29 8.70 16 9 N -0.42 -14.34 18.55 20.03 0.37 -13.97 16 10 C 0.39 15.93 6.11 27.92 0.17 16.10 16 11 O -0.44 -22.66 13.88 17.81 0.25 -22.42 16 12 C -0.27 -10.67 5.88 -20.05 -0.12 -10.79 16 13 C -0.02 -0.66 9.36 22.57 0.21 -0.44 16 14 C -0.20 -4.96 10.02 22.24 0.22 -4.73 16 15 C -0.03 -0.86 10.03 22.32 0.22 -0.64 16 16 C -0.26 -10.24 9.16 22.36 0.20 -10.03 16 17 C 0.16 7.47 6.67 22.98 0.15 7.62 16 18 O -0.18 -10.76 7.84 1.70 0.01 -10.74 16 19 C -0.43 -24.27 9.49 67.94 0.64 -23.63 16 20 H 0.11 5.48 5.21 -2.91 -0.02 5.46 16 21 C -0.01 -0.84 5.49 84.86 0.47 -0.37 16 22 N -0.90 -55.34 13.67 21.62 0.30 -55.05 16 23 Si 1.02 42.06 29.55 68.60 2.03 44.08 16 24 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 27 N -0.46 -13.52 10.53 -179.40 -1.89 -15.41 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 31 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.16 3.04 6.36 -2.91 -0.02 3.02 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.13 5.03 5.64 -2.91 -0.02 5.02 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.80 340.54 6.72 -73.07 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.16 Total: 16.50 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.71 Total: -19.80 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.22 Total: -84.42 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: 0.26 Total: -33.16 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.21 Total: 3.73 kcal Total: -79.80 6.72 -73.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193595130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.148 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds