Wall clock time and date at job start Tue Mar 31 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48502 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46754 * 299.99450 * 3 2 1 6 6 H 1.48498 * 109.47311 * 59.99343 * 3 2 1 7 7 C 1.38796 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00431 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47440 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99946 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00280 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00336 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47341 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47132 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47226 * 179.97438 * 16 15 14 18 18 C 1.34774 * 119.99745 * 179.97438 * 17 16 15 19 19 O 1.21702 * 120.00519 * 359.97438 * 18 17 16 20 20 C 1.46584 * 119.99515 * 180.02562 * 18 17 16 21 21 C 1.36652 * 125.45799 * 180.02562 * 20 18 17 22 22 C 1.37475 * 113.29531 * 179.97438 * 21 20 18 23 23 C 1.33814 * 115.10326 * 0.02562 * 22 21 20 24 24 S 1.70613 * 110.95401 * 359.97438 * 23 22 21 25 25 H 0.96999 * 120.00185 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47147 * 59.99800 * 10 9 7 27 27 H 1.09000 * 109.46968 * 299.99975 * 10 9 7 28 28 H 0.97003 * 119.99418 * 0.02562 * 13 11 10 29 29 H 1.08999 * 109.47262 * 59.99429 * 14 13 11 30 30 H 1.09008 * 109.46823 * 299.99633 * 14 13 11 31 31 H 1.08994 * 109.47094 * 59.99518 * 15 14 13 32 32 H 1.09000 * 109.46860 * 299.99789 * 15 14 13 33 33 H 1.09007 * 109.47095 * 59.99658 * 16 15 14 34 34 H 1.09000 * 109.47192 * 299.99728 * 16 15 14 35 35 H 0.97002 * 119.99564 * 0.02562 * 17 16 15 36 36 H 1.07998 * 123.35183 * 0.27017 * 21 20 18 37 37 H 1.07999 * 122.44590 * 180.02562 * 22 21 20 38 38 H 1.07999 * 124.52176 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0018 14 6 2.3305 -7.7151 0.0019 15 6 3.5026 -8.6985 0.0033 16 6 2.9660 -10.1314 0.0040 17 7 4.0883 -11.0731 0.0047 18 6 3.8542 -12.4003 0.0059 19 8 2.7106 -12.8166 0.0069 20 6 4.9771 -13.3425 0.0072 21 6 4.8689 -14.7048 0.0080 22 6 6.0846 -15.3467 0.0086 23 6 7.1524 -14.5402 0.0089 24 16 6.6791 -12.9011 0.0077 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7313 0.8906 27 1 3.1244 -3.7314 -0.8895 28 1 3.8010 -6.1834 0.0022 29 1 1.7222 -7.8753 -0.8883 30 1 1.7215 -7.8749 0.8917 31 1 4.1104 -8.5381 0.8937 32 1 4.1119 -8.5388 -0.8863 33 1 2.3579 -10.2920 -0.8863 34 1 2.3569 -10.2908 0.8937 35 1 4.9998 -10.7413 0.0051 36 1 3.9226 -15.2252 0.0035 37 1 6.1714 -16.4232 0.0089 38 1 8.1771 -14.8815 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195300705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:25 Heat of formation + Delta-G solvation = -77.617955 kcal Electronic energy + Delta-G solvation = -20912.135018 eV Core-core repulsion = 17392.039591 eV Total energy + Delta-G solvation = -3520.095427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92552 -40.56118 -38.50799 -37.21022 -35.58386 -34.57474 -32.89504 -31.11947 -30.19386 -27.70619 -26.88032 -25.28240 -22.92903 -22.42878 -21.73329 -20.31977 -19.85768 -19.48779 -17.75054 -17.58336 -17.17117 -16.91367 -16.86732 -16.74509 -16.46800 -16.03142 -15.62054 -15.56299 -14.74866 -14.62880 -14.35977 -14.26251 -13.78105 -13.71160 -13.35505 -13.35248 -13.15020 -13.10277 -12.90562 -12.64249 -12.56789 -12.11077 -11.97248 -11.70131 -11.32277 -11.15052 -10.96354 -10.35788 -10.25406 -10.11642 -9.84054 -9.51836 -8.65889 -8.33856 -6.12004 -0.51514 0.48471 0.91296 1.27981 1.39464 1.42518 1.48181 1.58878 1.62631 1.93103 2.11932 2.27884 2.38114 3.00593 3.33286 3.68707 3.88818 3.94488 3.95403 4.11520 4.15750 4.32376 4.35171 4.49969 4.53323 4.53888 4.56108 4.75576 5.01798 5.06684 5.07278 5.22215 5.25612 5.34936 5.42959 5.43763 6.21039 6.33697 6.53157 7.02229 7.07675 7.26945 8.75650 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.037190 B = 0.001515 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.704773 B =18473.644039 C =19195.297957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.122 3.878 15 C -0.123 4.123 16 C 0.123 3.877 17 N -0.712 5.712 18 C 0.586 3.414 19 O -0.577 6.577 20 C -0.305 4.305 21 C -0.063 4.063 22 C -0.162 4.162 23 C -0.220 4.220 24 S 0.247 5.753 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.419 0.581 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.866 -29.451 0.007 37.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.365 5.365 14 C -0.003 4.003 15 C -0.161 4.161 16 C -0.001 4.001 17 N -0.364 5.364 18 C 0.373 3.627 19 O -0.458 6.458 20 C -0.425 4.425 21 C -0.098 4.098 22 C -0.192 4.192 23 C -0.358 4.358 24 S 0.514 5.486 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.257 0.743 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.250 0.750 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 20.747 -28.596 0.007 35.330 hybrid contribution 1.060 -0.097 0.001 1.064 sum 21.807 -28.693 0.008 36.040 Atomic orbital electron populations 1.70197 1.08033 1.28530 1.48131 1.26140 0.95947 1.03372 0.93755 0.84891 0.78667 0.76284 0.78003 1.17866 1.20022 1.20032 1.23250 0.95402 0.91923 1.58698 0.89730 1.85636 1.10851 0.99448 1.97060 1.23368 1.03434 0.94171 1.07000 1.20103 0.86231 0.86825 0.75122 1.90705 1.17651 1.86155 1.50172 1.45644 1.10423 1.04848 1.75548 1.21206 0.96951 0.80039 1.02094 1.21815 0.97547 0.90912 1.05853 1.21220 0.88649 0.87596 1.02646 1.45688 1.11016 1.04782 1.74933 1.17307 0.87433 0.82385 0.75558 1.90829 1.23806 1.78987 1.52195 1.24602 0.98543 0.98101 1.21295 1.21016 1.00600 0.91957 0.96211 1.20241 0.90269 1.03035 1.05688 1.25805 1.05579 0.97940 1.06480 1.82766 0.93997 1.05455 1.66379 0.92034 0.86978 0.86973 0.74295 0.92266 0.92279 0.88151 0.88141 0.91625 0.91623 0.75029 0.83848 0.81693 0.78395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.82 9.50 67.95 0.65 -30.17 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.16 -8.67 20.57 -56.49 -1.16 -9.84 16 10 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 11 C 0.53 18.89 7.85 87.66 0.69 19.58 16 12 O -0.57 -26.22 15.86 -3.03 -0.05 -26.27 16 13 N -0.71 -15.80 5.56 -463.07 -2.57 -18.38 16 14 C 0.12 2.35 5.67 86.38 0.49 2.85 16 15 C -0.12 -1.24 5.44 30.59 0.17 -1.08 16 16 C 0.12 1.79 5.67 86.38 0.49 2.28 16 17 N -0.71 -9.61 5.55 -467.16 -2.59 -12.20 16 18 C 0.59 11.70 7.78 86.42 0.67 12.38 16 19 O -0.58 -16.71 16.84 -4.36 -0.07 -16.78 16 20 C -0.31 -4.61 6.45 24.08 0.16 -4.45 16 21 C -0.06 -0.91 10.01 21.72 0.22 -0.69 16 22 C -0.16 -1.42 10.15 21.08 0.21 -1.21 16 23 C -0.22 -1.30 10.92 66.81 0.73 -0.57 16 24 S 0.25 1.74 22.16 -56.49 -1.25 0.49 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 27 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 28 H 0.42 5.88 8.47 -92.71 -0.79 5.09 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 2.97 7.59 -92.71 -0.70 2.27 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: -1.00 -85.79 363.22 -0.40 -86.20 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.39 Total: 11.66 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.37 Total: -4.38 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -4.88 Total: -86.31 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.12 Total: -43.05 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -2.41 Total: -9.35 kcal Total: -85.79 -0.40 -86.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195300705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.578 kcal (2) G-P(sol) polarization free energy of solvation -85.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds